ID JN936421; SV 1; linear; genomic RNA; STD; VRL; 7787 BP. XX AC JN936421; XX DT 25-OCT-2012 (Rel. 114, Created) DT 25-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Potato virus Y isolate N484_1 polyprotein-like gene, partial sequence. XX KW . XX OS Potato virus Y OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-7787 RA Visser J.C., Bellstedt D.U.; RT "The molecular and biological characterization of South African isolates of RT PVYNTN: implications for pathogenicity determinants"; RL Unpublished. XX RN [2] RP 1-7787 RA Visser J.C., Bellstedt D.U.; RT ; RL Submitted (26-OCT-2011) to the INSDC. RL Department of Biochemistry, Stellenbosch University, Lab 165, JC Smuts RL Building, Van der Bijl Street, Stellenbosch, Western Cape 7600, South RL Africa XX DR MD5; bdf2d8a9145ef23df216f2d0334e49de. XX FH Key Location/Qualifiers FH FT source 1..7787 FT /organism="Potato virus Y" FT /host="Solanum tuberosum" FT /strain="O" FT /isolate="N484_1" FT /mol_type="genomic RNA" FT /country="South Africa" FT /collection_date="11-Sep-2007" FT /db_xref="taxon:12216" FT misc_feature <1..7506 FT /note="similar to polyprotein" XX SQ Sequence 7787 BP; 2371 A; 1428 C; 1846 G; 2102 T; 40 other; agctcgaaag atggtaatta tgtgtatccc tgttgttgca caacacttga tgatggttca 60 gctattgaat caacattcta tccaccaact aaaaagcacc ttgtaatagg caatagtggt 120 gaccaaaaat ttgttgattt accaaaaggg gattcggaga tgttatacat tgccaagcag 180 ggttattgtt atattaacgt gtttcttgca atgctgatta acattagcga ggaggatgca 240 aaggacttca caaagaaagt tcgcgacatg tgtgtgccga agcttggaac ctggccaact 300 atgatggatt tggcgaccac ttgtgctcaa atgagaatat tctatcctga cgtgcatgat 360 gcagaactgc ctagaatatt ggtcgaccat gacactcaaa cgtgtcatgt ggttgactca 420 tttggctcac aaacaactgg atatcatatt ctaaaagcat ccagcgtgtc tcaactcatc 480 ttgtttgcaa atgatgaatt agaatctgat ataaaacatt atagagttgg tggtgttcct 540 aatgcatgcc ctgaacttgg gtccacaata tcacctttca gagaaggagg agttgtaatg 600 tctgagtcgg cagcgttgaa actgctttta aagggaattt ttagacctaa ggtgatgaga 660 cagttgctgt tagatgagcc ttacctgttg attctatcaa tattatctcc tggcatactg 720 atggctatgt ataacaatgg gatttttgaa cttgcggtaa ggttgtggat taatgagaaa 780 caatccatag ctatgatagc atcactacta tcagctttag ccctacgagt gtcagcggca 840 gaaacactcg tcgcacagag gattatcatt gatgccgcag ctacagacct ccttgatgct 900 acgtgtgatg ggttcaacct acatctaacg taccctactg cattgatggt gttgcaagtt 960 gttaagaata gaaatgaatg tgatgatacc ctattcaagg cgggttttcc aagttacaac 1020 acgagtgttg tgcagattat ggaaaaaaat tatctaagtc tcttggacga tgcttggaaa 1080 gatttaactt ggcgggaaaa attatccgca acatggtact catacagagc aaaacgctct 1140 atcactcggt acataaaacc cacaggaagg gcagatttga aagggttata caacatatca 1200 ccacaagcat tcttgggccg aagcgcccag gtggtcaaag gtactgcctc aggattgagc 1260 gagcgattta ataattattt caatactaag tgtgtaaata tttcatcctt tttcattcgt 1320 agaatcttta ggcgtttgcc aacttttgtc acttttgtca actcattatt ggttattagt 1380 atgttaacta gcgtagtggc agtgtgtcag gcaataattt tagatcagag gaagtatagg 1440 agagaaatcg agttgatgca gatagagaag aatgagattg tctgcatgga gctatatgca 1500 agtttacagc gcaaacttga acgcgatttc acatgggatg agtacattga gtatttgaaa 1560 tcagtaaacc ctcagatagt tcagtttgct caagcgcaga tggaagaata tgatgtgcga 1620 caccagcgtt ccacaccagg tgttaaaaat ttggaacaag tagtagcatt tatggcttta 1680 gtcatcatgg tgttcgatgc tgaaaggagt gattgcgtgt tcaaaactct caataaattt 1740 aagggtgtcc tttcttcaat ggactatgaa gttagacatc agtccttaga cgatgtgatc 1800 aagaatttcg atgagaggaa tgagattatt gattttgaat tgagtgagga cacaattcga 1860 acatcatcag tgctagatac aaagtttagt gattgggtgg gacgacaant ccagatggga 1920 catacacttc cacattacag aaccgagggg cacttcatgg aatttacaag agcaactgct 1980 gttcaagtgg ctaatgacat tgcccatagc gaacacctag acttcctaga agggggagct 2040 gttgggtctg gaaagtcaac tgggttgcct gttcatctta gtgtagctgg atctgtgctt 2100 ttgattgaac caacgcgacc actagcggag aacgttttca aacagctatc tagtgaacca 2160 ttcttcaaga agccaacact gcgtatgcgt ggaaatagta tatttggctc ttctccaatc 2220 tccgtcatga ctagtggatt tgcgctacac tactttgcca ataatcgctc tcaattagct 2280 cagttcaact ttgtaatatt tgatgagtgc catgttctgg atccttccgc aagggcgttc 2340 cgcattttgc tgagtgttta tcatcaagca tgcaaagtat taaaagtgtc agctactcca 2400 gtgggaagag aggttgaatt cacaacacag cagccagtca agttaatagt ggaagacaca 2460 ctgtctttcc aatcatttgt tgatgcacaa ggttctaaaa ctaatgctga tgttgttcag 2520 tttggttcaa acgtacttgt gtacgtgtcg agctacaatg aagttgatac cttggctaag 2580 ctcctaacag acaagaatat gatggtcaca aaggttgatg gcagaacaat gaagcacggt 2640 tgcctagaaa ttgtcacaaa aggaaccagt gcgagaccac attttgttgt agcaaccaac 2700 ataattgaga atggagtgac tttggacata gacgtagttg tggactttgg gttgaaagtc 2760 tcaccgttct tggacattga caacaggagc attgcttaca ataaggtgag tgttagctat 2820 ggtgagagaa ttcaaaggct gggtcgtgtt ggacgcttca agaaaggagt agcattgcgt 2880 attggacaca ctgagaaggg aattattgaa attccaagca tggtcgctac tgaggcggct 2940 cttgcttgct ttgcatataa cttgccagtg atgacaggag gcgtctcaac tagtctgatt 3000 ggtagttgta ctgtgcgcca agttaaaaca atgcagcaat ttgaattgag tcccttcttt 3060 atccagaatt tcgttgctca tgatggatca atgcatcctg tcatacatga cattcttaaa 3120 aagtataaac ttcgagattg tatgacacct ttgtgcgatc agtctatacc atacagggca 3180 tcgagcactt ggttatcggt cagtgaatat gagcgacttg gagtggcctt agaaattcca 3240 aagcaagtca aaattgcatt ccatatcaaa gagattcctc ctaagctcca cgaaatgctt 3300 tgggaaacgg ttgttaaata caaagacgtt tgcttatttc caagcattcg agcatcgtcc 3360 atcagcaaaa tcgcatacac attgcgtaca gacctctttg ccatcccaag aactctaata 3420 ttagtggaga gattgcttga agaggagcga gtgaagcaga gccaatttag aagtctcatc 3480 gatgaagggt gctcaagcat gttttcaatt gtcaacttga caaacactct cagagctaga 3540 tatgcaaaag attacaccgc agagaacata caaaaactng agaaagtgag aagtcaatta 3600 aaagaattct cgaatctgga tggttctgca tgtgaggaaa atttaataaa gaggtatgag 3660 tctttgcagt tcgttcatca ccaagctgcg acgtcacttg caaaggatct caagttgaag 3720 gggacttgga agaagtcatt aggggctaaa gatttgatca tagcaggtgc cgttgcaatt 3780 ggtggtatag gactcatata tagttggttc acacagtcag ttgagactgt gtctcaccaa 3840 gggaaaaata aatccaaaaa aatccaagcc ttgaagtttc gccatgctcg tgacaaaagg 3900 gctggctttg aaattgacaa caatgatgac acaatagagg aattctttgg ctctgcatac 3960 aggaaaaagg gaaaaggcaa aggtaccaca gttggtatgg gcaagtcaag caggaggttc 4020 atcaacatgt atgggtttga tccaacagag tactcattca tccaattcgt tgatccactc 4080 accggggctc aaatagaaga gaatgtctat gctgacatta gagatattca agagagattt 4140 agtgaagtgc gaaagaagat ggttgagaat gatgacgttg aaatgcaagc cttgggtagt 4200 aacacgacca ttcatgcata cttcaggaaa gattggtctg acaaagcttt gaagattgat 4260 ttaatgccac acaatccact caaagtttgt gacaagacaa atggcattgc caaatttcct 4320 gagagagagc tcgaactaag gcagactggg ccagctgtag aagtcgacgt gaaggacata 4380 ccagcacagg agggagnntc agtctagcta tcgctcatga gaggcttgag agacttcaac 4440 ccaattgccc aaacagtttg taggctgaaa gtatcagttg aatatgggac atcagagatg 4500 tacggttttg ggtttggagc atacataata gcgaaccacc atttgttcag gagttacaat 4560 ggttccatgg aggtgcgatc catgcacggt acattcaggg tgaagaatct acacagtttg 4620 agcgttctgc caattaaagg tagggatatc atcctcatca aaatgccgaa agatttccct 4680 gtctttccac aaaaattgca tttccgagct cctacacaga atgaaagagt ttgtttagtt 4740 ggaaccaact ttcaggagaa gtatgcatcg tcgatcatca cagaaacaag cactacttac 4800 aatataccag gcagcacatt ctggaagcat tggattgaaa cagataatgg acactgtgga 4860 ctaccagtgg tgagcaccgc cgatggatgt ctagtcggaa ttcacagttt ggcaaacaat 4920 aaacacacca cgaactacta ctcagccttc gatgaagact ttgaaagcaa gtacctccgg 4980 accaatgagc acaatgaatg ggtcaagtct tggatttata atccagacac agtgttgtgg 5040 ggcccgttga gacttaaaga cagcactccc aaagggttat tcaaaacaac aaagcttgtg 5100 caagatctaa tcgatcatga tgaagtggtg gagcaagcta agcattctgc gtggatgttt 5160 gaagccttga caggaaattt gcaagctgtc gcaacaatga agagccagtt agtgaccaag 5220 catgtagtta aaggagagtg tcgacacttc aaagaattcc tgactgtgga tgcagaagca 5280 gaggcnnnnn nattcttcag gcctttgatg gatgcgtatg ggaagagctt actgaataga 5340 gatgcgtata tcaaggacat aatgaagtat tcaaaaccta tagatgttgg tattgtggac 5400 tgtgatgcat ttgaagaagc catcaatagg gttatcatct acctgcaagt gcacggcttc 5460 aagaagtgtg catatgtcac tgacgagcaa gaaattttca aagcgctcaa catgaaagct 5520 gcagtcggag ccatgtatgg tggcaaaaag aaagactatt ttgagcattt cactgatgca 5580 gataaggaag aaatagtcat gcaaagctgt ctgcgattgt ataaaggctt gcttggcatt 5640 tggaatggat cattgaaggc agagctccgg tgtaaggaaa agatacttgc aaataagacg 5700 aggacattca ctgctgcacc tttagacact ttgctgggtg gtaaagtgtg tgttgatgac 5760 ttcaataatc aattttattc aaagaatatt gaatgctgtt ggacggttgg gatgactaag 5820 ttttatggtg gttgggataa actgctgcgg cgtttacctg annnnnnnnn nnnnnnnnnn 5880 nnnnnnnatg gctcacagtt tgaaagttca ctaactccat acttaatcaa tgctgttctc 5940 accatcagaa gcacatacat ggaagattgg gatgtggggt tgcaaatgtt gcgcaattta 6000 tacactgaga ttgtttacac acctatttca actccagatg gaacaattgt taagaagttc 6060 agaggaaata acagtggtca gccttctact gttgtggaca actctcttat ggtcgtcctt 6120 gccatgcact atgctctcat caaagaatgc attgagtttg aagagattga cagcacgtgc 6180 gtgttctttg tcaatggtga tgatttgctg attgctgtga atccggataa agagggcatt 6240 cttgacagat tgtcacaaca cttctcagat cttggtttga attatgattc tncgtcaaga 6300 acaagaaata aggaggagtt gtggtttatg tctcatagag gcctactgat tgagggcatg 6360 tacgtgccga aacttgaaga agaaaggatt gtgtccattc tccaatggga cagggcagac 6420 ttggctgaac acaggcttga ggcgatttgc gcagctatga tagagtcctg gggttattct 6480 gaactaacac accaaatcag gagattctac tcatggttat tgcaacagca accctttgca 6540 acaatagcgc aggaagggaa ggctccttat atagcaagca tggcattaag gaaattgtat 6600 atggataggg ctgtggatga ggaagagctg agagccttca ctgaaatgat ggtcgcatta 6660 gacgatgagt ttgaatttga ctcttatgaa gtataccatc aagcaaatga cacaatcgat 6720 gcaggaggaa gcagcaagaa agatgcaaga ccagagcaag gcagcatcca gtcaaacccg 6780 aacaaaggaa aagataagga tgtgaatgct ggtacatttg ggacacatac tgtgccgaga 6840 atcaaggcta tcacgtccaa aatgagaatg cccaaaagca agggagcaac cgtgctaaac 6900 ttagaacact tgcttgagta tgctccacaa caaattgata tttcaaatac tcgggcaact 6960 caatcacagt ttgatacgtg gtatgaggca gtgcggatgg catacgacat aggagaaact 7020 gagatgccaa ctgtaatgaa tgggcttatg gtttggtgca ttgaaaatgg aacctcgcca 7080 aatgtcaacg gagtttgggt tatgatggat gggaatgaac aagttgagta cccgttgaaa 7140 ccaatcgttg agaatgcaaa accaaccctt aggcaaatca tggcacattt ctcagatgtt 7200 gcagaagcgt atatagaaat gcgcaacaaa aaggaaccat atatgccacg atatggttta 7260 attcgaaatc tgcgggatgt gggtttagcg cgttatgcct ttgactttta tgaggtcaca 7320 tcacgaacac cagtgagggc tagggaagcg cacattcaaa tgaaggccgc agcattgaaa 7380 tcagcccaac ctcgactttt cgggttggac ggtggcatca gtacacaaga ggagaacaca 7440 gagaggcaca ccaccgagga tgtctctcca agtatgcata ctctacttgg agtcaagaac 7500 atgtgatngt agtgtctctc cggacgatat ataagtattt acatatgcag taagtatttt 7560 ggcttttcct gtactacttt tatcataatt aataatcagt ttgaatatta ctaatagata 7620 gaggtggcag ggtgatttcg tcattgtngg tgactctatc ttttaattcc gcattattaa 7680 gtcttagata aaagtgccgg gttgtcgttg ttgtggatga ttcatcgatt aggtgatgct 7740 gcgattctgt cgtagcagtg actatgtctg gatctatctg ncttgga 7787 //