ID JN880419; SV 1; circular; genomic DNA; STD; VRL; 2740 BP. XX AC JN880419; XX DT 13-FEB-2012 (Rel. 111, Created) DT 15-MAY-2014 (Rel. 120, Last updated, Version 4) XX DE Pepper leaf curl Lahore virus-[Solanum capsicastrum] segment DNA-A, DE complete sequence. XX KW . XX OS Pepper leaf curl Lahore virus-[Solanum capsicastrum] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2740 RA Srivastava A., Snehi S.K., Raj S.K.; RT "First report of a variant of Pepper leaf curl Lahore virus on winter RT cherry in India"; RL New Dis. Rep. 27:7-7(2013). XX RN [2] RP 1-2740 RA Raj S.K., Snehi S.K., Srivastava A.; RT ; RL Submitted (20-OCT-2011) to the INSDC. RL Plant Molecular Virology, CSIR-National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U. P. 226001, India XX DR MD5; 48acd8d796dce9c937970556d320bef0. XX FH Key Location/Qualifiers FH FT source 1..2740 FT /organism="Pepper leaf curl Lahore virus-[Solanum FT capsicastrum]" FT /segment="DNA-A" FT /host="Solanum capsicastrum (winter cherry)" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="Dr. S. K. Raj" FT /collection_date="16-Sep-2011" FT /db_xref="taxon:1143713" FT gene 145..510 FT /gene="AV2" FT CDS 145..510 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:H6VTU1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H6VTU1" FT /protein_id="AFA26460.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLLENTYSPDTLGYDLIRDL FT ISVIRAKNYVQATSRYNHFHARLEGTPPSQLRQPLCQPCCCPHCPRHKGQSMGEQAHEQ FT EAQDVQDVQKPRCSKGV" FT gene 305..1075 FT /gene="AV1" FT CDS 305..1075 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:H6VTU2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H6VTU2" FT /protein_id="AFA26461.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPTVRVTKARAWV FT NRPMNRKPRMYRMYRSPDVPRGCEGPCNVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLREIWMDESIKTKNLTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPGYATLKIRIYFYDSVSN" FT gene complement(1072..1476) FT /gene="AC3" FT CDS complement(1072..1476) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:H6VTU3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H6VTU3" FT /protein_id="AFA26462.1" FT /translation="MDSRTGEPITAAQAENSVFIWEITNPLYFKITEHHNRPFLRNHDI FT ITVQIRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVYKYLNNFAVISINN FT VLRAVNHVLWNVLAQTIHVQSSNIIKFNLY" FT gene complement(1217..1621) FT /gene="AC2" FT CDS complement(1217..1621) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator protein" FT /db_xref="GOA:H6VTU4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H6VTU4" FT /protein_id="AFA26463.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREFRVYLGDNKSPVFQDNRAPQPAIPEEPRHHHRADTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1524..2651) FT /gene="AC1" FT CDS complement(1524..2651) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:H6VTU5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H6VTU5" FT /protein_id="AFA26464.1" FT /translation="MSPIPQSFECPQFNMPRLNSFCVNAKNIFLTYPKCPIPKEQMLEI FT LQSINCPSDKLFIRVAQEKHQDGSLHIHALIQFKGKSKFRNPRHFDVTHPNNSTQFHPN FT FQGAKSSSDVKSYIEKDSDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSADAALAI FT IREKLPKDFIFQYHNLKCNLDRIFTPPVEVYVSPFLSSSFNQVPEELEEWAAENVLGDA FT ARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHY FT LKHFKEFKGAQRDWQSNTKYGKPVQIKGGIPAIPLCNPGPNSSYKEFLDEEKNSALKNW FT ALKNATFITLEGPLYSGSNQSAAQAGQEGDQASSG" FT gene complement(2195..2452) FT /gene="AC4" FT CDS complement(2195..2452) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H6VTU6" FT /protein_id="AFA26465.1" FT /translation="MGLCISMPSSSSKVNPSSETPDISMSLTLITPPNSTQTSRELSPA FT LMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMQQQRP" XX SQ Sequence 2740 BP; 730 A; 550 C; 648 G; 812 T; 0 other; accggatggc cgcgattttt tttagtgggc cccacaacac acgtgctgac aatgacatgt 60 ggaccaatta aaatcgtccc tcatagctta attatttcat ggtcccctat ttaaacttgg 120 gctccaagta gtgcactctt aacaatgtgg gatccattag taaacgagtt tcctgaaacc 180 gttcacggtt ttaggtgtat gttagcagtt aaatatctgc agctactaga aaatacatat 240 tctccagaca ctctggggta cgatttaatc agggatttga tctccgttat tagggctaag 300 aattatgtcc aagcgaccag cagatataat catttccacg cccgcctcga aggtacgccg 360 ccgtctcaac ttcgacagcc cttatgccag ccgtgctgct gcccccactg tccgcgtcac 420 aaaggccaga gcatgggtga acaggcccat gaacaggaag cccaggatgt acaggatgta 480 cagaagccca gatgttccaa gggggtgtga aggcccatgt aacgtccagt cttttgagtc 540 tagacacgat gtagttcata tagggaaggt tatgtgtatt agtgatgtta cccgtggtac 600 tgggttaacc catagagtag gtaagcgttt ctgtgttaag tctgtgtacg tattacgtga 660 gatatggatg gatgagagta tcaagactaa gaatcttacg aatagtgtga tgtttttcct 720 tgtccgtgat cgtcgtcctg ttgataaacc acaagatttt ggagaggtgt tcaacatgtt 780 tgacaacgag cctagcactg ccactgtgaa aaatatgcat agagatcgtt atcaggtttt 840 gaggaaatgg cacgcaacgg ttactggtgg acagtacgcg tcgaaggaac aggcattagt 900 gaagaagttc gttagggtta ataattatgt tgtgtataac cagcaggaag ctggtaaata 960 tgagaatcat actgagaatg cattgatgtt gtacatggcg tgtactcacg cctctaatcc 1020 cgggtatgct accttaaaga tacggatcta tttctatgat tcagtatcaa attaataaag 1080 attgaatttt attatatttg aactttgtac atgaattgtt tgtgctaata cattccataa 1140 tacatggttg acagctctaa gtacattgtt tatactaatt acagcaaaat tatttaaata 1200 cttatacact tgggtcctaa atacccttaa gaaatgacca gtctgaggct gtaaggtcgt 1260 ccagattcgg aaggttagaa aacatttgtg tatccccaac gctttcctca ggttgtgatt 1320 gaaccgtatc tgcacggtga tgatgtcgtg gttcctcagg aatggccggt tgtggtgctc 1380 tgttatcttg aaatacaggg gatttgttat ctcccagata aacacggaat tctcggcttg 1440 agctgcagtg atgggttccc ctgtgcgtga atccatagcc gtggcagcgt aatgcgatga 1500 aatatgaaca accgcagtct aggtcaaccc gacgacgcct ggtccccttc ttggccagcc 1560 tgtgctgcac tttgattgga acctgagtag agtgggcctt cgagggtgat gaaggtcgca 1620 ttctttaaag cccaattttt gagtgcgcta ttcttctctt catccaagaa ctctttatag 1680 ctggaattgg gtcctggatt gcagagggga atagcgggaa ttccaccttt aatttgaact 1740 ggctttccgt atttagtgtt tgattgccag tccctttggg cccccttgaa ttctttaaag 1800 tgctttaggt agtggggatc gacgtcatca atgacgttgt accaggcgtc attactgtag 1860 acctttgggc taaggtcgag atgtccacac aaatagttgt gtggacctag tgacctggcc 1920 cacattgtct tgcctgttct actatcgccc tctatgacaa tacttatggg tcttaacggc 1980 cgcgcagcgt caccgagaac attctcggca gcccattcct caagttcttc aggaacttga 2040 ttaaaagaag aagataaaaa aggagaaaca taaacctcta caggaggtgt aaaaatccta 2100 tctaaattac attttaaatt atgatattga aaaataaaat ctttagggag tttttcccta 2160 attattgcta aagctgcgtc agctgaacct gcatttaggg cctctgctgc tgcatcatta 2220 gctgtctgtt gacctcctcg agcagatctt ccatcgatct gaaactgacc ccagtcgatg 2280 taatcactgt ccttctcgat gtaggacttg acatcagagc tggacttagc tccctggaag 2340 tttgggtgga attgggtgga gttattaggg tgagtgacat cgaaatgtct ggggtttctg 2400 aacttggatt tacctttgaa ctggatgagg gcatggatat gcagagaccc atcttggtgt 2460 ttttcttgtg ccactctgat aaataattta tcagatgggc aatttattga ctgaagaatc 2520 tcgagcattt gctctttggg tattgggcat tttggataag tgaggaagat atttttggca 2580 ttaacacaaa aagagttaag acgaggcata ttgaattggg gacactcaaa actctgagga 2640 atgggggaca ttggggacgc atttatatgg tgtccccaaa tggtcttttc gtaatttgca 2700 caactttaat tcaaataccc gataatcgcg gccatccgta 2740 //