ID JN880418; SV 1; circular; genomic DNA; STD; VRL; 2735 BP. XX AC JN880418; XX DT 13-FEB-2012 (Rel. 111, Created) DT 23-JUN-2016 (Rel. 129, Last updated, Version 6) XX DE Cotton leaf curl Multan virus-[Hibiscus rosa-sinensis] isolate 1(Yellow DE flower) segment DNA-A, complete sequence. XX KW . XX OS Cotton leaf curl Multan virus-[Hibiscus rosa-sinensis] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2735 RA Raj S.K., Srivastava A., Snehi S.K.; RT "Molecular identification of Cotton leaf curl Multan virus associated with RT leaf curl disease of Hibiscus rosa-sinensis L.in India"; RL Unpublished. XX RN [2] RP 1-2735 RA Raj S.K., Srivastava A., Snehi S.K.; RT ; RL Submitted (20-OCT-2011) to the INSDC. RL Plant Molecular Virology, CSIR-National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U. P. 226001, India XX DR MD5; d4512f95927443653232c79513ee23dd. XX FH Key Location/Qualifiers FH FT source 1..2735 FT /organism="Cotton leaf curl Multan virus-[Hibiscus FT rosa-sinensis]" FT /segment="DNA-A" FT /host="Hibiscus rosa-sinensis L." FT /isolate="1(Yellow flower)" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="Dr. S. K. Raj" FT /collection_date="16-Sep-2011" FT /db_xref="taxon:1143709" FT gene 116..481 FT /gene="AV2" FT CDS 116..481 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:H6VTT5" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:H6VTT5" FT /protein_id="AFA26454.1" FT /translation="MWDPLVNEFPDTVHGFRCMLSVKYLQLLSQDYSRETLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTSSSKLRQPIHQPFCCINCPRHKTTGMDKQAYEQ FT EAQNVSDVQKSGCSKGL" FT gene 276..1046 FT /gene="AV1" FT CDS 276..1046 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="involved in encapsidation of virion" FT /db_xref="GOA:H6VTT6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H6VTT6" FT /protein_id="AFA26459.1" FT /translation="MSKRAAGIVISTPASKVRRRLNFGSPYTNRFAVLIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPKGCEGPCKVQSFESRQIRQCIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTKNHTHSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1049..1453) FT /gene="AC3" FT CDS complement(1049..1453) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="increases viral replication" FT /db_xref="GOA:H6VTT7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H6VTT7" FT /protein_id="AFA26455.1" FT /translation="MDSRTGEPITAAQAGNGAYIWDVPNPLYFKIISHVNRPFTMNMDI FT FTIRIQFNYNTRKALNLHKCFLTFRIWTTLHPQTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLFNVIKQTMYVDQYSEIKFNLY" FT gene complement(1146..1598) FT /gene="AC2" FT CDS complement(1146..1598) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator protein" FT /note="transcriptional activator for virus sense genes" FT /db_xref="GOA:H6V7U2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H6V7U2" FT /protein_id="AFA26456.1" FT /translation="MRSSSLSKDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHKHGFSHRGTHHCSSSREWRIYLGRSKSPLFQDHQPRQPSIHDEHGHIHDQDPVQLQY FT SESSESAQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISEQSRCNFN" FT gene complement(1495..2583) FT /gene="AC1" FT CDS complement(1495..2583) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /note="involved in virus replication" FT /db_xref="GOA:H6VTT9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H6VTT9" FT /protein_id="AFA26457.1" FT /translation="MPPKRFLVNSKNYFITYPRCSLTKEEALSQLQNIQTPTSKKYIKI FT CRELHENGEPHLHVLIQFQGKYKCQNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYID FT KDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRIIKELAPIDGVQQFHN FT LNANLDRIFQEPPAPYISPFSPSSFDQVPEELEEFALDNVVDDAARPLRPQSIVNEGDS FT CAGKTMWARSLGPHNYLSGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLNEEKNTALKNWAVKNAIFITLEGPLY FT SGTNQSTAQGSEEAQQEEESRS" FT gene complement(2127..2429) FT /gene="AC4" FT CDS complement(2127..2429) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H6VTU0" FT /protein_id="AFA26458.1" FT /translation="MGNLICTCSSSSKGNTSARISDSSTWSPQAGQHISIRTFRELNQA FT QMSSPTSTRTGTLSSGESFRSMEDQQGEDNRQPTTLTPQHLTQEVSQRLLESLRN" XX SQ Sequence 2735 BP; 727 A; 545 C; 640 G; 823 T; 0 other; accggatggc cgcgattttt ttttgtgggc ccccgattga tgagattgct ccctgaaagc 60 taaataaagc tcccgcccac tataagtact tgcgcactaa gtttcaaatt gaaacatgtg 120 ggatccactg gtaaacgaat tccctgatac ggtgcacggg tttcggtgta tgctttctgt 180 caaatatctg caacttttat cacaggatta ttcaagagaa accctaggtt acgagttaat 240 acgggactta atctgtattt tacgttcccg taattatgtc gaagcgagct gcaggtatcg 300 tcatttctac gcccgcgtcg aaagtacgtc gtcgtctaaa cttcggcagc ccatacacca 360 accgttttgc tgtattaatt gtccgcgtca caaaacaaca ggcatggaca aacaggccta 420 tgaacaggaa gcccagaatg tatcggatgt acagaagtcc ggatgttcca aagggttgtg 480 aaggcccatg taaggtacag tcgtttgagt cgagacagat tcgtcaatgt attggtaagg 540 taatgtgtat ttcggatgtt acgcgtggag tcggtttgac ccatcgtata ggtaagcgtt 600 tttgtgtcaa gtcagtttat gttttaggta agatatggat ggacgagaac atcaagacca 660 agaaccatac gcattcggtg atgttctttt tagtccgcga tcgacgtcct gttgacaaac 720 ctcaggattt tggtgaggta ttcaatatgt ttgacaacga acccagtaca gcaactgtga 780 agaatagtca tagggaccgt tatcaggtgt tgaggaaatg gcatgcaacc gttacgggtg 840 gtcaatatgc gagtaaggaa caggccttgg tcaagaagtt tgtcagagtt aataattatg 900 ttgtttacaa tcaacaggaa gcaggaaaat acgagaatca tactgaaaat gcgttaatgc 960 tttatatggc ttgtacccac gctagcaacc ctgtttatgc tacgttgaag attaggatat 1020 atttttatga ctctgtatcg aattgatatt aataaagatt gaattttatt tctgaatatt 1080 gatctacata catagtttgt ttgattacat tgaacaatac atgttctaca gctttaataa 1140 ctaaattaat tgaaattaca ccgagattgt tcagatattt gaggacttgg gttttgaata 1200 cccttaagaa aagaccagtc tgagggtgta aggtcgtcca gattcggaag gttagaaaac 1260 acttgtgcag attcagagct ttccgagtat tgtagttgaa ctggatcctg atcgtgaata 1320 tgtccatgtt catcgtgaat ggacggttga cgtggctgat gatcttgaaa taaaggggat 1380 ttggaacgtc ccagatatat gcgccattcc ctgcttgagc tgcagtgatg ggttcccctg 1440 tgcgagaatc catgcttgtg acagttgatt gagagataat aagaacaccc gcattcaaga 1500 tctactctcc tcctcctgtt gcgcctcttc gcttccctgt gctgtacttt gattggtacc 1560 tgagtacagg ggtccttcga gagtgatgaa gatcgcattc tttactgccc aattctttaa 1620 tgcggtgttc ttttcctcgt tgaggaattc tttataactg ctgttgggac caggattgca 1680 caagaagatt gtcggtatcc cgcctttaat ttgaactggc ttcccgtatt ttgtgttgga 1740 ctgccagtct ctttgggccc ccataaactc cttaaagtgt tttaggaaat gcggatcgac 1800 gtcatcaatg acgttatacc aggcgtcgtt actgtagacc ttgggactca ggtccagatg 1860 tccagacaaa tagttatgtg gtcccaatga cctagcccac atcgtcttcc ccgcacaact 1920 atctccttca tttacaatac tttgaggtct aaggggccgc gcagcgtcat cgacaacgtt 1980 atccaacgcg aactcttcga gttcttctgg aacttgatcg aaagaggaag gagaaaaagg 2040 agaaatatag ggagccggtg gctcctgaaa gattctgtct agatttgcat ttaaattatg 2100 aaactgttgt actccatcaa taggagctaa ttccttaatg attctaagag cctctgactt 2160 acttcctgcg ttaagtgctg cggcgtaagc gtcgttggct gtctgttgtc ctccccttgc 2220 tgatcttcca tcgatctgaa actctcccca ctcgagagtg tccccgtcct tgtcgatgta 2280 ggacttgaca tctgagcttg atttagctcc ctgaatgttc ggatggaaat gtgctgacct 2340 gcttggggag accaggtcga agaatcgctg attctggcac ttgtatttcc cttggaactg 2400 gatgagcacg tgcagatgag gttccccatt ttcatgaagt tctctgcaga ttttaatata 2460 tttttttgaa gtgggggttt gaatattttg gagttgggaa agtgcttcct ctttggttag 2520 agagcacctg ggataagtta tgaaataatt tttggagtta acaaggaaac gctttggagg 2580 catgttgact aagatagagg accgattgac cgctcttgca actctcccct gtaaattggg 2640 tctcaatata tagtgagacc caaatggcat aatggtaata acaaaacttt aatttggaat 2700 tcaaaagaaa aggctaaagc ggccatccgt ataat 2735 //