ID JN936275; SV 1; linear; genomic RNA; STD; VRL; 3689 BP. XX AC JN936275; XX DT 22-FEB-2012 (Rel. 111, Created) DT 09-AUG-2013 (Rel. 117, Last updated, Version 2) XX DE Citrus leaf blotch virus isolate F1-N replicase polyprotein gene, partial DE cds; and movement protein and coat protein genes, complete cds. XX KW . XX OS Citrus leaf blotch virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Citrivirus. XX RN [1] RP 1-3689 RX DOI; 10.1007/s00705-013-1654-2. RX PUBMED; 23494225. RA Chavan R.R., Blouin A.G., Cohen D., Pearson M.N.; RT "Characterization of the complete genome of a novel citrivirus infecting RT Actinidia chinensis"; RL Arch. Virol. 158(8):1679-1686(2013). XX RN [2] RP 1-3689 RA Chavan R.R., Blouin A.G., Cohen D., Pearson M.N.; RT "Characterization of complete genome of a novel virus infecting Actinidia RT chinensis (isolate M3-A) from China resembling Citrus leaf blotch virus"; RL Unpublished. XX RN [3] RP 1-3689 RA Chavan R.R., Pearson M.N.; RT ; RL Submitted (26-OCT-2011) to the INSDC. RL School of Biological Sciences, University of Auckland, Thomas Building, RL Private Bag 92019, Symonds Street, Auckland, North Island 1142, New Zealand XX DR MD5; f717b9b0995b5426d24e4ed706388945. XX FH Key Location/Qualifiers FH FT source 1..3689 FT /organism="Citrus leaf blotch virus" FT /strain="Actinidia" FT /isolate="F1-N" FT /mol_type="genomic RNA" FT /country="China" FT /isolation_source="Nicotiana benthamiana inoculated with FT leaf sap of Actinidia chinensis" FT /collection_date="01-May-2004" FT /identified_by="Ramesh R. Chavan and Mike N. Pearson" FT /db_xref="taxon:129141" FT CDS <1..918 FT /codon_start=1 FT /product="replicase polyprotein" FT /note="ORF 1" FT /db_xref="GOA:H6VVI3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:H6VVI3" FT /protein_id="AFA43525.1" FT /translation="ALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWC FT RYLETQIRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDICVESDYEAFDASQDEYILSFE FT IHLMKDANFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYE FT WRRGQPIAFAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVK FT EPELVYNRFQVAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFI FT VTHIDKLKTKVRDLFLEQSSDEDI" FT CDS 918..2006 FT /codon_start=1 FT /product="movement protein" FT /note="ORF 2" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:H6VVI4" FT /protein_id="AFA43524.1" FT /translation="MASLINVSSLVNRVKLDQSLIGSDEISKLYGSDAPLVFKDEVKMV FT IPGNAEGEAIKLQANILTADRLQSIRNAKVNGKEAAYLHLGFVPIAIRSLLPSGNEQIW FT GRCALVDTSRTRAETAVIDEFEFKFTKNQPFAAKLLTINAAVDINCKVSVGSIQVLLEL FT HGVDLREERSVAAIITGLTCTPTNKMVLLHKIECDTPKWSLCNIIEQVEDEEESKKAFK FT DMFNASSSNLIDLGQEQWLDEGKRVPIIGNLAIKGFGRKVMPVRRRNLTTKNLMKDYVS FT HVKSETASLKRSQSGRDWGNDRLRKYLEEQASEQARHSVDQQVARIPKLKTIEVTGLET FT VHDLKSKIDRAESSAASDTGTK" FT CDS 2063..3154 FT /codon_start=1 FT /product="coat protein" FT /note="ORF 3" FT /db_xref="GOA:H6VVI5" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:H6VVI5" FT /protein_id="AFA43526.1" FT /translation="MKITNDNATTINYWLAIVEPFLTSDEERNSDDIIQKFRAVVAEHG FT DTEEVDPEVFFAIFSILATKYGRVYSKKVEELNESLKAAILAGAEAEDLINKLKDISQR FT YASQIEITADRELQLENLRKKGHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQFYIPF FT NEYPSLTQSIGTSDVANDEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKDPYD FT GIIKISGKSHMRKDIAYAIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEG FT TKFAAFDFFYAVGSNAAIPTEADGSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHV FT TSSPLYNKGSSYESKNKAKLIEM" FT 3'UTR 3155..3683 XX SQ Sequence 3689 BP; 1170 A; 659 C; 887 G; 973 T; 0 other; gccctcaacg atgtgtttct attcatgaag agccaactgt gcaccaaata tgaaaagcag 60 ttcgttgacg caaaagctgg gcaaactctt gcatgcttcc agcatttgat tttggtccaa 120 tttgcaccgt ggtgcaggta tttggagaca cagatcagaa accagcttcc ggaggagatc 180 tatgtccact caaacaagaa tttcgatgat ctaaaccaat gggttaagaa gttcttccag 240 agggacatat gtgtggaatc ggattatgag gcatttgatg ccagccaaga tgagtacatc 300 ctgtcatttg aaatacatct tatgaaggac gctaattttc ctcagacagt catcgatgct 360 tatatagacc tcaaatgtaa actgggatgc aagttgggac atttctccat catgaggttc 420 accggggaat tttgcacctt tttattcaac actttggcca atatggcctt cacattgtgc 480 agatatgaat ggaggagggg gcagccaatt gcattcgcgg gcgatgatat gtgcgcttta 540 aataatttgc cggtctgtca tgccttcgat gacctttttg aactgatgag tctcaaagca 600 aaagtggaga gaactgagag cccaatgttt tgtggttgga gattgacacc ttacggcata 660 gtcaaagaac ctgagctggt gtataaccgg tttcaggtcg ccattgaaga aggcaaggta 720 atggagtgcc tcgaaaacta tgcaattgag gtttcttacg cctacagttt aagtgagagg 780 ctctatgaag ttttgaaaag tgagagacag attcaatatc atcaggctgt tgtgagattc 840 atagtaacac acatcgacaa gctcaaaaca aaggtaagag atctcttcct ggaacagtcc 900 tctgacgagg atatctaatg gcttccctca ttaatgtaag ctcacttgtg aatagggtta 960 aattagatca gagtttaatt ggtagtgatg aaattagtaa attgtatggt tctgatgcac 1020 cgttggtttt caaagatgag gtcaaaatgg tcatccctgg caatgctgaa ggtgaagcca 1080 tcaagctcca agcaaacatt ctgaccgctg acagattgca atccataagg aatgcaaaag 1140 tcaacggaaa agaggctgct tacttgcacc ttggatttgt tccaatagca attagatcat 1200 tgctgccgtc ggggaatgag caaatttggg ggagatgtgc attggttgac acaagcagga 1260 caagagctga gaccgctgtg atagatgaat ttgagttcaa attcaccaaa aatcaaccgt 1320 ttgcagccaa actattgaca attaatgcag cagttgatat taattgcaag gtcagtgttg 1380 gcagcataca ggttcttctt gaattacatg gagtcgacct tagggaggag cgctctgtag 1440 ctgccataat tacaggtcta acctgtacac ccaccaacaa aatggtgctg ttgcacaaaa 1500 ttgaatgtga tacaccaaaa tggtcgcttt gcaacataat tgagcaggtc gaggatgaag 1560 aagagtcaaa aaaagctttt aaggacatgt tcaatgcctc atcttccaat ttgattgatc 1620 tggggcagga gcagtggttg gatgaaggaa aaagagttcc aattataggt aatctagcaa 1680 tcaaaggatt tgggaggaaa gtgatgcctg ttaggaggag gaatttaacg actaagaacc 1740 tcatgaagga ttatgtgtcc catgttaagt ctgaaactgc gtctttgaaa agaagtcaga 1800 gtggaagaga ttggggcaat gatcgattaa gaaagtattt ggaggagcag gcatcagaac 1860 aggctagaca ttcagtagac caacaggttg caagaattcc aaagcttaaa accattgagg 1920 tgacagggtt agagactgtg catgatctga aaagtaagat agatagggca gagtcatcgg 1980 ctgccagcga cactgggacc aagtgatcag aaccatagga tttagtgtaa atattagatt 2040 agtggtagat tagtgtatat tcatgaaaat caccaatgac aatgccacaa ccatcaacta 2100 ttggttagcc atagttgaac catttctcac atctgatgag gagagaaatt ctgatgacat 2160 cattcaaaaa ttcagagccg tggtggctga gcatggagat acggaagaag tggatcctga 2220 agttttcttt gccattttct ccatccttgc cacaaaatat ggtagagttt actcaaaaaa 2280 agttgaggaa ttgaatgagt cactcaaggc tgcaatattg gcaggagctg aggcagagga 2340 tttgataaat aaacttaagg atatttctca aaggtatgcc tcacagattg aaataacagc 2400 agatagggaa ttgcagctgg agaatttgag gaaaaaaggg catgaacaac cgctgaccgg 2460 cagtggatct tctgaaccgg cacacaatga gccagcacat actccacagc tgcatgtggt 2520 gaacgatttg cagcagttct acataccatt taatgaatat ccaagcctga cgcaatcgat 2580 cggtacctct gatgttgcaa atgatgagca tctcaaaaga gtgcagctta cactcaaaat 2640 cacagacaca aaggttttct caagaactgg atttgagttt gcgataagct gtggatcaag 2700 gagcacatca gacaaggacc catatgatgg tatcattaaa ataagtggga aaagtcacat 2760 gagaaaagat attgcatatg caataagaac ctcagggatt acagtgaggc aattttgtgc 2820 cgcctttgca aatttgtact ggaatttcaa tcttgccagg aacacacctc ctgaaaactg 2880 gaggaagaag ggatttactg agggaactaa atttgcggct tttgactttt tctacgcggt 2940 aggcagtaat gcagcaattc caacagaagc tgatggaagt gttagattaa tcaggcctcc 3000 aacgaatgag gagaatgagg ccaattctgc tatgaggtat gctgacatat atgagcaaaa 3060 ttccaaaact gctggacatg tgacctcgag tccattgtac aacaagggta gcagttatga 3120 aagtaaaaat aaagctaagc tcatagagat gtaaactggc gtgggtggaa gggcgggcca 3180 gaactttagc cttaaagtat aagtaaggca gggattgact cgttgattgc ctagttcaat 3240 gagtgcctca taaatcctag gttatgatgc taaaggggat accgcgatct gagagccatg 3300 gggaccaaca gaaaaaccga actcccatta agtgtgaggt tacgctgtgt ccgacactca 3360 aaaaggtgag ctgaacctga tccaaatgac ttaggtacag gttagactta taagctttgt 3420 gtaattgaaa gccaattcat caaagataca tgatctttac tgattgtgga acgttgtgat 3480 gagtgaaacg cttaagcttg ggtgttagtc aagtagtcgt tggcagtgtt acgtgaaact 3540 gctcaataaa catgaacggt ttctatatcc tctttacgtt cattattgtt gaggacgtgt 3600 gcttttcttc ttatgtcgtt aaataagtta aaatacatcc aacttaatgg atgatgtaaa 3660 gatgtctttt aagaactttt agaatcgaa 3689 //