ID   JN941973; SV 1; linear; genomic RNA; STD; VRL; 1410 BP.
XX
AC   JN941973;
XX
DT   11-JUL-2012 (Rel. 113, Created)
DT   11-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Sugarcane streak mosaic virus isolate CBBaragua HC-Pro protein gene,
DE   partial cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-1410
RX   DOI; 10.1007/s00705-012-1297-8.
RX   PUBMED; 22481599.
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Karuppaiah R.,
RA   Ganesh Kumar V., Viswanathan R.;
RT   "Genetic variability and potential recombination events in the HC-Pro gene
RT   of sugarcane streak mosaic virus";
RL   Arch. Virol. 157(7):1371-1375(2012).
XX
RN   [2]
RP   1-1410
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Ganesh Kumar V.,
RA   Karuppaiah R., Viswanathan R.;
RT   ;
RL   Submitted (25-OCT-2011) to the INSDC.
RL   Pathology, Sugarcane Breeding Institute, Veerakeralam, Coimbatore,
RL   Tamilnadu 641007, India
XX
DR   MD5; 37e04e2af69929bb13d9ccb12d62cade.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1410
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="Saccharum hybrid cultivar CBBaragua"
FT                   /isolate="CBBaragua"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /collected_by="Bagyalakshmi, K"
FT                   /collection_date="19-Mar-2011"
FT                   /identified_by="Viswanathan, R"
FT                   /db_xref="taxon:53954"
FT   CDS             <1..>1410
FT                   /codon_start=1
FT                   /product="HC-Pro protein"
FT                   /db_xref="GOA:I6WLZ8"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:I6WLZ8"
FT                   /protein_id="AFN26730.1"
FT                   /translation="TDGHKAKSHLFWDAIMKCHPDDHKFVDTTWNDEAYANMGYWLAAT
FT                   YPFRVACKECSSIKSVREWVQNMRASKAYQLLRGGTSKHSRDLFRWLAAIQSELMTFNI
FT                   RDAQNTQEDLNRNFLGTIPIGPIFDVANQMNQAVVDIQRGLQQMHKLITDAELTHQSRD
FT                   EQILNEIARLRGLEFMQTERLMTNMKHVAMTYRNLINTASQPLSIHTMRQLLLDARSDE
FT                   AYEFDIMRGKGAIAVVAPGVFRKFDNIYSKPGVYNPEWTHLTPGGEIRTDFDYLRTDLK
FT                   ISQLHDKIHKWPENPLVDETCIVSVGEMSYHLCERVYECFVPIPHILRVGNPQNPTLIR
FT                   IQDMIDGDTYLPRQGYCYVLQFVLMLGFVGDSMVAPFVEEVGVQIQKLGKWPLFEDYMD
FT                   TIKQLVLKFPTAAKAPTVLYVVNHAQEYIHAITTLGCVNKNEHYLNVHSVAKLHEVMAT
FT                   LNTQNIMKYRIG"
XX
SQ   Sequence 1410 BP; 456 A; 277 C; 302 G; 375 T; 0 other;
     acagacggac ataaggcaaa atcacatctg ttctgggacg ccataatgaa atgtcatcct        60
     gatgaccata agtttgttga cacaacatgg aacgatgaag cttatgcaaa catgggctat       120
     tggctagctg caacgtaccc gtttagagtc gcctgcaagg aatgctcaag tattaaatcc       180
     gttcgtgaat gggtgcaaaa tatgcgagcg tctaaagctt atcaactcct aagaggtggc       240
     acatcaaagc attcacgaga tttatttagg tggctggcag cgatccaatc tgagttaatg       300
     acttttaata ttagagatgc acaaaacaca caagaagatc tcaataggaa tttcctcgga       360
     acaataccca tcggcccaat ctttgatgta gctaatcaaa tgaatcaagc agtagttgat       420
     attcagagag gtctacagca aatgcataaa ctaatcacag atgcagagct aacacatcag       480
     tcgcgggatg agcaaattct taatgaaatt gcgcgacttc gaggattaga atttatgcag       540
     acggagaggc ttatgacaaa catgaaacat gttgctatga cctacaggaa tctaataaac       600
     actgcaagtc aaccattgtc aatacacacg atgcgacaac ttctacttga cgctcgcagt       660
     gacgaggctt atgagttcga catcatgcga ggaaagggcg caattgcagt agttgcgcct       720
     ggtgttttta ggaagtttga taatatatac tcaaaaccag gcgtttacaa cccagaatgg       780
     actcatttaa caccaggagg agaaatacga actgatttcg attatctgcg cacggacctt       840
     aaaatttcac aattgcatga caaaattcac aagtggcctg aaaacccact cgttgatgaa       900
     acatgtattg tatccgtagg ggagatgtcc tatcatttgt gcgaacgagt gtatgaatgc       960
     tttgtcccca taccacacat tctgcgagtt ggtaatccac aaaatccgac gcttattaga      1020
     attcaagaca tgatcgacgg ggatacatac ttaccacgcc aaggatattg ttatgtgtta      1080
     cagttcgtgc tcatgcttgg ttttgttggt gattcaatgg ttgccccatt cgttgaagag      1140
     gttggcgtgc agatacagaa gcttggtaag tggccgttat ttgaagatta tatggacact      1200
     atcaaacaat tggttttgaa atttccaaca gccgctaaag ctccaactgt gttatatgtt      1260
     gttaatcacg ctcaagagta tatccatgcg ataacaacac ttggatgtgt aaataaaaat      1320
     gaacattact taaacgttca tagtgttgca aaattacacg aggtgatggc aacgctcaac      1380
     acacaaaata ttatgaaata tcgtattgga                                       1410
//