ID JN859138; SV 1; circular; genomic DNA; STD; VRL; 2772 BP. XX AC JN859138; XX DT 30-NOV-2012 (Rel. 115, Created) DT 30-NOV-2012 (Rel. 115, Last updated, Version 1) XX DE Tomato yellow leaf curl Axarquia virus isolate Portugal:Algarve 38:Solanum DE nigrum:2002, complete genome. XX KW . XX OS Tomato yellow leaf curl Axarquia virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2772 RA Fiallo-Olive E., Trenado H.P., Louro D., Navas-Castillo J.; RT "First detection and diversity of recombinant species of the tomato yellow RT leaf curl virus complex in Portugal"; RL Unpublished. XX RN [2] RP 1-2772 RA Fiallo-Olive E., Trenado H.P., Louro D., Navas-Castillo J.; RT ; RL Submitted (14-OCT-2011) to the INSDC. RL Fruticultura Subtropical y Fitopatologia, Instituto de Hortofruticultura RL Subtropical y Mediterranea 'La Mayora', Estacion Experimental La Mayora, RL Algarrobo-Costa, Malaga 29750, Spain XX DR MD5; 1e22bcd45f6d183f5da618a407cdbfaf. DR EuropePMC; PMC6362282; 30718735. XX FH Key Location/Qualifiers FH FT source 1..2772 FT /organism="Tomato yellow leaf curl Axarquia virus" FT /host="Solanum nigrum" FT /isolate="Portugal:Algarve 38:Solanum nigrum:2002" FT /mol_type="genomic DNA" FT /country="Portugal" FT /collection_date="Sep-2002" FT /db_xref="taxon:232380" FT gene 142..489 FT /gene="V2" FT CDS 142..489 FT /codon_start=1 FT /gene="V2" FT /product="precoat protein" FT /db_xref="GOA:Q2VYC2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q2VYC2" FT /protein_id="AFQ60626.1" FT /translation="MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDL FT ISVIRARDYAEANRRYTNFNARLEGSSKTELRQPVYQPCCCPHCPRHQASIMDLQAHVS FT KAADVQNVQKP" FT gene 302..1078 FT /gene="V1" FT CDS 302..1075 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:Q2VYC1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q2VYC1" FT /protein_id="AFQ60627.1" FT /translation="MPKRTGDILISTPVSKVRRKLNFDSPYTSRAAAPTVQGIKRRSWT FT YRPMYRKPRMYRMYRSPDVPFGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHR FT VGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDNE FT PSTATVKNDLRDRYQVMRKFHATVVGGPSGMKEQCLLKRFFKVNTHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1072..1476) FT /gene="C3" FT CDS complement(1072..1476) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancement protein" FT /db_xref="GOA:K7PRM6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K7PRM6" FT /protein_id="AFQ60628.1" FT /translation="MDLRTGEYITAHQATSGVYTFEITNPLYFTITRHNQQPFNSKYNL FT LTFQIRFNHNLRKALGIHKCFLNFRIWTTLQSPTGHFLRVFRFQVYKYLNNIGVISLNN FT VIRAVDYVLFDVFENTIDVIEQHEIKYNLY" FT gene complement(1217..1624) FT /gene="C2" FT CDS complement(1217..1624) FT /codon_start=1 FT /gene="C2" FT /product="transactivator protein" FT /db_xref="GOA:K7PRS7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K7PRS7" FT /protein_id="AFQ60629.1" FT /translation="MQSSSPSTSHCSQIPIKIQHHIAKKRQVRRRRVDLDCGCSYYIHL FT DCINHGFTHRGVHHCASSNEWRLYLRDNKSPIFHDNQTQPTTIQQQIQFTNISNQVQPQ FT LEEGTGDSQMFSQLPHLDDLTVSDWSFFKSL" FT gene complement(1533..2606) FT /gene="C1" FT CDS complement(1533..2606) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein" FT /db_xref="GOA:K7PRP0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K7PRP0" FT /protein_id="AFQ60630.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC FT RELHDNGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGIFQIDGRSARGGQQSANDAYAEALNSGNKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPQSSFKEYLDEEKNQTLKNWAIKNAIFVTIHQPLFT FT NTNQDPTPHRQEETSEA" FT gene complement(2162..2455) FT /gene="C4" FT CDS complement(2162..2455) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q2VYB7" FT /protein_id="AFQ60631.1" FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTDQHISIRTFRQLRAQ FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAINPRPSIY" XX SQ Sequence 2772 BP; 764 A; 507 C; 607 G; 894 T; 0 other; accggatggc cgcgctcccc gataaagtag tgggccctac gcagtaattt gtgtcgacca 60 atgaaaatgc agcctcaaag cttaaataat gtatttactt tgttataaac ttggcttcta 120 agttttgaaa aaaccatcaa tatgtgggat cctttattaa atgaatttcc agattcagtt 180 catggtctcc gttgtatgct tgcaataaaa tatttgcagc tagttgaaga aacctatgaa 240 cccaatactc tgggtcacga tctaattagg gatctcattt ccgtcattcg tgctcgtgac 300 tatgccgaag cgaacaggcg atatactaat ttcaacgccc gtctcgaagg ttcgtcgaaa 360 actgaacttc gacagcccgt ataccagccg tgctgctgcc cccactgtcc aaggcatcaa 420 gcgtcgatca tggacttaca ggcccatgta tcgaaagccg cggatgtaca gaatgtacag 480 aagccctgat gtcccctttg gttgtgaagg tccttgtaaa gtccagtcgt atgagcagcg 540 tgacgacgtc aagcataccg gtgttgttcg ttgtgttagt gatgtaacta ggggttctgg 600 tattacacat agagtaggta aacggttttg tattaagtca atctatattt tagggaagat 660 ttggatggat gaaaatataa aaaaacaaaa tcatactaat caggtcatgt tctttttagt 720 acgagaccga aggccgtatg gaactagtcc tatggatttt ggtcaagttt ttaacatgtt 780 tgataatgaa cctagtacgg ctactgtgaa gaacgattta agggataggt atcaagtaat 840 gaggaagttc catgccacgg tggtaggtgg tccgtcaggg atgaaggagc agtgtctgtt 900 gaaaaggttt tttaaagtta atacccatgt agtttataat catcaagagc aggcgaagta 960 tgaaaaccat actgagaatg cgttgttgtt gtatatggca tgtactcatg cttctaaccc 1020 agtgtatgct acgttgaaaa tacgtatcta tttttatgat gctgtaacaa attaataaag 1080 attgtatttt atttcatgtt gttcaattac atctattgtg ttctcaaata catcgaataa 1140 gacataatca actgctctaa tcacattgtt taatgaaatt acacctatat tattcaaata 1200 cttatacact tgaaacctaa agactcttaa aaaatgacca gtcggagact gtaaggtcgt 1260 ccagatgcgg aagttgagaa aacatttgtg aatccccagt gccttcctca agttgtggtt 1320 gaacctgatt tgaaatgtta gtaaattgta tttgctgttg aatggttgtt ggttgtgtct 1380 ggttatcgtg aaatataggg gatttgttat ctcgaaggta taaacgccac tcgttgcttg 1440 atgcgcagtg atgtactccc ctgtgcgtaa atccatggtt tatgcagtct aaatgtatat 1500 agtatgaaca gccacagtcc agatctaccc ttctacgcct cacttgtctc ttcttggcga 1560 tgtggtgttg gatcttgatt ggtatttgtg aacaatggct ggtggatggt gacgaagatt 1620 gcatttttta tggcccaatt ttttaatgtt tgattttttt cttcgtcgag gtattcttta 1680 aatgatgatt gtgggcctgg attgcagagg aagatagtgg gtatgcctcc tttaatttga 1740 atgggcttcc cgtactttgt gttgctttgc cagtccctct gggcccccat gaattccttg 1800 aagtgcttta aataatgcgg gtctacgtca tcaatgacgt tgtaccacgc atcattactg 1860 tacacctttg ggcttaggtc tagatgtcca cataaataat tatgtgggcc tagagacctg 1920 gcccacattg ttttgcctgt tctgctatca ccctcaatta caatacttat gggtctccat 1980 ggccgcgcag cggaagacac gacgttctca gcgacccact cttcaagttc atctggaact 2040 tgattaaaag aagaagaaag aaatggagaa acataaactt ctaaaggagg actaaaaatc 2100 ctatctaaat ttgaacttaa attatgaaat tgtaaaatat agtcctttgg ggccttctct 2160 tttaatatat tgagggcctc ggatttattg cctgaattga gtgcttcggc atatgcgtcg 2220 ttggcagatt gctgacctcc tctagctgat ctgccatcga tttggaaaat tccaaaatca 2280 atgaagtctc cgtctttctc cacgtaggtc ttgacatctg ttgagctctt agctgcctga 2340 atgttcggat ggaaatgtgc tgatctgttt ggggatacca ggtcgaagaa ccgttggttc 2400 ttacattggt atttgccttc gaattggata agcacatgga gatgtggttc cccattatcg 2460 tggagttctc tgcaaacttt gatgtatttt ttatttgttg gggtttctag gttttttaat 2520 tgggaaagtg cttcctcttt agagagagaa caattgggat atgttaggaa ataatttttg 2580 gcatatattt taaataaacg aggcatgttg aaatgaatcg gtgtccctca aagctctatg 2640 gcaatcggtg tatcggtgtc ttatttatac ctggacacgt aatggctatt tggtaatttc 2700 gtaaaagtac attgcaattc aaaattcaaa attcaaaaat caaatcatta aagcggccat 2760 ccgtataata tt 2772 //