ID JN936440; SV 1; linear; genomic RNA; STD; VRL; 9434 BP. XX AC JN936440; XX DT 25-OCT-2012 (Rel. 114, Created) DT 25-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Potato virus Y isolate Z14 polyprotein-like gene, partial sequence. XX KW . XX OS Potato virus Y OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-9434 RA Visser J.C., Bellstedt D.U.; RT "The molecular and biological characterization of South African isolates of RT PVYNTN: implications for pathogenicity determinants"; RL Unpublished. XX RN [2] RP 1-9434 RA Visser J.C., Bellstedt D.U.; RT ; RL Submitted (26-OCT-2011) to the INSDC. RL Department of Biochemistry, Stellenbosch University, Lab 165, JC Smuts RL Building, Van der Bijl Street, Stellenbosch, Western Cape 7600, South RL Africa XX DR MD5; 68bc3f0fabd0ea7f8d7fd3080b09cd87. XX FH Key Location/Qualifiers FH FT source 1..9434 FT /organism="Potato virus Y" FT /host="Solanum tuberosum" FT /strain="NTN" FT /isolate="Z14" FT /mol_type="genomic RNA" FT /country="South Africa" FT /collection_date="04-Mar-2009" FT /db_xref="taxon:12216" FT misc_feature <1..9168 FT /note="similar to polyprotein" XX SQ Sequence 9434 BP; 2928 A; 1742 C; 2222 G; 2531 T; 11 other; tttggttcca ttgaatgcaa acttccatac tcacccgctc cttttgggct agttgcgggg 60 aaacgagaag tttcaaccac cactgacccc ttcgcaagtt tggagatgca gcttagtgcg 120 cgattacgaa ggcaagagtt tgcaactatt cgaacatcca agaatggtac ttgcatgtat 180 cgatacaaga ctgatgtcca gattgcgcgc attcaaaaga agcgcgagga gagagaaaga 240 gaggaatata atttccaaat ggctgcgtca agtgttgtgt cgaagatcac tattgctggt 300 ggagagccac cttcaaaact tgaatcacaa gtgcggaggg gtgttatcca cacaactcca 360 aggatgcgca cagcaaaaac atatcacacg ccaaagttga cagagggaca aatgaaccac 420 cttattaagc gggtgaagca aattatgtca accaaaggag ggtctgtcca actgattagc 480 aagaaaaaca cccatgttca ctataaagaa gttttggggt cacatcgcgc ggttgtttgc 540 actgcacaca tgagaggttt acgaaagaga gtggactttc ggtgtgacaa atggaccgtt 600 gtgcgtctac agcatctcgc caggacggac aagtgggtat accaagttcg tgctactgat 660 ctacgcaagg gcgatagtgg agttatattg agtaatacta atctcaaagg acactttgga 720 agaagctcgg agggcctatt catagtgcgt gggtcgcacg aaggaaaaat ctatgatgca 780 cgttccaagg ttactcaagg ggttatggat tcaatggttc agttctcaag cgctgaaagc 840 ttttggaagg gattggacgg caattgggca caaatgagat atcctacaga tcatacatgt 900 gtggcaggct taccagttga agactgtggc agagttgcag cgataatgac acacagtatt 960 ttaccgtgct ataagataac ctgccctacc tgtgcccaac aatatgccaa cttgccagcc 1020 agtgacttac ttaagatatt acacaagagc gcaagtgatg gtttaaatcg attgggggca 1080 gacaaagatc gctttgtgca tgtcaaaaag ttcttgacaa tcttagagca cttaactgaa 1140 ccggttgatc tgagtctaga aattttcaat gaagtattca agtctatagg ggagaagcaa 1200 caatcacctt tcaaaaacct gaatattctg aataatttct ttttgaaagg aaaggaaaat 1260 acagctcgtg aatggcaggt ggctcattta accttacttg aattggcaag attccaaaag 1320 aacagaacgg ataatatcaa gaaaggagac atctcgttct ttaggaataa actatctgcc 1380 aaagcaaatt ggaacttgta tctgtcatgt gataaccaac tggataagaa agcaaacttc 1440 ctgtggggac agagagaata tcatgctaag cgatttttct cgaactattt cgaggaaatt 1500 gatccagcga agggctattc agcatatgaa aatcgtttgc atccgaatgg gacaagaaaa 1560 cttgcaattg gaaacctaat tgtaccactt gatctggctg agtttaggcg gaagatgaaa 1620 ggtgattata aaagacagcc cggggtgagt aagaagtgca cgagctcgaa ggatggaaac 1680 tacgtgtatc cctggtggtg cactacactt gaggatggct cagctgttga atcaacattt 1740 taccccccaa ctaaaaagca cctcgtaata ggtaatagtg gcgatcaaaa gtatgttgac 1800 ttaccaaaag ggaattctga gatgttatat attgccaggc aaggtttctg ttacattaac 1860 attttcctcg cgatgttgat aaacattagt gaggaagatg caaaggattt cactaagaag 1920 gttcgtgaca tgtgtgtgcc aaagcttgga accgggccaa ccatgatgga tctggctaca 1980 acttgtgctc aaatgaaaat attctaccct gatgttcatg atgcagaact gcctagaata 2040 ctagtcgatc acgaaacgca gacatgccat gtggttgact cgtttggctc acaaacaact 2100 gggtatcata ttttgaaagc atctagcgtg tcccaactta ttttgtttgc taatgatgag 2160 ttggagtctg acattaagca ctatagagtt ggtggtattc ctaatgcatg ccctgaactt 2220 gggtctacaa tatcaccttt cagagaagga ggagttataa tgtctgagtc ggcagcgctg 2280 aaactgcttt tgaagggaat ttttagacct aaggtgatga gacagttgct gttagatgag 2340 ccttacctgt tgattctatc aatattatcc cctggcatac tgatggctat gtacaataat 2400 gggatttttg aacttgcggt aaggttgtgg attaatgaga aacaatccat agctatgata 2460 gcatcgctac tatcagcttt agccctacga gtgtcagcgg cagaaacact cgtcgcacag 2520 aggattataa ttgatactgc agctacagat ctccttgatg ctacgtgcga tgggttcaac 2580 ctacatctaa cgtaccccac tgcgttgatg gtgttgcaag ttgttaagaa tagaaatgaa 2640 tgtgatgata ccctattcaa ggcgggtttt ccaagttaca acacgagcgt cgtacagatc 2700 atggaaaaaa attatctaaa tctcttgaac gatgcttgga aagatttaac ttggcgggaa 2760 aaattatccg caacatggta ctcatacaga gcaaaacgct ctatcactcg gtacataaaa 2820 cccacaggaa gggcagattt gaaagggtta tacaacatat caccacaagc attcttgggc 2880 cgaggcgccc aggtggtcaa aggcactgcc tcaggattga gcgagcgatt taataattat 2940 ttcaatacta agtgtgtgaa tatttcatcc tttttcattc gtagaatctt taggcgtttg 3000 ccaactttcg tcacttttgt taactcatta ttagttatta gtatgttaac cagcgtagtg 3060 gcagtgtgtc aggcaataat tttagatcag aggaagtata ggagagaaat cgagttgatg 3120 cagatagaga agaatgagat cgtctgcatg gagctatatg caagtttaca gcgcaaactt 3180 gaacgcgatt tcacatggga tgagtacatt gagtatttga agtctgtaaa ccctcagata 3240 gttcagtttg ctcaagcgca gatggaagaa tatgatgtgc gacaccagcg ttccacacca 3300 ggtgttaaaa atttggaaca agtggtagca tttatggctt tagtcatcat ggtgttcgat 3360 gctgaaagga gtgattgcgt gttcaaaact ctcaataaat ttaagggtgt cctttcctca 3420 ctggaccatg aagttagaca tcagtcctta gacgatgtga tcaagaattt tgatgagagg 3480 aatgagacta ttgattttga attgagtgag gacacaattc gaacatcatc agtgctagat 3540 acaaagttta gtgattggtg ggaccgacaa atccagatgg gacatacact tccacattac 3600 agaaccgagg ggcacttcat ggaattcaca agagcaactg ctgtccaagt ggctaatgat 3660 atcgcccaca gcgaacacct agactttcta gtaaggggag ctgttgggtc tggaaagtca 3720 aatgggttgc ctgttcatct tagtgtagct ggatctgtgc ttttaattga accaacgcga 3780 ccactagcgg agaacgtttt caaacagcta tctagtgaac ctttcttcaa gaagccaaca 3840 ctgcgtatgc gtggaaatag tatatttggc tcttcttcaa tctccgtcat gactagcgga 3900 tttgcgctac actactttgc caataatcgc tctcaattag ctcagttcaa ctttgtgata 3960 tttgatgagt gccatgttct ggatccttcc gcaatggcgt tccgcagtct gctgagtgtt 4020 taccatcaag catgcaaagt attaaaagtg tcagctactc cagtgggaag agaggttgaa 4080 tttacaacac agcaaccagt caagttaata gtagaggaca cactgtcttt ccaatcattt 4140 gttgatgcac aaggttctaa aactaatgct gatgttgttc agtttggttc aaacgtactt 4200 gtgtacgtgt cgagctacaa tgaagttgac accttggcta agctcctaac agacaagaat 4260 atgatggtca caaaggttga tggcagaaca atgaagcacg gttgcctaga aattgtcaca 4320 aaaggaacca gtgcgagacc acattttgtt gtagcaacca acataattga gaatggagta 4380 actttggaca tagacgtggt tgtagatttt ggattgaaag tctcaccgtt cttggacatt 4440 gacaatagga gcattgctta caataaggtg agtgttagct atggtgagag aattcaaagg 4500 ctgggtcgtg ttggacgctt caagaaagga gtagcattgc gcattggaca cactgagaag 4560 ggaattattg aaattccaag catgatcgct acagaggcgg ctcttgcttg ctttgcatat 4620 aacttgccag tgatgacagg aggcgtctca actagtctga ttggcaattg tactgtgcgc 4680 caagttaaaa caatgcagca atttgaattg agtcccttct ttatccagaa tttcgttgcc 4740 cacgatggat caatgcatcc tgtcatacat gacattctta aaaagtataa acttcgagat 4800 tgtatgacac ctttgtgcga tcagtctata ccatacaggg catcgagcac ttggttatcg 4860 gttagtgaat ataagcgact tggagtggcc ttagaaattc caaagcaagt caaaattgca 4920 ttccatatca aagagatccc tcctaagctc cacgaaatgc tttgggaaac ggttgtcaag 4980 tacaaagacg tttgcttatt tccaagcatt cgagcatcgt ccatcagcaa aatcgcatac 5040 acattgcgta cagacctctt tgccatccca agaactctaa tattggtgga gagactgctt 5100 gaagaggagc gagtgaagca gagccaattc agaagtctca ttgacgaagg atgctcaagc 5160 atgttttcaa ttgtcaactt gacaaacact ctcagagcta gatatgcaaa agattacacc 5220 gcagagaata tacaaaaact ngagaaagtg agaagtcaat tgaaagaatt ctcaaatttg 5280 gatggttctg catgtgagga aaatttaata aagaggtatg agtctttgca gttcgttcat 5340 caccaagctg cgacatcact tgcaaaggat ctcaagttga aggggacttg gaagaagtca 5400 ttagtggcca aagacttgat catagcaggc gctgttgcaa ttggtggaat aggactcata 5460 tatagttggt tcacacaatc agttgagact gtgtctcacc aagggaaaaa taaatccaaa 5520 agaattcaag ccttgaagtt tcgccatgct cgtgacaaaa gggctggctt tgaaattgac 5580 aacaatgatg acacaataga ggaattcttt ggatctgcat acaggaagaa gggaaaaggt 5640 aaaggcaccc ctgttggtat gggcaagtca agcaggaggt tttttaatat gtagggtttt 5700 cccccaccaa aatattcttt cttccagttc tttgatcccc tcactggggc tcaaattaaa 5760 gaaaacgtct atgctgatat tagagacatc caagagcgct ttagtgatgt ccgcaagaaa 5820 atggtagagg atgatgaaat cgaattgcaa gcattgggca gcaacacaac cattcatgct 5880 tacttcagga aagattggtc tgacaaggct ctaaaaattg atttgatgcc acacaaccca 5940 ctcaaaatct gtgataaatc gaatggcatt gctaagtttc ctgaaagaga acttgagttg 6000 agacaaactg ggccagcaat agaggttgat gtgaaagaca ttccaaaaca ggaagtggag 6060 catgaagcca aatcactcat gagaggttta agggatttca atccaattgc tcaaacagtt 6120 tgcagagtaa aagtgtctgt tgaatatgga acgtctgaaa tgtatgggtt cggttttggt 6180 gcgtatatta tagtaaacca ccatctattc aagagtttca atggatccat ggaagtgcga 6240 tcaatgcatg gaacattcag agtgaagaat ttgcatagct tgagcgtttt accgatcaaa 6300 ggcagagaca ttatcatcat aaagatgcca aaggatttcc ctgttttccc acaaaaactg 6360 cacttccgag ctccagtgca gaatgagagg atttgtttgg ttggaactaa ttttcaggaa 6420 aaacatgcat catcaatcat cacagaaacg agtactacat acaatgtacc gggcagcact 6480 ttttggaagc attggattga aacaaatgat gggcattgtg gattaccagt agtgagtaca 6540 gctgatggtt gtctagttgg aatacacagc ttggcgaata atgtgcaaac cacgaattat 6600 tattcagcct ttgatgagga ttttgaaagt aagtatctcc gaactaatga gcataatgag 6660 tggaccaaat cgtgggtata taacccagat actgtgttgt ggggtccatt aaagctcaag 6720 gagagtaccc ctaaaggcct gtttaagaca acaaaacttg tacaggattt gattgatcat 6780 gatgttgttg tagagcaagc taaacattct gcgtggatgt atgaggctct aacagggaat 6840 ttgcaagctg tggcgacaat gaagagtcag ctggtgacaa agcacgtggt caaaggggag 6900 tgtcggcact tcaaagagtt cttaactgtg gattcggaag cagaagctnn nnnnttcttc 6960 aggcctttga tggatgctta tgggaagagc ttgttaaata gagaagcata tataaaggac 7020 ataatgaaat actcaaagcc tattgatgtt ggaatagtag actgtgatgc ttttgaagag 7080 gctatcaata gggttatcat ttatctgcaa gtgcatggct tccagaaatg caattacatc 7140 accgatgagc aggaaatctt caaagctctc aatatgaaag ctgctgtcgg agctatgtat 7200 ggaggcaaga agaaagacta cttcgagcat tttactgagg cggataaaga ggaaattgtt 7260 atgcaaagtt gccttcgatt gtacaagggc tcgcttggca tatggaatgg atcattgaaa 7320 gcagaacttc ggtgcaaaga gaagatactt gcaaataaga caaggacatt cactgctgca 7380 ccttaagata ctctactggg tggaaaggtg tgcgtcgatg attataataa tcaattctac 7440 tcgaagaaca ttgaatgctg ctggactgtt ggaatgacta agttttatgg aggttgggac 7500 agattgcttc ggcgtctacc tgaaaattnn ngggtgtact gcgatgccga tggttcacaa 7560 ttcgatagtt cactcacccc atacctaatt aatgctgttc tcatcatcag aagcacatac 7620 atggaagatt gggacttggg gttgcaaatg ttgcgcaatt tgtacacaga aataatttac 7680 acaccaatct caactccaga tggaacaatt gtcaagaagt ttagaggtaa taatagcggt 7740 caaccttcta ccgttgtgga taattctctc atggttgtcc ttgctatgca ttacgctctc 7800 attaaggagt gcgttgagtt tgaagaaatc gacagcacgt gtgtattctt tgttaatggt 7860 gatgacttat tgattgctgt gaatccggag aaagagagca ttctcgatag aatgtcacaa 7920 catttctcag atcttggttt gaactatgat ttttcgtcga gaacaagaag gaaggaggaa 7980 ttgtggttca tgtcccatag aggcctgcta atcgagggta tgtacgtgcc aaagcttgaa 8040 gaagagagaa ttgtatccat tttgcaatgg gatagagctg atctgccaga gcacagatta 8100 gaagcgattt gtgcagcaat gatagaatcc tggggttatt ttgagttaac gcaccaaatc 8160 aggagatttt actcatggtt gttgcaacag caaccttttt caacgatagc acaggaagga 8220 aaagctccat acatagcgag catggcattg aagaagctgt acatgaatag gacagtagat 8280 gaggaggaac tgaaggcttt cactgaaatg atggttgcct tggatgatga acttgagtgc 8340 gatacttatg aagtgcacca tcaaggaaat gacacaatcg atgcaggagg aagcactaaa 8400 gatgatgcaa aacaagagca aggtagcatt caaccaaatc tcaacaagga aaaggaaaag 8460 gacgtgaatg ttggaacatc tggaactcat actgtgccac gaattaaagc tatcacgtcc 8520 aaaatgagaa tgcccaagag taaaggtgca actgtactaa atttggaaca cttactcgag 8580 tatgctccac agcaaattga catctcaaat actcgagcaa ctcaatcaca gtttgattcg 8640 tggtatgaag cggtacaact tgcatacgac ataggagaaa ctgaaatgcc aactgtgatg 8700 aatgggctta tggtttggtg cattgaaaat ggaacctcgc aaaacatcaa cggatttggg 8760 gttatgatgg atggagatga acaagtcgaa tccccactga aaccaatcgt tgaaaatgca 8820 aaaccaacac ttaggcaaat catggcacat ttctcagatg ttgcagaagc gtatatagaa 8880 atgcgcaaca aaaaggaacc atatatgcca cgatatggtt tagttcgtaa tctgcgcgat 8940 ggaagtttgg ctcgctatgc ttttgacttt tatgaagtca catcacgaac accagtgagg 9000 gctagggaag cgcacattca aatgaaggcc gcagcattga aatcagccca acctcgactt 9060 ttcgggttgg acggtggcat cagtacacaa gaggagaaca cagagaggca caccaccgag 9120 gatgtctctc caagtatgca tactctactt ggagtcaaga acatgtgatt gtagtgtctc 9180 tcccgacgat atataagtat ttacatatgc agtaagtatt ttggcttttc ctgtactact 9240 tttatcataa ttaataatca gtttgaatat tactaataga tagaggtggc agggggattt 9300 tgtcattgtn ggtgactcta tcttttaatt ccgcattatt aagtcttaga taaaagtgcc 9360 gggttgtcgt tgttgtggat gattcatcga ttaggtgatg ttgcgattct gtcgtagcag 9420 tgactatgtc tgga 9434 //