ID JN936436; SV 1; linear; genomic RNA; STD; VRL; 9434 BP. XX AC JN936436; XX DT 25-OCT-2012 (Rel. 114, Created) DT 25-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Potato virus Y isolate SS607_31 polyprotein-like gene, partial sequence. XX KW . XX OS Potato virus Y OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-9434 RA Visser J.C., Bellstedt D.U.; RT "The molecular and biological characterization of South African isolates of RT PVYNTN: implications for pathogenicity determinants"; RL Unpublished. XX RN [2] RP 1-9434 RA Visser J.C., Bellstedt D.U.; RT ; RL Submitted (26-OCT-2011) to the INSDC. RL Department of Biochemistry, Stellenbosch University, Lab 165, JC Smuts RL Building, Van der Bijl Street, Stellenbosch, Western Cape 7600, South RL Africa XX DR MD5; 0ed31a23cf7ae7e7c8139f76a27fc7f8. XX FH Key Location/Qualifiers FH FT source 1..9434 FT /organism="Potato virus Y" FT /host="Solanum tuberosum" FT /strain="NTN" FT /isolate="SS607_31" FT /mol_type="genomic RNA" FT /country="South Africa" FT /collection_date="12-Feb-2010" FT /db_xref="taxon:12216" FT misc_feature <1..9183 FT /note="similar to polyprotein" FT gap 6963..7148 FT /estimated_length=186 FT gap 8072..8379 FT /estimated_length=308 XX SQ Sequence 9434 BP; 2768 A; 1678 C; 2083 G; 2405 T; 500 other; accttaacaa tccagtttgg ttccattgan tgcaaacttc catactcacc cgctcctttt 60 gggctagttg cggggaaacg agaagtttca accaccactg accccttcgc aagtttggaa 120 atgcaactta gtgcgcgatt acgaaggcaa gagtttgcaa ctattcgaac atccaagaat 180 ggtacttgca tgtatcgata caagactgat gtccagattg cgcgcattca aaagaagcgc 240 gaggagagag aaagagagga atataatttc caaatggctg cgtcaagtgt tgtgtcgaag 300 atcactattg ctggtggaga gccaccttca aaacttgaat cacaagtgcg gaggggtgtt 360 atccacacaa ctccaaggat gcgcacagca aaaacatatc acacgccaaa gttgacagag 420 ggacaaatga accaccttat taagcaggtg aagcaaatta tgtcaaccaa aggagggtct 480 gtccaactga ttagcaagaa aagtacccat gttcactata aagaagtttt ggggtcacat 540 cgcgcagttg tttgcactgc acatatgaga ggtttacgaa agagagtgga ctttcggtgt 600 gataaatgga ccgttgtgcg cctacagcat ctcgccagga cggacaagtg gactaaccaa 660 gttcgtgcta ctgatctacg caagggcgat agtggagtta tattgagtaa tactaatctc 720 aaaggacact ttggaagaag ctcggagggc ctattcatag tgcgtgggtc gcacgaagga 780 aaaatctatg atgcacgttc caaggttact caaggggtta tggattcaat ggttcagttc 840 tcaagcgctg aaagcttttg gaagggattg gacggcaatt gggcacaaat gagatatcct 900 acagatcata catgtgtggc aggcttacca gttgaagact gtggcagagt tgcagcgata 960 atgacacaca gtattttacc gtgctataag ataacctgcc ctacctgtgc ccaacaatat 1020 gccaacttgc cagccagtga cttacttaag atattacaca agcacgcaag tgatggttta 1080 aatcgattgg gggcagacaa agatcgcttt gtgcatgtca aaaagttctt gacaatctta 1140 gagcacttaa ctgaaccggt tgatctgagt ctagaaattt tcaatgaagt attcaagtct 1200 ataggggaga agcaacaatc acctttcaaa aacctgaata ttctgaataa tttctttttg 1260 aaaggaaagg aaaatacagc tcgtgaatgg caggtggctc aattaagctt acttgaattg 1320 gcaagattcc aaaagaacag aacggataat atcaagaaag gagacatctc gttctttagg 1380 aataaactat ctgccaaagc aaattggaac ttgtatctgt catgtgataa ccagctggat 1440 aagaatgcaa acttcctgtg gggacagaga gaatatcatg ctaaccgatt tttctcgaac 1500 tatttcgagg aaattgatcc agcgaagggc tattcagcat atgaaaatcg tttgcatccg 1560 aatgggacaa gaaaacttgc aattggaaac ctaattgtac cacttgatct ggctgagttt 1620 aggcggaaga tgaaaggtga ttataaaaga cagccagggg tgagtaagaa gtgcacgagc 1680 tcgaaggatg gaaactacgt gtatccctgt tgttgcacta cacttgatga tggctcagct 1740 gttgaatcaa cattttaccc cccaactaag aagcacctcg taataggtaa tagtggcgat 1800 caaaagtatg ttgacttacc aaaagggaat tctgagatgt tatatattgc caggcaaggt 1860 ttctgttaca ttaacatttt cctcgcgatg ttgataaaca ttagtgagga agatgcaaag 1920 gatttcacta agaaggttcg tgacatgtgt gtgccaaagc ttggaacctg gccaaccatg 1980 atggatctgg ctacaacttg tgctcaaatg aaaatattct accctgatgt tcatgatgca 2040 gaactgccta gaatactagt cgatcacgaa acgcagacat gccatgtggt tgactcgttt 2100 ggctcacaaa caactgggta tcatattttg aaagcatcta gcgtgtccca acttattttg 2160 tttgctaatg atgagttgga gtctgacatt aagcactata gagttggtgg tattcctaat 2220 gcatgccctg aacttgggtc tacaatatca cctttcagag aaggaggagt tataatgtct 2280 gagtcggcag cgctgaaact gcttttgaag ggaattttta gacctaaggt gatgagacag 2340 ttgctgttag atgagcctta cctgttgatt ctatcaatat tatcccctgg catactgatg 2400 gctatgtaca ataatgggat ttttgaactt gcggtaaggt tgtggattaa tgagaaacaa 2460 tccatagcta tgatagcatc gctactatca gctttagccc tacgagtgtc agcggcagaa 2520 acactcgtcg cacagaggat tataattgat actgcagcta cagatctcct tgatgctacg 2580 tgcgatgggt tcaacctaca tctaacgtac cccactgcgt tgatggtgtt gcaagttgtt 2640 aagaatagaa atgaatgtga tgatacccna ttcaaggcgg gttttccaag ttacaacacg 2700 agcgtcgtac agatcatgga aaaaaattat ctaaatctct tgaacgatgc ttggaaagat 2760 ttaacttggc gggaaaaatt atccgcaaca tggtactcat acagagcaaa acgctctatc 2820 actcggtaca taaaacccac aggaagggca gatttgaaag ggttatacaa catatcacca 2880 caagcattct tgggccgagg cgcccaggtg gtcaaaggca ctgcctcagg attgagcgag 2940 cgatttaata attatttcaa tactaagtgt gtgaatattt catccttttt cattcgtaga 3000 atctttaggc gtttgccaac tttcgtcact tttgttaact cattattagt tattagtatg 3060 ttaaccagcg tagtggcagt gtgtcaggca ataattttag atcagaggaa gtataggaga 3120 gaaatcgagt tgatgcagat agagaagaat gagatcgtct gcatggagct atatgcaagt 3180 ttacagcgca aacttgaacg cgatttcaca tgggatgagt acattgagta tttgaagtca 3240 gtaaaccctc agatagttca gtttgctcaa gcgcagatgg aagaatatga tgtgcgacac 3300 cagcgttcca caccaggtgt taaaaatttg gaacaagtgg tagcatttat ggctttagtc 3360 atcatggtgt tcgatgctga aaggagtgat tgcgtgttca aaactctcaa taaatttaag 3420 ggtgtccttt cctcactgga ccatgaagtt agacatcagt ccttagacga tgtgatcaag 3480 aattttgatg agaggaatga gactattgat tttgaattga gtgaggacac aattcgaaca 3540 tcgtcagtgc tagatacaag gtttagtgat tggtgggacc gacaaatcca gatgggacat 3600 acacttccac attacagaac cgaggggcac ttcatggaat tcacaagagc aactgctgtc 3660 caagtggcta atgatatcgc ccatagcaaa cacctagatt ttctagtagg gggagctgtg 3720 gggtcgggaa agtcaacggg gttgcctgtt cttcttagtg tagcggggtc tgtgctttta 3780 tttgaaccaa cccgccccct agcggaaaac tttttcaaac agctatctag tgaacctttc 3840 ttcaaaaacc caacactgcg tatgcgtgga aatagtatat ttggctcttc tccaatctcc 3900 gtcatgacta gcggatttgc cctacactac ttccccaata atcgctctca attacctcat 3960 ttcaactttg tgatttttga tgagtgcctt gttctggatc cttccgcaag ggctttccgc 4020 attctgctga gtgtttatca tcaagcatgc aaagtattaa aagtgtcacc tcctccagtg 4080 ggaagagagg ttgattttac aacacaccac ccagtcaatt taatagtgga ggacaccctg 4140 tctttccaat cttttgttga tgcacagggt tctaaaacta atgctgatgt tgttcatttg 4200 ggttcaaacg tacttgtgta cgtgtcgagc tacaatgaag ttgacacttg ggctaacctc 4260 ctaacaaaca aaaatatgag ggtcacaaag tttgagggca aaacaataaa gcagggttgc 4320 ccataaattg tcacaaaagg aaccagtgcg agaccacttt ttgttgtagc aaccaacata 4380 attgagaatg gagtaacttt ggacatagac gtggttgtag attttggatt gaaagtctca 4440 ccgttcttgg acattgacaa taggagcatt gcttacaata aggtgagtgt tagctatggt 4500 gagagaattc aaaggctggg tcgtgttgga cgcttcaaga aaggagtagc attgcgcatt 4560 ggacacactg agaagggaat tattgaaatt ccaagcatga tcgctacaga ggcggctctt 4620 gcttgctttg catataactt gccagtgatg acaggaggcg tctcaactag tctgattggc 4680 aattgtactg tgcgccaagt taaaacaatg cagcaatttg aattgagtcc cttctttatc 4740 cagaatttcg ttgcccacga tggatcaatg catcctgtca tacatgacat tcttaaaaag 4800 tataaacttc gagattgtat gacacctttg tgcgatcagt ctataccata cagggcatcg 4860 agcacttggt tatcggttag tgaatatgag cgacttggag tggccttaga aattccaaag 4920 caagtcaaaa ttgcattcca tatcaaagag atccctccta agctccacga aatgctttgg 4980 gaaacggttg tcaagtacaa agacgtttgc ttatttccaa gcattcgagc atcgtccatc 5040 agcaaaatcg catacacatt gcgaacagac ctcttcgcca tcccaagaac tctaatattg 5100 gtggagagac tgcttgaaga ggagcgagtg aagcaaatcc aattcaaaag tctcatcgac 5160 caaggttgct caagcatgtt ttcaattgtc aacttgacaa acactctcag agctagatat 5220 gcaaaagatt acaccgcaga gaatatacaa aaacttgaga aagtgagaag tcaattgaaa 5280 gaattctcaa atttggatgg ttttgcatgt gaggaaaatt taataaagag gtatgagtct 5340 ttgcagttcg ttcatcacca agctgcgaca tcacttgcaa aggatctcaa gttgaagggg 5400 acttggaaga agtcattagt ggccaaagac ttgatcatag caggcgctgt tgcaattggt 5460 ggaataggac tcatatatag ttggttcaca caatcagttg agactgtgtc tcaccaaggg 5520 aaaaataaat ccaaaagaat tcaagccttg aagtttcgcc atgctcgtga caagagggct 5580 ggctttgaaa ttgacaacaa tgatgacaca atagaggaat tctttggatc tgcatacagg 5640 aagaagggaa aaggtaaagg caccactgtt ggtatgggca agtcaagcag gaggtttgtt 5700 aatatgtatg gatttgaccc aacagaatat tcattcatcc agttcgttga tccgctcact 5760 ggagctcaaa ttgaagagaa cgtctatgct gattttagag acatccaaaa ccccattagt 5820 gatgtccgca agaaaatggt agaggatgat gaaatcgaat tgcaagcatt gggcagcaac 5880 acaaccattc atgcttactt caggaaagat tggtctgaca aggctctaaa aattgatttg 5940 atgccacaca acccactcaa aatctgtgat aaatcgaatg gcattgctaa gtttcctgaa 6000 agagaacttg agttgagaca aactgggcca gcaatagagg ttgatgtgaa agacattcca 6060 aaacaggaag tggagcatga agccaaatca ctcatgagag gtttaaggga tttcaatcca 6120 attgctcaaa cagtttgcag agtaaaagtg tctgttgaat atggaacgtc tgaaatgtat 6180 gggttcggtt ttggtgcgta tattatagta aaccaccatc tattcaagag tttcaatgga 6240 tccatggaag tgcgatcaat gcatggaaca ttcagagtga agaatttgca tagcttgagc 6300 gttttaccga tcaaaggcag agacattatc atcataaaga tgccaaagga tttccctgtt 6360 ttcccacaaa aactgcactt ccgagctcca gtgcagaatg agaggatttg tttggttgga 6420 actaattttc aggaaaaaca tgcatcatca atcatcacag aaacgagtac tacatacaat 6480 gtaccgggca gcactttttg gaagcattgg attgaaacaa atgatgggca ttgtggatta 6540 ccagtagtga gtacagctga tggttgtcta gttggaatac acagcttggc gaataatgtg 6600 caaaccacga attattattc agcctttgat gaggattttg aaagtaagta tctccgaact 6660 aatgagcata atgagtggac caaatcgtgg gtatataacc cagatactgt gttgtggggt 6720 ccattaaagc tcaaggagag tacccctaaa ggcctgttta agacaacaaa acttgtacag 6780 gatttaattg atcatgatgt tgttgtagag caagctaaac attctgcgtg gatgtatgag 6840 gctctaacag ggaatttgca agctgtggcg acaatgaaga gtcagctggt gacaaagcac 6900 gtggtcaaag gggagtgtcg gcacttcaaa gagttcttaa ctgtggattc ggaagcagaa 6960 gcnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 7020 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 7080 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 7140 nnnnnnnntt acatcaccga tgagcaggaa atcttcaaag ctctcaatat gaaagctgct 7200 gtcggagcta tgtatggagg caagaagaaa gactacttcg agcattttac tgaggcggat 7260 aaagaggaga tttttatgca aagttgcctc cgattgtaca agggctcgct tggcatatgg 7320 aatggatcat tgaaagcaga acttcggtgc aaagagaaga tacttgcaaa taagacaagg 7380 acattcactg ctgcaccttt agatactcta ctgggtggaa aggtgtgcgt tgatgatttt 7440 aataatcaat tctactcgaa gaacattgaa tgctgctgga ctgttggaat gactaagttt 7500 tatggaggtt gggacagatt gcttcggcgt ctacctgaaa attnnngggt gtactgcgat 7560 gccgatggtt cacaattcga tagttcactc accccatacc taattaatgc tgttctcatc 7620 atcagaagca catacatgga agattgggac ttggggttgc aaatgttgcg caatttgtac 7680 acagaaataa tttacacacc aatctcaact ccagatggaa caattgtcaa gaagtttaga 7740 ggtaataata gcggtcaacc ttctaccgtt gtggataatt ctctcatggt tgtccttgct 7800 atgcattacg ctctcattaa ggagtgcgtt gagtttgaag aaatcgacag cacgtgtgta 7860 ttctttgtta atggtgatga cttattgatt gctgtgaatc cggagaaaga gagcattctc 7920 gatagaatgt cacaacattt ctcagatctt ggtttgaact atgatttttc gtcgagaaca 7980 agaaggaaag aggaattgtg gttcatgtcc catagaggcc tgctaatcga gggtatgtac 8040 gtgccaaagc ttgaagaaga gagaattgta gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 8100 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 8160 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 8220 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 8280 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 8340 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnng gaaatgacac aatcgatgca 8400 ggaggaagca ctaagaagga tgcaaaacaa gagcaaggta gcattcaacc aaatctcaac 8460 aaggaaaagg aaaaggacgt gaatgttgga acatctggaa ctcatactgt gccacgaatt 8520 aaagctatca cgtccaaaat gagaatgccc aagagtaaag gtgcaactgt actaaatttg 8580 gaacacttac tcgagtatgc tccacagcaa attgacatct caaatactcg agcaactcaa 8640 tcacagtttg atacgtggta tgaagcggta caacttgcat acgacatagg agaaactgaa 8700 atgccaactg tgatgaatgg gcttatggtt tggtgcattg aaaatggaac ctcgccaaac 8760 atcaacggag tttgggttat gatggatgga gatgaacaag tcgaataccc actgaaacca 8820 atcgttgaga atgcaaaacc aacacttagg caaatcatgg cacatttctc agatgttgca 8880 gaagcgtata tagaaatgcg caacaaaaag gaaccatata tgccccgata tggtttagtt 8940 tgtaatttgc gcgatggaag tttggctcgc tatgcttttg acttttatga ggtcacatca 9000 cgaacaccag tgagggctag ggaagcgcac attcaaatga aggccgcagc attgaaatca 9060 gcccaatctc gacttttcgg gttggacggt ggcatcagta cacaagagga gaacacagag 9120 aggcacacca ccgaggatgt ctctccaagt atgcatactc tacttggagt caagaacatg 9180 tgattgtagt gtctctcccg acgatatata agtatttaca tatgcagtaa gtattttggc 9240 ttttcctgta ctacttttat cataattaat aatcagtttg aatattaata atagatagag 9300 gtggcagggt gatttcgtca ttgtnggtga ctctatcttt taatttcgca ttattaagtc 9360 ttagataaaa gtgccgggtt gtcgctgttg tggatgattc atcgattagg tgatgttgcg 9420 attctgtcgt accc 9434 //