ID JN936433; SV 1; linear; genomic RNA; STD; VRL; 9457 BP. XX AC JN936433; XX DT 25-OCT-2012 (Rel. 114, Created) DT 25-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Potato virus Y isolate SS082A_88 polyprotein-like gene, partial sequence. XX KW . XX OS Potato virus Y OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-9457 RA Visser J.C., Bellstedt D.U.; RT "The molecular and biological characterization of South African isolates of RT PVYNTN: implications for pathogenicity determinants"; RL Unpublished. XX RN [2] RP 1-9457 RA Visser J.C., Bellstedt D.U.; RT ; RL Submitted (26-OCT-2011) to the INSDC. RL Department of Biochemistry, Stellenbosch University, Lab 165, JC Smuts RL Building, Van der Bijl Street, Stellenbosch, Western Cape 7600, South RL Africa XX DR MD5; f981b226660d10ad2e014b80f65b3764. XX FH Key Location/Qualifiers FH FT source 1..9457 FT /organism="Potato virus Y" FT /host="Solanum tuberosum" FT /strain="N" FT /isolate="SS082A_88" FT /mol_type="genomic RNA" FT /country="South Africa" FT /collection_date="01-Jun-2005" FT /db_xref="taxon:12216" FT misc_feature <1..9155 FT /note="similar to polyprotein" XX SQ Sequence 9457 BP; 2946 A; 1707 C; 2219 G; 2575 T; 10 other; aatgcaaact tccatactca cccgctcctt ttgggctagt tgcggggaaa cgagaagttt 60 caaccaccac tgaccccttc gcaagtttgg agatgcagct tagtgcgcga ttacgaaggc 120 aagagtttgc aactattcga acatccaaga atggtacttg catgtatcga tacaagactg 180 atgtccagat tgcgcgcatc caaaagaagc gtgaggaaag agaaagagag gaatataatt 240 tcctaatggc tgaggcaagt gttgtgtcga agatcactat tgctggtgga gagccacctt 300 caaaacttga atcacaagtg cggaggggtg tcatccacac aactccaagg atgcgcacag 360 caaaaacata tcacacgcca aagttgacag agggacaaat gaaccaccta atcaagcagg 420 tgaagcaaat tatgtcaacc aaaggagggt ctgttcaact gattagcaag aaaagtaccc 480 atgttcatta taaagaagtt ttgggatcac atcgcgcagt tgtttgcact gcacatatga 540 gaggtttacg aaagagagtg gactttcggt gtgataaatg gaccgttgtg cgtctacagc 600 atctcgccag gacggacaag tggactaacc aagttcgtgc tactgatcta cgcaagggcg 660 atagtggagt tatattgagt aatactaatc tcaaaggaaa ctttgggaga agctcggagg 720 gcctattcat agtgcgtggg tcgcacgaag gaaaaatcta tgatgcacgt tccaaggtta 780 ctcaaggggt tatgaattca atggttcagt tctcaagcgc tgaaagcttt tggaagggat 840 tggacggcaa ttgggcacaa atgagatatc ctacagatca tacatgtgtg gcaggcttac 900 cagttgaaga ctgtggcaga gttgcagcga taatgacaca cagtatttta ccgtgctata 960 agataacctg ccctacctgc gcccaacaat atgccaactt gccagccagt gacttactta 1020 agatattaca caagcacgca agtgatggtc taaatcgatt gggggcagac aaagatcgct 1080 ttgtgcatgt caaaaagttc ttgacaatct tagagcactt aactgaaccg gttgatctga 1140 gtctagaaat tttcaatgaa gtgttcaagt ctatagggga gaagcaacaa tcacctttca 1200 aaaacctgaa tattctgaat aatttctttt tgaaaggaaa ggaaaataca gctcgtgaat 1260 ggcaggtggc tcaattaagc ttacttgaat tggcaagatt ccaaaagaac agaacggata 1320 atatcaagaa aggagacatc tcgttcttta ggaataaact atctgccaaa gcaaattgga 1380 acttgtatct gtcatgtgat aaccagctgg ataagaatgc aaacttcctg tggggacaga 1440 gggaatatca tgctaagcga tttttctcga actatttcga ggaaattgat ccagcgaagg 1500 gctattcagc atacgaaaat cgtttgcatc cgaatgggac aagaaaactt gcaattggaa 1560 acctaattgt accacttgat ctggctgagt ttaggcggaa gatgaaaggt gattataaaa 1620 gacagccagg ggtgagtaag aagtgcacga gctcgaagga tggaaactac gtgtatccct 1680 gttgctgcac cacactcgat gatggctcag ctgttgaatc aacattttac ccgccaacta 1740 agaaacacct cgtaataggt aatagtggcg accaaaagta tgttgactta ccaaaaggga 1800 attctgagat gttatatatt gccaggcaag gcttctgcta cattaacatt ttcctcgcga 1860 tgttgattaa cattagtgag gaagatgcaa aggatttcac taagaaggtt cgtgacatgt 1920 gtgtgccaaa gcttggaacc tggccaacca tgatggatct ggctacaact tgtgctcaaa 1980 tgaaaatatt ctaccctgat gttcatgatg cagaactgcc tagaatacta gtcgatcacg 2040 aaacgcagac atgccatgtg gttgactcgt ttggctcaca aacaactggg tatcatattt 2100 tgaaagcatc tagcgtgtcc caacttattt tgtttgccaa tgatgagttg gagtctgaca 2160 ttaagcacta tagagttggt ggtattcctg gagcatgccc tgagcttggg tccacaatat 2220 caccttttag agaaggagga atcataatgt ctgagtcagc agcgctaaaa ctgctcctaa 2280 agggaatttt taggcccaaa gtgatgaagc aattgctact ggatgaacca tatttgctca 2340 ttttatcgat attatctcct ggtatactta tggctatgta caacaatggg atatttgagt 2400 tggcggtgaa gttgtggatc aatgagaaac aatctatagc catgatagca tcgttattgt 2460 ccgccttggc tttacgagtg tcagcagcag aaacactcgt tgcacagagg attataattg 2520 acacggcagc aacagatctt ctcgatgcta cgtgtgatgg attcaattta aatctgacat 2580 atcccactgc actcatggtg ttgcaagttg ttaagaacag aaatgaatgt gatgatacgt 2640 tgtttaaagc aggtttttca cattacaaca tgagtgtcgt gcagattatg gaaaaaaatt 2700 atctaagcct cttgggcgat gcttggaaag atttaacctg gcgagaaaaa ttatccgcaa 2760 catggcactc atacaaagca aagcgctcta tcactcagtt cataaaaccc ataggcaaag 2820 cagatttaaa agggttgtac aacatatcac cgcaagcatt cttgggtcag ggcgtacaga 2880 gagtcaaagg caccgcctca gggttgaatg agcgactcaa taattatatt aatactaagt 2940 gtgtaaatat ttcatccttt ttcattcgta gaattttccg gcgcttgcca acttttgtaa 3000 ctttcattaa ttcattatta gttattagta tgctaactag tgtagtagca gtgtgtcaag 3060 caataattct agatcaaagg aagtatagaa aagaaattga gttgatgcag atggagaaga 3120 atgaaattgt ttgtatggag ttgtatgcga gtctgcagcg caaacttgag cgtgaattca 3180 catgggatga atatatggaa tatttgaaat ctgtgaatcc ccaaatagtt caattcgcgc 3240 aagctcaaat ggaagaatat aatgtgcgac atcagcgctc cacaccaggt gttaagaatt 3300 tagagcaggt ggtagcattt ataactctaa ttatcatgat gtttgatgct gaaaggagcg 3360 actgtgtatt taagactctc aacaaattca aaggcatcgt ttcttcaatg gatcatgaag 3420 ttagacacca gtccttggat gatgtaatca agaatttcga tgaaaggaac gaagttattg 3480 attttgagct aaatgaggat acaattaaaa catcatcagt gttggatacg aagtttagcg 3540 actggtggga tcgtcaaatc caaatgggac acacacttcc ccattataga actgagggac 3600 acttcatgga attcacaagg gcaactgctg tacaagtggc caacgacatc gcgcatagtg 3660 agcacctaga ctttctagtg aggggagctg ttgggtctgg aaaatccact ggactgcctg 3720 tccatctcag tgcagctgga tccgtgcttt tgatagaacc aactcgacca cttgcagaaa 3780 acgtgttcaa gcaattatcc agtgaaccgt ttttcaagaa accaacactg cgcatgcgag 3840 gaaatagtgt gtttggttcc tctccaatct ccatcatgac tagcggcttt gcattgcact 3900 actatgctaa taatcgctct cagctaactc agtttaattt cataattttt gatgaatgtc 3960 atgttttaga tccttctgca atggcatttc gtagcttgtt aagtgtgtat caccaaacat 4020 gcaaagtgtt aaaggtgtca gctactccag tggggaggga ggtcgagttc acaacacaac 4080 aaccagttaa attggtggtt gaggatacac tttcattcca atcttttgtt gatgcgcaag 4140 gctcaaaaac caatgccgac gttgttcagc atggttcgaa catactcgtg tgtgtgtcga 4200 gttacaatga agtggataca ttagccaagc ttctaacaga taggaatatg gtagtctcaa 4260 aagttgatgg cagaacaatg aagcacggat gcttggaaat tgtaacgaaa gggactagtg 4320 caaagccaca ttttgtcgta gcaaccaaca ttattgaaaa tggagtaact ttagatatag 4380 atgtagttgt agattttggg cttaaagtct caccgttttt agatattgac aataggagca 4440 ttgcatacaa taagattagt gttagctatg gtagaagaat tcagaggttg ggccgtgttg 4500 ggcgctttaa gaagggagtg gcattgcgta ttggacacac cgaaaaggga attattgaga 4560 ttccaagtat gattgctagt gaagctgcgc ttgcgtgctt tgcatacaat ttgccagtaa 4620 tgacaggggg tgtttcaact agcctcattg gcaattgtac tgttcgtcaa gttaaaacta 4680 tgcaacaatt tgagctgagt ccattcttta tacaaaattt tgttgcccat gatggatcaa 4740 tgcatcctgt catacatgac attcttaaga agtataaact gcgagattgt atgacgccct 4800 tgtgtgatca atccatacct tacagagcct cgagcacttg gttgtctgtt agtgagtacg 4860 aacgactcgg agtagttttg gacattccaa aacagatcaa gattgcattc cacatcaagg 4920 acatccctcc taagttgcat gaaatgcttt gggaaacagt tatcaaatat aaggatgttt 4980 gtttgtttcc aagtattcgg gcttcatcca ttagcaaaat tgcatacaca ctgcgcactg 5040 atctttttgc aattcccaga accctaattt tagttgaaag attgctcgag gaggaacgag 5100 tgaaacagag tcaattcaga agtcttattg atgaaggatg ctcaagcatg ttttcaattg 5160 tcaatttaac aaacactctt agagctagat atgcaaagga ttacactgca gaaaacatac 5220 agaagctcga gaaagtgagg agtcagttaa aggagttctc aaatttaaat ggctctgcat 5280 gcgaggagaa cttaatgaag aggtatgaat ctctacagtt tgtgcaccat caagcaacaa 5340 cttcactcgc aaaggatttg aagttgaaag gagtttggaa gaagtcatta gttgtgcagg 5400 acttactcat agcgggtgcc gttgctattg gtggaatagg gctcatctat agtgggttta 5460 ctcaatcagt tgaaactgtg tctcaccagg gcaagaacaa atccaaaaga attcaagcat 5520 tgaagtttcg acacgcccgc gataagaggg ctggctttga aattgataac aatgacgata 5580 caatagaaga attctttgga tctgcataca ggaagaaggg aaaaggtaaa ggcaccactg 5640 ttggtatggg caagtcaagc aggaggtttg ttaatatgta tggatttgac ccaacagaat 5700 attcattcat ccagttcgtt gatccgctca ctggagctca aattgaagag aacgtctatg 5760 ctgatattag agacatccaa gagcgcttta gtgatgtccg caagaaaatg gtagaggatg 5820 atgaaatcga attgcaagca ttgggcagca acacaaccat tcatgcttac ttcaggaaag 5880 attggtctga caaggctctt aaaattgatt tgatgccaca caacccactc aaaatctgtg 5940 ataaatcgaa tggcattgct aagtttcctg aaagagaact tgagttgagg caaactgggc 6000 cagcagtaga ggttgatgtg aaagacattc caaaacagga agtggagcat gaagccaaat 6060 cactcatgag aggtttaagg gatttcaatc caattgctca aacagtttgc agagtaaaag 6120 tgtctgttga atatggaacg tctgaaatgt atgggctcgg ttttggtgcg tatattatag 6180 taaaccacca tctattcaag agtttcaatg gatccatgga agtgcgatca atgcatggaa 6240 cattcagagt gaagaatttg catagcctga gcgttttacc gatcaaaggc agagacatta 6300 tcatcataaa gatgccaaag gatttccctg ttttcccaca aaaactgcac ttccgagctc 6360 cagtgcagaa tgagaggatt tgtttggttg gaactaattt tcaagaaaaa catgcatcat 6420 caatcatcac agaaacgagt actacataca atgtaccggg cagcactttt tggaagcatt 6480 ggattgaaac aaatgatggg cattgtggat taccagtagt gagtacagct gatggatgtc 6540 tagttggaat acacagcttg gcgaataatg tgcaaaccac gaattattat tcagcctttg 6600 atgaggattt tgaaagtaag tatctccgaa ctaatgagca taatgagtgg accaaatcgt 6660 gggtatataa cccagatact gtgttgtggg gtccattgaa gctcaaggag agtaccccta 6720 aaggcctgtt taagacaaca aaacttgtac aggatttaat tgatcatgat gttgttgtag 6780 agcaagctaa acattctgcg tggatgtatg aggctctaac agggaatttg caagctgtgg 6840 cgacaatgaa gagtcagcta gtgacaaagc acgtggtcaa aggggagtgt cggcacttca 6900 aagagttctt aactgtggac tcggaagcag aagctnnnnn nttcttcagg cctttgatgg 6960 atgcttatgg gaagagcttg ttaaatagag aagcatatat aaaggacata atgaaatact 7020 caaagcctat tgatgttgga atagtagact gtgatgcttt tgaagaggct atcaataggg 7080 ttatcattta tctgcaagtg catggcttcc agaaatgcaa ttacatcacc gatgagcagg 7140 aaattttcaa agctctcaat atgaaagctg ctgtcggagc tatgtatgga ggcaagaaga 7200 aagactactt cgagcatttt actgaggcgg ataaagagga aattgttatg caaagttgcc 7260 ttcgattgta caagggctcg cttggcatat ggaatggatc attgaaagca gaacttcggt 7320 gcaaagagaa gatacttgca aataagacaa ggacattcac tgctgcacct ttagatactc 7380 tactgggtgg aaaggtgtgc gttgatgatt ttaataatca gttctactca aagaacattg 7440 aatgctgctg gactgttgga atgactaagt tttatggagg ttgggacaaa ttgcttcggc 7500 gtctacctga aaattnnngg gtgtactgcg atgccgatgg ttcacaattc gatagttcac 7560 tcaccccata cctaattaat gctgttctca tcatcagaag cacatacatg gaagattggg 7620 acttggggtt gcaaatgttg cgcaatttgt acacagagat aatttacaca ccaatctcaa 7680 ctccagatgg aacaattgtc aagaagttta gaggtaataa tagcggtcaa ccttctaccg 7740 ttgtggataa ttctctcatg gttgtccttg ctatgcatta cgctctcatt aaggagtgcg 7800 ttgagtttga agaaatcgac agcacgtgtg tattctttgt taatggtgat gacttattga 7860 ttgctgtgaa tccggagaaa gagagcattc tcgatagaat gtcacaacat ttctcagatc 7920 ttggtttgaa ctatgatttt tcgtcgagaa caagaaggaa ggaggaattg tggttcatgt 7980 cccatagggg cctgctaatc gagggtatgt acgtgccaaa gcttgaagaa gagagaattg 8040 tatccattct gcaatgggat agagctgatc tgccagagca cagattataa gcgatttgtg 8100 cagcaatgat agaatcctgg ggttattttg agttaaccca ccaaatcagg agattctact 8160 catggttgtt gcaacagcaa cctttttcaa cgatagcaca ggaaggaaaa gctccatacg 8220 gggcgagtat ggcattgaag aagttgtaca tgtataggac aataaatgag gaggaactga 8280 aggctttcac tgaaatgatg gttgccttgg atgacaattt tgagtgcgat acttatgaag 8340 tgcaccatca aggaaatgac acaatcgatg caggaggaag cactaagaag gatgcaaaac 8400 aagagcaagg tagcattcaa ccaaatctca acaaggaaaa ggaaaaggac gtgaatgttg 8460 gaacatctgg aactcatact gtgccacgaa ttaaagctat cacgtccaaa atgagaatgc 8520 ccaggagtaa aggcgcaact gtactaaatt tggaacactt actcgagtat gctccacagc 8580 aaattgacat ctcaaatact cgggcaactc aatcacagtt tgatacgtgg tatgaagcag 8640 tacaacttgc atacgacata ggagaaactg aaatgccaac tgtgatgaat gggcttatgg 8700 tttggtgcat tgaaaatgga acctcgccaa acatcaacgg agtttgggtt atgatggatg 8760 gagatgaaca agtcgaatac ccactgaaac caatcgttga gaatgcaaaa ccaacactta 8820 ggcaaatcat ggcacatttc tcagatgttg cagaagcgta tatagaaatg cgcaacaaaa 8880 aggaaccata tatgccacga tatggtttag ttcgtaatct gcgcgatgga agtttggctc 8940 gctatgcttt tgacttttat gaagttacat cacggacacc agtgagggct agagaggcac 9000 acattcaaat gaaggccgca gctttaaaat cagctcaatc tcgacttttc ggattggatg 9060 gtggcattag tacacaagag gaaaacacag agaggcacac caccgaggat gtttctccaa 9120 gtatgcatac tctacttgga gtcaagaaca tgtgattgta gtgtctttcc ggacgatata 9180 tagatattta tgtttgcagt aagtattttg gcttttcctg tactactttt atcgaaatta 9240 ataatcagtt tgaatattac tggcagatag gggtggtata gcgattccgt cgttgtnagt 9300 gaccttagct gtcgtttctg tattattatg ttttgtataa aagtgccggg ttgttgttgt 9360 tgtggctgat ctatcgatta ggtgatgttg cgattttgtc gtagcagtga ctatgtctgg 9420 atatatcttg cttgggtgat gctgtgattc tgtcata 9457 //