ID JN936441; SV 1; linear; genomic RNA; STD; VRL; 9437 BP. XX AC JN936441; XX DT 25-OCT-2012 (Rel. 114, Created) DT 25-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Potato virus Y isolate Z16 polyprotein-like gene, partial sequence. XX KW . XX OS Potato virus Y OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-9437 RA Visser J.C., Bellstedt D.U.; RT "The molecular and biological characterization of South African isolates of RT PVYNTN: implications for pathogenicity determinants"; RL Unpublished. XX RN [2] RP 1-9437 RA Visser J.C., Bellstedt D.U.; RT ; RL Submitted (26-OCT-2011) to the INSDC. RL Department of Biochemistry, Stellenbosch University, Lab 165, JC Smuts RL Building, Van der Bijl Street, Stellenbosch, Western Cape 7600, South RL Africa XX DR MD5; a51198b42b3fa5587d1f2660fdfe1895. XX FH Key Location/Qualifiers FH FT source 1..9437 FT /organism="Potato virus Y" FT /host="Solanum tuberosum" FT /strain="NTN" FT /isolate="Z16" FT /mol_type="genomic RNA" FT /country="South Africa" FT /collection_date="20-Jan-2010" FT /db_xref="taxon:12216" FT misc_feature <1..9168 FT /note="similar to polyprotein" XX SQ Sequence 9437 BP; 2929 A; 1742 C; 2234 G; 2519 T; 13 other; tttggttcna ttgantgcaa acttccatac tcacccgctc cttttgggct agttgcggga 60 aaacgagaag tttcaaccac cactgacccc ttcgcaagtt tggaaatgca gcttagtgcg 120 cgattacgaa ggcaagagtt tgcaactatt cgaacatcca agaatggtac ttgcatgtat 180 cgatacaaga ctgatgtcca gattgcgcgc attcaaaaga agcgcgagga gagagaaaga 240 gaggaatata atttccaaat ggctgcgtca agtgttgtgt cgaagatcac tattgctggt 300 ggagagccac cttcaaaact tgaatcacaa gtgcggaggg gtgtcatcca cacaactcca 360 aggatgcgca cagcaaaaac atatcacacg ccaaagttga cagagggaca aatgatccac 420 cttatcaagc aggtgaagca aattatgtca accaaaggag ggtctgtcca actgattagc 480 aagaaaaaca cccatgttca ctataaagaa gttttggggt cacatcgcgc ggttgtttgc 540 actgcacaca tgagaggttt acgaaagaga gtggactttc ggtgtgacaa atggaccgtt 600 gtgcgtctac agcatctcgc caggacggac aagtggatat accaagttcg tgctactgat 660 ctacgcaagg gcgatagtgg agttatattg agtaatacta atctcaaagg aaactttgga 720 agaagctcgg agggcctatt catagtgcgt gggtcgcacg aaggaaaaat ctatgatgca 780 cgttccaagg ttactcaagg ggttatggat tcaatggttc agttctcaag cgctgaaagc 840 ttttggaagg gattggacgg caattgggca caaatgagat atcctacaga tcatacatgt 900 gtggcaggct taccagttga ggactgtggc agagttgcag cgataatgac acacagtatt 960 ttaccgtgct ataagataac ctgccctacc tgtgcccaac aatatgccaa cttgccagcc 1020 agtgacttac ttaagatatt gcacaagcac gcaagtgatg gtttaaatcg attgggggca 1080 gacaaagatc gctttgtgca tgtcaaaaag ttcttgacaa tcttagagca cttaactgaa 1140 ccggttgatc tgagtctaga aattttcaat gaagtattca agtctatagg ggagaagcaa 1200 caatcacctt tcaaaaacct gaatattctg aataatttct ttttgaaagg aaaggaaaat 1260 acagctcgtg aatggcaggt ggctcattca accttacttg aattggcaag attccaaaag 1320 aacagaacgg ataatttaaa aaagggcgac gtctcgttct ttaggaataa actatctgcc 1380 aaagcaaatt ggaacttgta tctgtcatgt gataaccagc tggataagaa tgcaaacttc 1440 ctgtggggac agagagaata tcatgctaag cgatttttct cgaactattt tgaggaaatt 1500 gatccagcga agggctattc agcatacgaa aatcgtttgc atccgaatgg gacaagaaaa 1560 cttgcaattg gaaacctaat tgtaccactt gatctggctg agtttaggcg gaagatgaaa 1620 ggtgattata aaagacagcc aggggtgagt aagaagtgca cgagctcgaa ggatggaaac 1680 tacgtgtatc cctggtggtg cactacacct gatgatggct cagctgttgg tacaacgttt 1740 taccccccaa ctaaaaagca cctcgtaata ggtaatagtg gcgatcaaaa gtatgttgac 1800 ttaccaaaag ggaattctga gatgttatat attgccaggc aaggtttctg ttacattaac 1860 attttcctcg cgatgttgat taacattagt gaggaagatg caaaggattt cactaagaag 1920 gttcgtgaca tgtgtgtgcc aaagcttgga acctggccaa ccatgatgga tctggctaca 1980 acttgtgctc aaatgaaaat attctaccct gatgttcatg atgcaaaact gcctagaata 2040 ctagtcaatc acaaaacgca gacatgccat gtggttgact cgtttggctc acaaacaact 2100 gggtatcata ttttgaaagc atctagcgtg tcccaactaa ttttgtttgc taatgatgag 2160 ttggagtctg actttaagca ctatagagtg ggtggaattc ctcatgcacg ccctgaactt 2220 gggtctacaa taaccccttt catagaggga agagaaatat tatctgagtc ggcagcgctg 2280 aaactgcttt tgaagggaat ttttagacct aaggtgatga gacagttgct gttagatgag 2340 ccttacctgt tgattctatc aatattatcc cctggcatac tgatggctat gtacaataat 2400 gggatttttg aacttgcggt aaggttgtgg attaatgaga aacaatccat agctatgata 2460 gcatcgctac tatcagcttt agccctacga gtgtcagcgg cagaaacact cgtcgcacag 2520 aggattataa ttgatactgc agccacagat ctccttgatg ctacgtgcga tgggttcaac 2580 ctacatctaa cgtaccccac tgcgttgatg gtgttgcaag ttgttaagaa tagaaatgaa 2640 tgtgatgata ccctattcaa ggcgggtttt ccaagttaca acacgagcgt cgtacagatc 2700 atggaaaaaa attatctaaa tctcttgaac gatgcttgga aagatttaac ttggcgggaa 2760 aaattatccg caacatggta ctcatacaga gcaaaacgct ctatcactcg gtacataaaa 2820 cccacaggaa gggcagattt gaaagggtta tacaacatat caccacaagc attcttgggc 2880 cgaggcgccc aggtggtcaa aggcactgcc tcaggattga gcgagcgatt taataattat 2940 ttcaatacta agtgtgtgaa tatttcatcc tttttcattc gtagaatctt taggcgtttg 3000 ccaactttcg tcacttttgt taactcatta ttagttatta gtatgttaac cagcgtagtg 3060 gcagtgtgtc aggcaataat tttagatcag aggaagtata ggagagaaat tgagttgatg 3120 cagatagaga agaatgagat cgtctgcatg gagctatatg caagtttaca gcgcaaactt 3180 gaacgcgatt tcgcatggga tgagtacatt gagtatttaa agtcggtaaa ccctcagata 3240 gttcagtttg ctcaccccca aatggaagaa tataatgtgc gacaccagcg ttccccaccc 3300 ggtgttaaaa atttggaaca agtgggagca tttatggctt tagtcatcat ggtgtttgat 3360 gctgaaagga gggattgggt gttcaaaact ctcaaaaaat ttaagggtgt cctttcctca 3420 ctggaccatg aagttagaca tcagtcctta gacgaagtga tcaagaattt tgatgagagg 3480 aaagagacta ttgattttga attgagtggg gacacaattt gaacatcatc agtgctagat 3540 acaaaggtta gtgaatggtg ggaccgacta atttagatgg gacatacact tccacattac 3600 agaaccgagg ggcacttcat ggaattcaca agagcaactg ctgtccaagt ggctaatgat 3660 atcgcccaca gcgaacacct agactttcta gtaaggggag ctgttgggtc tggaaagtca 3720 aatgggttgc ctgttcatct tagtgtagct ggatctgtgc ttttaattga accaacgcga 3780 ccactagcgg agaacgtttt caaacagcta tctagtgaac ctttcttcaa gaagccaaca 3840 ctgcgtatgc gtggaaatag tatatttggc tcttcttcaa tctccgtcat gactagcgga 3900 tttgcgctac actactttgc caataatcgc tctcaattag ctcagttcaa ctttgtgata 3960 tttgatgagt gccatgttct ggatccttcc gcaatggcgt tccgcagtct gctgagtgtt 4020 taccatcaag catgcaaagt attaaaagtg tcagcttctc cagtgggaag agaggttgag 4080 tttacaacac agcaaccagt caagttaata gtggaggaca cactgtcttt ccaatcattt 4140 gttgatgcac aaggttctaa aaccaatgct gatgttgttc agtttggttc aaacgtactt 4200 gtgtacgtgt cgagctacaa tgaagttgac accttggcta agctcctaac agacaagaat 4260 atgatggtca caaaggttga tggcagaaca atgaagcacg gttgcctaga aattgtcaca 4320 aaaggaacca gtgcgagacc gcattttgtt gtagcaacca acataattga gaatggagtg 4380 actttggaca tagacgtggt tgtagatttt gggttgaaag tctcaccgtt cttggacatt 4440 gacaatagga gcattgctta caataaggtg agtgttagct atggtgagag aattcaaagg 4500 ctgggtcgtg ttggacgctc aaagaaagga gtagcattgc gcattggaca cactgagaag 4560 ggaattattg aaattccaag catgatcgct acagaggcgg ctcttgcttg ctttgcatat 4620 aacttgccag tgatgacagg aggcgtctca actagtctga ttggcaattg tactgtgcgc 4680 caagttaaaa caatgcagca atttgaattg agtcccttct ttatccagaa tttcgttgcc 4740 cacgatggat caatgcatcc tgtcatacat gacattctta aaaagtataa acttcgagat 4800 tgtatgacac ctttgtgcga tcagtctata ccatacaggg catcgagcac ttggttatcg 4860 gttagtgaat ataagcgact tggagtggcc ttagaaattc caaagcaagt caaaattgca 4920 ttccatatca aagagatccc tcctaagctc caagaaatgc ttaggaaaac gggtggcaag 4980 tacaaagacg tttgcttctt tccaagcatt cgagcatcgt ccatcagcaa aatcgcatac 5040 acattgcgta cagacctctt cgccatccca agaactctaa tattggtgga gagactgctt 5100 gaagaggagc gagtgaagca gagccaattc agaagtctca tcgacgaagg atgctcaagc 5160 atgttttcaa ttgtcaactt gacaaacact ctcagagcta gatatgcaaa agattacacc 5220 gcagagaata tacaaaaact ngagaaagtg agaagtcaat tgaaagaatt ctcaaatttg 5280 gatggttctg catgtgagga aaatttaata aagaggtatg agtctttgca gttcgttcat 5340 caccaagttg cgacgtcact tgcaaaggat ctcaagttga aggggacttg gaagaagtca 5400 ttagtggcca aagatttgat catagcaggc gctgttgcaa ttggtggaat aggactcata 5460 tatagttggt tcacacaatc agttgagact gtgtctcacc aagggaaaaa taaatccaaa 5520 agaattcaag ccttgaagtt tcgccatgct cgtgacaaaa gggctggctt tgaaattgac 5580 aacaatgatg acacaataga ggaattcttt ggatctgcat acaggaagaa gggaaaaggt 5640 aaaggcacca ctgttggtat gggcaagtca agcaggaggt ttgttaatat gtatggattt 5700 gacccaacag aatattcatt catccagttc gttgatccgc tcactggagc tcaaattgaa 5760 gagaacgtct atgctgatat tagagacatc caagagcgct ttagtgatgt ccgcaagaaa 5820 atggtagagg atgatgaaat cgaattgcaa gcattgggca gcaacacaac cattcatgct 5880 tacttcagga aagattggtc tgacaaggct ctaaaaattg atttgatgcc acacaaccca 5940 ctcaaaatct gtgataaatc gaatggcatt gctaagtttc ctgaaagaga acttgagttg 6000 agacaaactg ggccagcaat agaggttgat gtgaaagaca ttccaaaaca ggaagtggag 6060 catgaagcca aatcactcat gagaggttta agggatttca atccaattgc tcaaacagtt 6120 tgcagagtaa aagtgtctgt tgaatatgga acgtctgaaa tgtatgggtt cggttttggt 6180 gcgtatatta tagtaaacca ccatctattc aagagtttca atggatccat ggaagtgcga 6240 tcaatgcatg gaacattcag agtgaagaat ttgcatagct tgagcgtttt accgatcaaa 6300 ggcagagaca ttatcatcat aaagatgcca aaggatttcc ctgttttccc acaaaaactg 6360 cacttccgag ctccagtgca gaatgagagg atttgtttgg ttggaactaa ttttcaggaa 6420 aaacatgcat catcaatcat cacagaaacg agtactacat acaatgtacc gggcagcact 6480 ttttggaagc attggattga aacaaatgat gggcattgtg gattaccagt agtgagtaca 6540 gctgatggtt gtctagttgg aatacacagc ttggcgaata atgtgcaaac cacgaattat 6600 tattcagcct ttgatgagga ttttgaaagt aagtatctcc gaactaatga gcataatgag 6660 tggaccaaat cgtgggtata taacccagat actgtgttgt ggggtccatt aaagctcaag 6720 gagagtaccc ctaaaggcct gtttaagaca acaaaacttg tacaggattt aattgatcat 6780 gatgttgttg tagagcaagc taaacactct gcgtggatgt atgaggctct aacagggaat 6840 ttgcaagctg tggcgacaat gaagagtcag ctggtgacaa agcacgtggt caaaggggag 6900 tgtcggcact tcaaagagtt cttaactgtg gattcggaag cagaagcnnn nnntttcttc 6960 aggcctttga tggatgctta tgggaagagc ttgttaaata gagaagcata cataaaggac 7020 ataatgaaat actcaaagcc tattgatgtt ggaacagtag actgtgatgc ttttgaagag 7080 gctatcaata gggttatcat ttatctgcaa gtgcatggct tccagaaatg caattacatc 7140 accgatgagc aggaaatttt caaagctctc aatatgaaag ctgctgtcgg agctatgtat 7200 ggaggcaaga agaaagacta cttcgagcat tttactgagg cggataaaga ggaaattgtt 7260 atgcaaagtt gccttcgatt gtacaagggc tcgcttggca tatggaatgg atcgttgaaa 7320 gcagaacttc agtgcaaaga gaagatactt gcaaataaga caaggacctt cactgctgca 7380 cctttatata atctactggg cggaaaggtg tgccttcatg attttaataa tcaattctac 7440 tcgaagaaca ttgaatgctg ctggactgtt ggaatgacta agttttatgg aggttgggac 7500 aaattgcttc ggcgtctacc tgaaaattnn ngggtgtact gcgatgccga tggttcacaa 7560 ttcgatagtt cactcacccc atacctaatt aatgctgttc tcatcatcag aagcacatac 7620 atggaagatt gggacttggg gttgcaaatg ttgcgcaatt tgtacacaga aataatttac 7680 acaccaatct caactccaga tggaacaatt gtcaagaagt ttagaggtaa taatagcggt 7740 caaccttcta ccgttgtgga taattctctc atggttgtcc ttgctatgca ttacgctctc 7800 attaaggagt gcgttgagtt tgaagaaatc gacagcacgt gtgtattctt tgttaatggt 7860 gatgacttat tgattgctgt gaatccggag aaagagagca ttctcgatag aatgtcacaa 7920 catttctcag atcttggttt gaattatgat ttttcgtcga gaacaagaag gaaggaggaa 7980 ttgtggttca tgtcccatag aggcctgcta atcgagggta tgtacgtgcc aaagcttgaa 8040 gaagagagaa ttgtatccat tttgcaatgg gatagagctg atctgccaga gcacagatta 8100 gaagcgattt gtgcagcaat gatagaatcc tggggttatt ttgagttaac gcaccaaatc 8160 aggagatttt actcatggtt gttgcaacag caaccttttt caacgatagc acaggaagga 8220 aaagctccat acatagcgag catggcattg aagaagctgt acatgaatag gacagtagat 8280 gaggaggaac tgaaggcttt cactgaaatg atggttgcct tggatgatga acttgagtgc 8340 gatacttatg aagtgcacca tcaaggaaat gacacaatcg atgcaggagg aagcactaag 8400 aaggatgcaa aacaagagca aggtagcatt caaccaaatc tcaacaagga aaaggaaaag 8460 gacgtgaatg ttggaacatc tggaactcat actgtgccac gaattaaagc tatcacgtcc 8520 aaaatgagaa tgcccaagag taaaggtgca actgtactaa atttggaaca cttactcgag 8580 tatgctccac agcaaattga catctcaaat actcgagcaa ctcaatcaca gtttgatacg 8640 tggtatgaag cggtacaact tgcatacgac ataggagaaa ctgaaatgcc aactgtgatg 8700 aatgggctta tggtttggtg cattgaaaat ggaacctcgc caaacatcaa cggagtttgg 8760 gttatgatgg atggagatga acaagtcgaa tacccactga aaccaatcgt tgagaatgca 8820 aaaccaacac ttaggcaaat catggcacat ttctcagatg ttgcagaagg gtatatagaa 8880 aagcgcaaca aaaaggaacc atatatgccc cgatatggtt tagtttgtaa tttgcgcgat 8940 ggaagtttgg ctcgctatgc ttttgacttt tatgaagtca catcacgaac accagtgagg 9000 gctagggaag cgcacattca aacgaaggcc gcagcattga aatcagccca acctcgactt 9060 tttgggttgg acgggggcat cagtacacaa gaggagaaca cagagaggca cacccccgag 9120 gatgtctctc caagtatgca tactctactt ggagtcaaga acatgtgatt gtagtgtctc 9180 tccggacgat atataagtat ttacatatgc agtaagtatt ttggcttttc ctgtgctact 9240 tttatcataa ttaataatca gtttgaatat tactaataga tagaggtggc agggggattt 9300 tgtcattgtn ggtgactcta tcttttaatt ccgcattatt aagttttaga taaaagtgcc 9360 gggttgtggg tgttgtggat gattcatcga ttaggtgatg ttgcgattct gtcgtagcag 9420 tgactatgtc tggataa 9437 //