ID JN936426; SV 1; linear; genomic RNA; STD; VRL; 8807 BP. XX AC JN936426; XX DT 25-OCT-2012 (Rel. 114, Created) DT 25-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Potato virus Y isolate NTN-OVS polyprotein-like gene, partial sequence. XX KW . XX OS Potato virus Y OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-8807 RA Visser J.C., Bellstedt D.U.; RT "The molecular and biological characterization of South African isolates of RT PVYNTN: implications for pathogenicity determinants"; RL Unpublished. XX RN [2] RP 1-8807 RA Visser J.C., Bellstedt D.U.; RT ; RL Submitted (26-OCT-2011) to the INSDC. RL Department of Biochemistry, Stellenbosch University, Lab 165, JC Smuts RL Building, Van der Bijl Street, Stellenbosch, Western Cape 7600, South RL Africa XX DR MD5; 4c54901c994d544d81d7c1e953a086af. XX FH Key Location/Qualifiers FH FT source 1..8807 FT /organism="Potato virus Y" FT /host="Solanum tuberosum" FT /strain="NTN" FT /isolate="NTN-OVS" FT /mol_type="genomic RNA" FT /country="South Africa" FT /collection_date="03-Feb-2010" FT /db_xref="taxon:12216" FT misc_feature <1..8536 FT /note="similar to polyprotein" FT gap 2956..3262 FT /estimated_length=307 FT gap 7424..7732 FT /estimated_length=309 XX SQ Sequence 8807 BP; 2539 A; 1460 C; 1896 G; 2220 T; 692 other; gtggantanc caagttcgtg ctactgatct acgcaagggc gatagtggag ttatattgag 60 taatactaat ctcaaaggac actttggaag aagctcggag ggcctattca tagtgcgtgg 120 gtcgcacgaa ggaaaaatct atgatgcacg ttccaaggtt actcaagggg ttatggattc 180 aatggttcag ttctcaagcg ctgaaagctt ttggaaggga ttggacggca attgggcaca 240 aatgagatat cctacagatc atacatgtgt ggcaggctta ccagttgaag actgtggcag 300 agttgcagcg ataatgacac acagtatttt accgtgctat aagataacct gccctacctg 360 tgcccaacaa tatgccaact tgccagccag tgacttactt aagatattac acaagcacgc 420 aagtgatggt ttaaatcgat tgggggcaga taaagatcgc tttgtgcatg tcaaaaagtt 480 tttgacaatc ttagagcact taactgaacc ggttgatctg agtctagaaa ttttcaatga 540 agtattcaag tctatagggg agaagcaaca atcacctttc aaaaacctga atattctgaa 600 taatttcttt ttgaaaggaa aggaaaatac agctcgtgaa tggcaggtgg ctcacttaag 660 cttacttgaa ttggcaagat tccaaaagaa cagaacggat aatatcaaga aaggagacgt 720 ctcgttcttt aggaataaac tatctgccaa agcaaattgg aacttgtatc tgtcatgtga 780 taaccagctg gataataatg caaacttcct gtggggacag aaagaatatc atgctaagcg 840 atttttctcg aactatttca aggaaattga tccaccgaag ggctattcaa catatgaaat 900 tcttttgcat ccgaatggga caagaaaact tgcaattgga aacctaattg taccacttga 960 tctggctgag tttaggcgga agatgaaagg tgattataaa agacagccag gggtgagtaa 1020 gaagtgcacg agctcgaagg atggaaacta cgtgtatccc tgttgttgca caacacttga 1080 tgatggctca gctgttgaat caacatttta cccgccaact aagaagcacc tcgtaatagg 1140 taatagtggc gatcaaaagt atgttgactt accaaaaggg aattctgaga tgttatatat 1200 tgccaggcaa ggtttctgtt acattaacat tttcctcgcg atgttgataa acattagtga 1260 ggaagatgca aaggatttca ctaagaaggt tcgtgacatg tgtgtgccaa agcttggaac 1320 ctggccaacc atgatggatc tggctacaac ttgtgctcaa atgaaaatat tctaccctga 1380 tgttcatgat gcaaaactgc ctagaatact agtcgatcac aaaacgcaaa catgccatgt 1440 ggttgactcg tttggctcac aaacaactgg gtatcatatt ttgaaagcat ctagcgtgtc 1500 ccaacttatt ttgtttgcta atgatgagtt ggagtctgac attaagcact atagagttgg 1560 tggtattcct aatgcatgcc ctgaacttgg gtctacaata tcacctttca gagaaggagg 1620 agttataatg tgtgagtcgg cagcgctaaa actgctttta aagggaattt ttaaacctaa 1680 ggtgatgaga cagttgctgt tagatgagcc tttcctgttg attctttcaa tataatcccc 1740 tggcatactg atggctatgt acaataatgg gatttttgaa cttgcggtaa ggttgtggat 1800 taatgagaaa caatccatag ctatgatagc atcgctacta tcagctttag ccctacgagt 1860 gtcagcggca gaaacactcg tcgcacagag gattataatt gatactgcag ctacagatct 1920 ccttgatgct acgtgcgatg ggttcaacct acatctaacg taccccactg cgttgatggt 1980 gttgcaagtt gttaagaata gaaatgaatg tgatgatacc ctnttcaagg cgggttttcc 2040 aagttacaac acgagcgtcg tacagatcat ggaaaaaaat tatctaaatc tcttgaacga 2100 tgcttggaaa gatttaactt ggcgggaaaa attatccgca acatggtact catacagagc 2160 aaaacgctct atcactcggt acataaaacc cacaggaagg gcagatttga aagggttata 2220 caacatatca ccacaagcat tcttgggccg aggcgcccag gtggtcaaag gcactgcctc 2280 aggattgagc gagcgattta ataattattt caatactaag tgtgtgaata tttcatcctt 2340 tttcattcgt agaatcttta ggcgtttgcc aactttcgtc acttttgtta actcattatt 2400 agttattagt atgttaacca gcgtagtggc agtgtgtcag gcaataattt tagatcagag 2460 gaagtatagg agagaaatcg agttgatgca gatagagaag aatgagatcg tctgcatgga 2520 gctatatgca agtttacagc gcaaacttga acgcgatttc acatgggatg agtacattga 2580 gtatttgaag tcagtaaacc ctcagatagt tcagtttgct caagcgcaga tggaagaata 2640 tgatgtgcga caccagcgtt ccacaccagg tgttaaaaat ttggaacaag tggtagcatt 2700 tatggcttta gtcatcatgg tgttcgatgc tgaaaggagt gattgcgtgt tcaaaactct 2760 caataaattt aagggtgtcc tttcctcact ggaccatgaa gttagacatc agtccttaga 2820 cgatgtgatc aagaattttg atgagaggaa tgagactatt gattttgaat tgagtgagga 2880 cacaattcga acatcatcag tgctagatac aaagtttagt gattggtggg accgacaaat 2940 ccagatggga catacnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3000 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3060 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3120 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3180 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3240 nnnnnnnnnn nnnnnnnnnn nnagcggatt tgcgctacac tacttcgcca ataatcgctc 3300 tcaattagat cagttcaaat ttgtgatatt tgatgagtgc catgttttgg atccttccgc 3360 aatggcgttc cgcagtctgc tgagtgttta ccatcaagca tgcaaagtat taaaagtgtc 3420 agctactcca gtgggaagag aggttgaatt tacaacacag caaccagtca agttaatagt 3480 ggaggacaca ctgtctttcc aatcatttgt tgatgcacaa ggttctaaaa ctaatgctga 3540 tgttgttcag tttggttcaa acgtacttgt gtacgtgtcg agctacaatg aagttgacac 3600 cttggctaag ctcctaacag acaagaatat gatggtcaca aaggttgatg gcagaacaat 3660 gaagcacggt tgcctagaaa ttgtcacaaa aggaaccagt gcgagaccac attttgttgt 3720 agcaaccaac ataattgaga atggagtaac tttggacata gacgtggttg tagattttgg 3780 attgaaagtc tcaccgttct tggacattga caataggagc attgcttaca ataaggtgag 3840 tgttagctat ggtgagagaa ttcaaaggct gggtcgtgtt ggacgcttca agaaaggagt 3900 agcattgcgc attggacaca ctgagaaggg aattattgaa attccaagca tgatcgctac 3960 agaggcggct cttgcttgct ttgcatataa cttgccagtg atgacaggag gcgtctcaac 4020 tagtctgatt ggcaattgta ctgtgcgcca agttaaaaca atgcagcaat ttgaattgag 4080 tcccttcttt atccagaatt tcgttgccca cgatggatca atgcatcctg tcatacatga 4140 cattcttaaa aagtataaac ttcgagattg tatgacacct ttgtgcgatc agtctatacc 4200 atacagggca tcgagcactt ggttatcggt tagtgaatat gagcgacttg gagtggcctt 4260 agaaattcca aagcaagtca aaattgcatt ccatatcaaa gagatccctc ctaagctcca 4320 cgaaatgctt tgggaaacgg ttgtcaagta caaagatgtt tgcttatttc caagcattcg 4380 agcatcgtcc atcggcaaaa tcgcatacac attgcgtaca gacctcttcg ccatcccaag 4440 aactctaata ttggtggaga gactgcttga agaggagcga gtgaagcaga gccaattcag 4500 aagtctcatc gacgaaggat gctcaagcat gttttcaatt gtcaacttga caaacactct 4560 cagagctaga tatgcaaaag attacaccgc agagaatata caaaaacttg agaaagtgag 4620 aagccaattg aaagaattct caaatttgga tggttctgca tgtgaggaaa atttaataaa 4680 gaggtatgag tctttgcagt tcgttcatca ccaagctgcg acatcacttg caaaggatct 4740 caagttgaag gggacttgga agaagtcatt agtggccaaa gacttgatca tagcaggcgc 4800 tgttgcaatt ggtggaatag gactcatata tagttggttc acacaatcag ttgagactgt 4860 gtctcaccaa gggaaaaata aatccaaaag aattcaagcc ttgaagtttc gccatgctcg 4920 tgacaaaagg gctggctttg aaattgacaa taatgatgac acaatagagg aattctttgg 4980 atctgcatac aggaagaagg gaaaaggtaa aggcaccact gttggtatgg gcaagtcaag 5040 caggaggttt gttaatatgt atggatttga cccaacagaa tattcattca tccagttcgt 5100 tgatccgctc actggagctc aaattgaaga gaaagtctat gctgatatta gagacatcca 5160 agagcgcttt agtgatgtcc gcaagaaaat ggtagaggat gatgaaatcg aattgcaagc 5220 attgggcagc aacacaacca ttcatgctta cttcaggaaa gattggtctg acaaggctct 5280 aaaaattgat ttgatgccac acaacccact caaaatctgt gataaatcga atggcattgc 5340 taagtttcct gaaagagaac ttgagttgag acaaactggg ccagcaatag aggttgatgt 5400 gaaagacatt ccaaaacagg aagtggagca tgaagccaaa tcactcatga gaggtttaag 5460 ggatttcaat ccaattgctc aaacagtttg cagagtaaaa gtgtctgttg aatatggaac 5520 gtctgaaatg tatgggttcg gttttggtgc gtatattata gtaaaccacc atctattcaa 5580 gagtttcaat ggatccatgg aagtgcgatc aatgcatgga acattcagag tgaagaattt 5640 gcatagcttg agcgttttac cgatcaaagg cagagacatt atcatcataa agatgccaaa 5700 ggatttccct gttttcccac aaaaactgca cttccgagct ccagtgcaga atgagaggat 5760 ttgtttggtt ggaactaatt ttcaggaaaa acatgcatca tcaatcatca cagaaacgag 5820 tactacatac aatgtaccgg gcagcacttt ttggaagcat tggattgaaa caaatgatgg 5880 gcattgtgga ttaccagtag tgagtacagc tgatggttgt ctagttggaa tacacagctt 5940 ggcgaataat gtgcaaacca cgaattatta ttcagccttt gatgaggatt ttgaaagtaa 6000 gtatctccga actaatgagc ataatgagtg gaccaaatcg tgggtatata acccagatac 6060 tgtgttgtgg ggtccattaa agctcaagga gagtacccct aaaggcctgt ttaagacaac 6120 aagacttgta caggatttaa ttgatcatga tgttgttgta gagcaagcta aacattctgc 6180 gtggatgtat gaggctctaa cagggaattt gcaagctgtg gcgacaatga agagtcagct 6240 ggtgacaaag cacgtggtca aaggggagtg tcggcacttc aaagagttct taactgtgga 6300 ttcggaagca gaagctnnnn nnttcttcag gcctttgatg gatgcttatg ggaagagctt 6360 gttaaataga gaagcatata taaaggacat aatgaaatac tcaaagccta ttgatgttgg 6420 aatagtagac tgtgatgctt ttgaagaggc tatcaatagg gttatcattt atctgcaagt 6480 gcatggcttc cagaaatgca attacatcac cgatgagcag gaaatcttca aagctctcaa 6540 tatgaaagct gctgtcggag ctatgtatgg aggcaagaag aaagactact tcgagcattt 6600 tactgaggcg gataaagagg aaattgttat gcaaagttgc cttcnnnnnn nnnnnnnnnn 6660 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnaga agatacttgc 6720 aaataagaca aggacattca ctgctgcacc tttagatact ctactgggtg gaaaggtgtg 6780 cgttgatgat tttaataatc aattctactc gaagaacatt gaatgctgct ggactgttgg 6840 aatgactaag ttttatggag gttgggacag attgcttcgg cgtctacctg aaaattnnng 6900 ggtgtactgc gatgccgatg gttcacaatt cgatagttca ctcaccccat acctaattaa 6960 tgctgttctc atcatcagaa gcacatacat ggaagattgg gacttggggt tgcaaatgtt 7020 gcgcaattta tacacagaaa taatttacac accaatctca actccagatg gaacaattgt 7080 caagaagttt agaggtaata atagcggtca accttctacc gttgtggata attctctcat 7140 ggttgtcctt gctatgcatt acgctcttat taaggagtgc gttgagtttg aagaaatcga 7200 cagcacgtgt gtattctttg ttaatggtga tgacttattg attgctgtga atccggagaa 7260 agagagcatt ctcgatagaa tgtcacaaca tttctcagat cttggtttga actatgattt 7320 ttcgtcgaga acaagaagga aggaggaatt gtggttcatg tcccatagag gcctgctaat 7380 cgagggtatg tacgtgccaa agcttgaaga agagagaatt gtannnnnnn nnnnnnnnnn 7440 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 7500 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 7560 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 7620 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 7680 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnggaaatga 7740 cacaatcgat gcaggaggaa gcactaagaa ggatgcaaaa caagagcaag gtagcattca 7800 accaaatctc aacaaggaaa aggaaaagga cgtgaatgtt ggaacatctg gaactcatac 7860 tgtgccacga attaaagcta tcacgtccaa aatgagaatg cccaagagta aaggtgcaac 7920 tgtactaaat ttggaacact tactcgagta tgctccacag caaattgaca tctcaaatac 7980 tcgagcaact caatcacagt ttgatacgtg gtatgaagcg gtacaacttg catacgacat 8040 aggagaaact gaaatgccaa ctgtgatgaa tgggcttatg gtttggtgca ttgaaaatgg 8100 aacctcgcca aacatcaacg gagtttgggt tatgatggat ggagatgaac aagtcgaata 8160 cccactgaaa ccaatcgttg agaatgcaaa accaacactt aggcaaatca tggcacattt 8220 ctcagatgtt gcagaagcgt atatagaaat gcgcaacaaa aaggaaccct atatgccccc 8280 atatggttta gtttgtaatt tgcgcgatgg aagtttggct cgctatgctt ttgactttta 8340 tgaggtcaca tcacgaacac ccgtgagggc tagggaagcg cacattcaaa tgaaggccgc 8400 agcattgaaa tcagcccaat ctcgactttt cgggttggac ggtggcatca gtacacaaga 8460 ggagaacaca gagaggcaca cccccgagga tgtctctcca agtatgcata ctctacttgg 8520 agtcaagaac atgtgattgt agtgtctctc cggacgatat ataagtattt acatatgcag 8580 taagtatttt ggcttttcct gtactacttt tatcataatt aataatcagt ttgaatatta 8640 ctaatagata gaggtggcag ggtgattttg tcattgtngg tgactctatc ttttaattcc 8700 gcattattaa gtcttagata aaagtgccgg gttgtcggtg ttgtggatga ttcatcgatt 8760 aggtgatgtt gcgattctgt cgtagcagtg actatgtctg gatatga 8807 //