ID JN936419; SV 1; linear; genomic RNA; STD; VRL; 9552 BP. XX AC JN936419; XX DT 25-OCT-2012 (Rel. 114, Created) DT 25-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Potato virus Y isolate GG517_128 polyprotein-like gene, complete sequence. XX KW . XX OS Potato virus Y OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-9552 RA Visser J.C., Bellstedt D.U.; RT "The molecular and biological characterization of South African isolates of RT PVYNTN: implications for pathogenicity determinants"; RL Unpublished. XX RN [2] RP 1-9552 RA Visser J.C., Bellstedt D.U.; RT ; RL Submitted (26-OCT-2011) to the INSDC. RL Department of Biochemistry, Stellenbosch University, Lab 165, JC Smuts RL Building, Van der Bijl Street, Stellenbosch, Western Cape 7600, South RL Africa XX DR MD5; 45332f50dcafc8622ff954ad7586e708. XX FH Key Location/Qualifiers FH FT source 1..9552 FT /organism="Potato virus Y" FT /host="Solanum tuberosum" FT /strain="Wilga" FT /isolate="GG517_128" FT /mol_type="genomic RNA" FT /country="South Africa" FT /collection_date="25-Oct-2005" FT /db_xref="taxon:12216" FT misc_feature 77..9271 FT /note="similar to polyprotein" XX SQ Sequence 9552 BP; 2943 A; 1796 C; 2255 G; 2544 T; 14 other; attctcttaa cgatattgga aaccatttca actcaacaag taatttcatn cacttccaac 60 caattttaga tcctcaatgg caacttacat gtcaacaatc tgtttcggtt cgtttgaatg 120 caagctacca tactcacccg cctcttgcgg gcatattgtg aaggaacgag aagtgctggc 180 ttccgttgat cctttcgcag atctggaaac acaacttagt gcacgattgc tcaagcaaga 240 atatgctact gttcgtgtgc tcaagaacgg tactcttacg taccgataca agactgatgc 300 ccagataacg cgcatccaga agaaactgga aaggaaggat agggaagaat atcacttcca 360 gatggcagct cctagtattg tgtcaaagat cactattgct ggtggagagc caccttcaaa 420 acttgaatca caagtgcgga ggggtgtcat ccacacaact ccaaggatgc gcacagcaaa 480 aacatatcac acgccaaagt tgacagaggg acaaatgaac caccttatca agcaggtgaa 540 gcaaattatg tcaaccaaag gagggtctgt tcaactgatt agcaagaaaa gtacccatgt 600 tcactataaa gaagttttgg gatcacatcg cgcagttgtt tgcactgcac atatgagagg 660 tttacgacag agagtggact ttcggtgtga taaatggacc gttgtgcgtc tacagcatct 720 cgccaggacg gacaagtgga ataaccaagt tcgtgctact gatctacgca agggcgatag 780 tggagttata ttgagtaata ctaatctcaa aggaagcttt gggagaagct cggagggcat 840 attcatagtg cgtgggtcgc acgaaggaaa aatctatgat gcacgttcca aggttactca 900 aggggttatg gattcaatgg ttcagttctc aagcgctgaa agcttttgga agggattgga 960 cggcaattgg gcacaaatga gatatcctac agatcataca tgtgtggcag gcttaccagt 1020 tgaagactgc ggcagagttg cagcgataat gacacacagt attttaccgt gctataagat 1080 aacctgccct acctgtgccc aacaatatgc caacttgcca gccagtgact tacttaagat 1140 attacacaag cacgcaagtg atggtttaaa tcgattgggg gcagacaaag atcgctttgt 1200 gcatgtcaaa aagttcttga caatcttaga gcacttaact gaaccggttg atctgagtct 1260 agaaattttc aatgaagtat tcaagtctat aggggataag caacaatcac ctttcaaaaa 1320 cctgaatatt ctgaataatt tctttttgaa aggaaaggaa aatacagctc gtgaatggca 1380 ggtggctcaa ttaagcttac ttgaattggc aagattccaa aagaacagaa cggataatat 1440 caagaaagga gacatctcgt tctttaggaa taaactatct gccaaagcaa attggaactt 1500 gtatctgtca tgtgataacc agctggataa gaatgcaaac ttcctgtggg gacagaggga 1560 atatcatgct aagcgatttt tctcgaacta tttcgaggaa attgatccag cgaagggcta 1620 ttcagcatat gaaaatcgtt tgcatccgaa tgggacaaga aaacttgcaa ttggaaacct 1680 aattgtacca cttgatctgg ctgagtttag gcggaagatg aaaggtgatt ataaaagaca 1740 gccaggggtg agtaagaagt gcacgagctc gaaggatgga gactacgtgt atccctgttg 1800 ttgcactaca cttgatgatg gctcagctgt tgaatcaaca ttttacccgc caactaagaa 1860 gcacctcgta ataggtaata gtggcgacca aaagtatgtt gacttaccaa aagggaattc 1920 tgagatgtta tatattgcca ggcaaggctt ctgttacatt aacattttcc tcgcgatgtt 1980 gattaacatt agtgaggaag atgcaaagga tttcactaag aaggttcgtg acgtgtgtgt 2040 gccaaagctt ggaacctggc caaccatgat ggatctggct acaacttgtg ctcaaatgaa 2100 aatattctac cctgatgttc atgatgcaga actgcctaga atactagtcg atcacgaaac 2160 gcagacatgc catgtggttg actcgtttgg ctcacaaaca actgggtatc atattttgaa 2220 agcatctagc gtgtcccaac ttattttgtt tgctaatgat gagttggagt ctgacattaa 2280 acattataga gttggtggtg ttcctaatgc atgccctgaa cttggaacca caatatcacc 2340 tttcagagaa ggaggagtta taatgtctga gtcggcagcg ctgaaactgc ttttgaaggg 2400 aatttttaga ccttaggtga tgagacagtt gctgttagat gagccttatc tgttgattct 2460 atcaatatta tcccctggca tactgatggc catgtacaat aatgggattt ttgaacttgc 2520 ggtaaggttg tggattaatg agaaacaatc catagctatg atagcatcgc tactatcagc 2580 tttagctcta cgagtntcag cggcagaaac actcgtcgca cagaggatta tcattgatgc 2640 tgcagctaca gacctccttg atgctacgtg tgatgggttc aacctacatc taacgtaccc 2700 tactgcattg atggtgttgc aagttgttaa gaatagaaat gaatgtgatg ataccctatt 2760 caaggcgggt tttccaagtt acaacacgag cgtcgtacag atcatggaaa aaaattatct 2820 aaatctcttg gacgatgctt ggaaagattt aacttggcgg gaaaaattat ccgcaacatg 2880 gtactcatac agagcaaaac gctctatcac tcggtacata aaacccacag gaagggcaga 2940 tttgaaaggg ttatacaaca tatcaccaca agcattcttg ggccgaggcg cccaggtggt 3000 caaaggcact gcctcaggat tgagcgagcg atttaataat tatttcaata ctaagtgtgt 3060 aaatatttca tcctttttta ttcgtagaat ctttaggcgt ttgccaactt tcgtcacttt 3120 tgttaactca ttattagtta ttagtatgtt aaccagcgta gtggcagtgt gtcaggcaat 3180 aattttagat cagaggaagt ataggagaga aatcgagttg atgcagatag agaagaatga 3240 gatcgtctgc atggagctat atgcaagttt acagcgcaaa cttgaacgcg atttcacatg 3300 ggatgagtac attgagtatt tgaagtcagt aaaccctcag atagttcagt ttgctcaagc 3360 gcagatggaa gaatatgatg tgcgacacca acgttccaca ccaggtgtta aaaatttgga 3420 acaagtggta gcatttatgg ctttagtcat catggtgttc gatgctgaaa ggagtgattg 3480 cgtgttcaaa actctcaata aatttaaggg tgtcctttcc tcactggacc atgaagttag 3540 acatcagtcc ttagacgatg tgatcaagaa ttttgatgag aggaatgaga ttattgattt 3600 tgaattgagt gaggacacaa ttcgaacatc atcagtgcta gatacaaagt ttagtgattg 3660 gtgggaccga caaatccaga tgggacatac acttccacat tacagaaccg aggggcactt 3720 catggaattc actagagcaa ctgctgtcca agtggctaat gacattgccc atagcgaaca 3780 cctagacttt ctagtaaggg gagctgttgg gtctggaaag tcaactgggt tgcctgttca 3840 tcttagtgta gccggatctg tgcttttaat tgaaccaacg cgaccactag cggagaacgt 3900 tttcaaacag ctatctagtg aaccattctt caagaagcca acactgcgta tgcgtggaaa 3960 tagtatattt ggctcttctc caatctccgt catgactagc gaatttgcgc tacactactt 4020 cgccaataat cgctctcaat tagctcagtt caactttgta atatttgatg agtgccatgt 4080 tctggatcct tccgcaatgg cgttccgtag tctgctgagt gtttatcatc aagcatgcaa 4140 agtattaaaa gtgtcagcta ctccagtggg aagagaggtt gaatttacaa cacagcaacc 4200 agtcaagtta ataggggagg acacactgtc tttccaatca tttgttgatg cacaaggttc 4260 taaaactaat gctgatgttg ttcaatttgg ttcaaacgta cttgtgtacg tgtcgagcta 4320 caatgaagtt gataccttgg ctaagctctt aacagacaag aatatgatgg tcacaaaggt 4380 tgatggcaga acaatgaagc acggttgcct agaaattgtc acaaaaggaa ccagtgcgag 4440 accacatttt gttgtagcaa ccaacataat tgagaatgga gtgactttgg acatagacgt 4500 ggttgtagat tttgggttga aagtctcacc gttcttggac attgacaata ggagcattgc 4560 ttacaataag gtgagtgtta gctatggtga gagaattcaa aggctgggtc gtgttggacg 4620 cttcaagaaa ggagtagcat tgcgcattgg acacactgag aagggaatta ttgaaattcc 4680 aagcatgatc gctacagagg cggctcttgc ttgctttgca tataacttgc cagtgatgac 4740 aggaggcgtc tcaactagtc tgattggtaa ttgtactgtg cgccaagtta aaacaatgca 4800 gcaatttgaa ttgagtccct tctttatcca gaatttcgtt gctcatgatg gatcaatgca 4860 tcctgtcata catgacattc ttaaaaagta taaacttcga gattgtatga cacctttgtg 4920 cgatcaatct ataccataca gggcatcgag cacttggtta tcggttagtg aatatgagcg 4980 acttggagtg gccttagaaa ttccaaagca agtcaaaatt gcattccata tcaaagagat 5040 ccctcctaag ctccacgaaa tgctttggga aacggttgtc aagtataaag acgtttgctt 5100 atttccaagc attcgagcat cgtccatcag caaaatcgca tacacattgc gtacagacct 5160 cttcgccatc ccaagaactc taatattggt ggagagactg cttgaagagg agcgagtgaa 5220 gcaaagccaa ttcagaagtc tcatcgacga aggatgctca agcatgtttt caattgtcaa 5280 cttgacaaac actctcagag ctagatatgc aaaagattac accgcagaga acatacaaaa 5340 actcgagaaa gtgagaagtc aattgaaaga attctcaaat ttggatggtt ctgcatgtga 5400 ggaaaattta ataaagaggt atgagtcttt gcagttcgtt catcaccaag ctgcgacgtc 5460 acttgcaaag gatctcaagt tgaaggggac ttggaagaag tcattagtgg ccaaagactt 5520 gatcatagca ggcgctgttg caattggtgg aataggactc atatatagtt ggttcacaca 5580 atcagttgag actgtgtctc accaagggaa aaataaatcc aaaagaattc aagccttgaa 5640 gtttcgccat gctcgtgaca aaagggctgg ctttgaaatt gacaacaatg atgacacaat 5700 agaggaattc tttggatctg catacaggaa aaagggaaaa ggtaaaggta ccacagttgg 5760 tatgggcaag tcaagcagga ggttcatcaa catgtatggg tttgatccaa cagagtactc 5820 attcatccaa ttcgttgatc cactcactgg ggcgcaaata gaagagaatg tctatgctga 5880 cattagagat attcaagaga gatttagtga agtgcgaaag aaaatggttg agaatgatga 5940 cattgaaatg caagccttgg gcagtaacac gaccattcat gcatacttca ggaaagattg 6000 gtctgacaaa gctttgaaga ttgatttatt gccacatccc ccactcaaag tttgtgacaa 6060 gacaaatggc attgccaaat ttcctgagag agagctcgaa ctaaggcaga ctgggccagc 6120 tgtagaagtc gacgtgaagg acataccagc acaggaggtg gagcatgaag ctaaatcgct 6180 catgagaggc ttgagagact tcaacccaat tgcccaaaca gtttgtaggc tgaaagtatc 6240 tgttgaatat gggacatcag agatgtacgg ttttggattt ggagcataca taatagcgaa 6300 ccaccatttg ttcaggagtt acaatggttc catggaggtg cgatccatgc acggtacatt 6360 cagggtgaag aatctacaca gtttgagcgt tctgccaatt aaaggtaggg atatcatcct 6420 catcaaaatg ccgaaagatt tccctgtctt tccacagaaa ttgcatttcc gagctcctac 6480 acagaatgaa agagtttgtt tagttggaac caactttcag gagaagtatg catcgtcgat 6540 catcacagaa acaagcacca cttacaatat accaggcagc acattcttga agcattggat 6600 tgaaacagat aatggacagt gtggactacc agtggtgagc accaccgatg gatgtctagt 6660 cggaattcac agtttggcaa acaacaaaca caccacgaac tactactcag ccttcgatga 6720 agattttgaa agcaagtatc tccgaaccaa tgagcacaat gaatgggtca agtcttggat 6780 ttataatcca gacacagtgt tgtggggccc gttgaaactt aaagacagca ctcccaaagg 6840 attattcaaa acaacaaagc ttgtgcaaga tctaatcgat catgatgtag tggtggagca 6900 agctaagcac tctgcgtgga tgtttgaagc cttgacagga aatttgcaag ctgtcgcaac 6960 aatgaagagc caattagtaa ccaagcatgt agttaaagga gagtgtcgac acttcaaaga 7020 attcctgact gtggatgcag aagcagaggc annnnnnttc ttcaggcctt tgatggatgc 7080 gtatgggaaa agcttgctga atagagatgc atacatcaag gacataatga agtattcaaa 7140 acctatagat gttggtatcg tggactgtga tgcatttgag gaagccatca atagggttat 7200 catctacctg caagtgcacg gcttcaagaa gtgcgcatac gtcactgacg agcaagaaat 7260 tttcaaagcg ctcaacatga angctgcagt cggagccatg tatggtggca aaaagaaaga 7320 ctattttgag catttcactg atgcagataa ggaagaaata gtcatgcaaa gctgtctgcg 7380 attgtataaa ggcttgcttg gcatttggaa tggatcattg aaggcagagc tccggtgtaa 7440 ggaaaagata cttgcaaata agacgaggac attcactgct gcacctttag acactttgct 7500 gggtggtaaa gtgtgtgttg atgacttcaa taatcaattt tattcaaaga atattgaatg 7560 ctgttggacg gttgggatga ctaagtttta tggtggttgg gataaattgc tgcggcgttt 7620 acctgagaat tnnngggtat actgtgatgc cgatggctca cagtttgata gttcactaac 7680 tccatactta atcaatgctg ttctcaccat tagaagcaca tacatggaag attgggatgt 7740 ggggttgcaa atgttgcgca atttatacac tgagattgtt tacacaccta tttcaactcc 7800 agatggaaca attgttaaga agttcagagg aaataacagt ggtcagcctt ctactgttgt 7860 ggacaactct cttatggtcg tccttgccat gcactatgct ctcatcaaag aatgcattga 7920 gtttgaagag attgacagca cgtgcgtatt ctttgtcaat ggtgatgatt tgctgattgc 7980 tgtgaatccg gataaagagg gcattcttga cagattgtca caacacttct cagatcttgg 8040 tttgaattat gatttctcgt caagaacaag aaataaggag gagttgtggt ttatgtctca 8100 tagaggccta ctgattgagg gcatgtacgt gccgaaactt gaagaagaaa ggattgtgtc 8160 cattctccaa tgggacagag cagacttggc tgaacatagg cttgaggcga tctgcgcagc 8220 tatgatagag tcctggggtt attctgaact aacgcaccaa atcaggagat tctactcatg 8280 gttattgcaa cagcaacctt ttgcaacaat agcgcaggaa gggaaggctc cttatatagc 8340 aagcatggca ttaaggaaat tgtatatgga tagggctgtg gatgaggaag agctgagagc 8400 cttcactgaa atgatggtcg cattagacga tgagtttgaa tttgactctt atgaagtata 8460 ccatcaagca aatgacacaa ttgatgcagg aggaagcagc aagaaagatg caagaccaga 8520 gcaaggcagc atccagtcaa acccgaacaa aggaaaagat aaggatgtga atgctggtac 8580 atctgggaca catactgtgc cgagaatcaa ggctatcacg tccaaaatga gaatgcccaa 8640 aagcaaggga gcaaccgtgc taaacttaga acacttgctt gagtatgctc cacaacaaat 8700 tgatatttca aatactcggg caactcaatc acagtttgat acgtggtatg aggcagtgcg 8760 gatggcatac gacataggag aaactgagat gccaactgtg atgaatgggc ttatggtttg 8820 gtgcattgaa aatggaacct cgccaaatgt caacggagtt tgggttatga tggatgggga 8880 tgaacaagtc gagtacccgt tgaaaccaat cgttgagaat gcaaaaccaa cccttaggca 8940 aatcatggca catttctcag atgttgcaga agcgtatata gaaatgcgca acaaaaagga 9000 accatatatg ccacgatatg gtttaattcg aaatctgcgg gatgtgggtt tagcgcgtta 9060 tgcctttgac ttttatgagg tcacatcacg aacaccagtg agggctaggg aagcgcacat 9120 tcaaatgaag gccgcagcat tgaaatcagc ccaacctcga cttttcgggt tggacggtgg 9180 catcagtaca caagaggaga acacagagag gcacaccacc gaggatgtct ctccaagtat 9240 gcatactcta cttggagtta agaacatgtg attgtagtgt ctctccggac gatatataag 9300 tatttacata tgcagtaagt attttggctt ttcctgtact acttttatca taattaataa 9360 tcagtttgaa tattactaat agatagaggt ggcagggtga tttcgtcatt gtnggtgact 9420 ctatctttta attccgcatt attaagtctt agataaaagt gccgggttgt cgttgttgtg 9480 gatgattcat cgattaggtg atgttgcgat tctgtcgtag cagtgactat gtctggatct 9540 atctgncttg ga 9552 //