ID JN859135; SV 1; circular; genomic DNA; STD; VRL; 2782 BP. XX AC JN859135; XX DT 30-NOV-2012 (Rel. 115, Created) DT 30-NOV-2012 (Rel. 115, Last updated, Version 1) XX DE Tomato yellow leaf curl Malaga virus isolate Portugal:Algarve 2:2001, DE complete genome. XX KW . XX OS Tomato yellow leaf curl Malaga virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2782 RA Fiallo-Olive E., Trenado H.P., Louro D., Navas-Castillo J.; RT "First detection and diversity of recombinant species of the tomato yellow RT leaf curl virus complex in Portugal"; RL Unpublished. XX RN [2] RP 1-2782 RA Fiallo-Olive E., Trenado H.P., Louro D., Navas-Castillo J.; RT ; RL Submitted (14-OCT-2011) to the INSDC. RL Fruticultura Subtropical y Fitopatologia, Instituto de Hortofruticultura RL Subtropical y Mediterranea 'La Mayora', Estacion Experimental La Mayora, RL Algarrobo-Costa, Malaga 29750, Spain XX DR MD5; 007cdeda86e16af3bb2a9a212238c7d2. DR EuropePMC; PMC6362282; 30718735. XX FH Key Location/Qualifiers FH FT source 1..2782 FT /organism="Tomato yellow leaf curl Malaga virus" FT /host="tomato" FT /isolate="Portugal:Algarve 2:2001" FT /mol_type="genomic DNA" FT /country="Portugal" FT /collection_date="Mar-2001" FT /db_xref="taxon:219744" FT gene 142..489 FT /gene="V2" FT CDS 142..489 FT /codon_start=1 FT /gene="V2" FT /product="precoat protein" FT /db_xref="GOA:K7PRM2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:K7PRM2" FT /protein_id="AFQ60608.1" FT /translation="MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDL FT ISVIRARDYAEANRRYTNFNARLEGSSKTELRQPVYQPCCCPHCPRHQASIMDLQAHVS FT KAADVQNVQKP" FT gene 302..1078 FT /gene="V1" FT CDS 302..1075 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:K7PRQ0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:K7PRQ0" FT /protein_id="AFQ60609.1" FT /translation="MPKRTGDILISTPVSKVRRKLNFDSPYTSRAAAPTVQGIKRRSWT FT YRPMYRKPRMYRMYRSPDVPFGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHR FT VGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDNE FT PSTATVKNDLRDRYQVMRKFHATVVGGPSGMKEQCLLKRFFKVNTHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1072..1476) FT /gene="C3" FT CDS complement(1072..1476) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancement protein" FT /db_xref="GOA:K7PRN6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K7PRN6" FT /protein_id="AFQ60610.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFTITRHNQQPFNSKYNL FT LTFQIRFNHNLRKALGIHKCFLNFRIWTTLQSPTGHFLRIFRFQVYKYLNNIGVISLNN FT VIRAVDYVLFDVFENTIDVIEQHEIKYNLY" FT gene complement(1217..1624) FT /gene="C2" FT CDS complement(1217..1624) FT /codon_start=1 FT /gene="C2" FT /product="transactivator protein" FT /db_xref="GOA:K7PRP8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K7PRP8" FT /protein_id="AFQ60611.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPIFHDNQTQPTTIQQQIQFTNISNQVQPQ FT LEEGTGDSQMFSQLPHLDDLTVSDWSFFKNL" FT gene complement(1533..2612) FT /gene="C1" FT CDS complement(1533..2612) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein" FT /db_xref="GOA:K7PRS6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K7PRS6" FT /protein_id="AFQ60612.1" FT /translation="MAPPKRFQINCKNYFLTYPKCSLTKEEALSQLKDLETPTNKKYIK FT VCRELHENGEPHLHVLIQFEGKFKCQNQRFFDLVSPSRAAHFHPNIQGAKSSSDVKSYV FT DKDGDTVDWGEFQIDGRSARGGQQSANDAYAAALNSGSKSEALRIIKELIPKDYILQFH FT NLNSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVVSSAARPWRPNSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPL FT FASINQGPTQDSQEETNKA" FT gene complement(2153..2455) FT /gene="C4" FT CDS complement(2153..2455) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K7PRN9" FT /protein_id="AFQ60613.1" FT /translation="MGNHISMCLSNLKGNSSAKISDSSTWYPQAGQHISIQTFRELNPV FT QTSSLMSIRTETPSTGVSFRSTDDLHVGVSSQPMTLTPQLLTQAVSRRLLESLKN" XX SQ Sequence 2782 BP; 767 A; 524 C; 617 G; 874 T; 0 other; accggatggc cgcgctcccc ggtaaagtag tgggccctac gaactaattt gtgtcgacca 60 atgaaaatgc agcctcaaag cttaaataat gtatttactt tgttataaac ttggcttcta 120 agttttgaaa aaaccatcaa tatgtgggat cctttattaa atgaatttcc agattcagtt 180 catggtctcc gttgtatgct tgcaataaaa tatttgcagc tagttgaaga aacctatgaa 240 cccaatactc tgggtcacga tctaattagg gatctcattt ccgtcattcg tgctcgtgac 300 tatgccgaag cgaaccggcg atatactaat ttcaacgccc gtctcgaagg ttcgtcgaaa 360 actgaacttc gacagcccgt ataccagccg tgctgctgcc cccactgtcc aaggcatcaa 420 gcgtcgatca tggacttaca ggcccatgta tcgaaagccg cggatgtaca gaatgtacag 480 aagccctgat gtcccctttg gttgtgaagg tccttgtaaa gtccagtcgt atgagcagcg 540 tgacgacgtc aagcataccg gtgttgttcg ttgtgttagt gatgtaacta ggggttctgg 600 tattacacat agagtaggta aacggttttg tattaagtca atctatattt tagggaagat 660 ttggatggat gaaaatataa aaaaacaaaa tcatactaac caggtcatgt tctttttagt 720 acgagaccga aggccgtatg gaactagtcc tatggatttt ggtcaagttt ttaacatgtt 780 tgataatgaa cctagtacgg ctactgtgaa gaacgattta agggataggt accaagtaat 840 gaggaagttc catgccacgg tggtaggtgg tccgtcaggg atgaaggagc agtgtctgtt 900 gaagaggttt tttaaagtta atacccatgt agtttataat catcaagagc aggcgaagta 960 tgaaaaccat actgagaatg cgttgttgtt gtatatggca tgtactcatg cttctaaccc 1020 agtgtatgct acgttgaaaa tacgtatcta tttttatgat gctgtaacaa attaataaag 1080 attgtatttt atttcatgtt gttcaattac atctattgtg ttctcaaata catcgaataa 1140 gacataatca actgctctaa taacattgtt taatgaaatt acacctatat tattcaaata 1200 cttatacact tgaaacctaa agattcttaa aaaatgacca gtcggagact gtaaggtcgt 1260 ccagatgcgg aagttgagaa aacatttgtg aatccccagt gccttcctca agttgtggtt 1320 gaacctgatt tgaaatgtta gtaaattgta tttgctgttg aatggttgtt ggttgtgtct 1380 ggttatcgtg aaatataggg gattgtttat ctcccagata aaaacgccat tctctgcttg 1440 aggagcagtg atgagttccc ctgtgcgtga atccatgatt gttgcagttg aggtggaggt 1500 agtatgagca gccacagtct aggtctacac gcttacgcct tattggtttc ttcttggcta 1560 tcttgtgttg gaccttgatt gatacttgcg aacagtggct cgtagagggt gacgaaggtt 1620 gcattcttga gagcccaatt tttcaaggat atgttttttt cttcgtctag atattcccta 1680 tatgaggagg taggtcctgg attgcagagg aagatagtgg gaattccccc tttaatttga 1740 atgggcttcc cgtactttgt gttgctttgc cagtccctct gggcccccat gaattccttg 1800 aagtgcttta aataatgcgg gtctacgtca tcaatgacgt tgtaccatgc atcattactg 1860 tacacctttg gacttaggtc tagatgtcca cataaataat tatgtgggcc tagagacctg 1920 gcccacattg ttttgcctgt tctgctatca ccctcaatga caatactatt aggtctccat 1980 ggccgcgcag cggaagacac gacgttctcg gacacccata cttcaagttc atctggaact 2040 tgattaaaag atgaagataa aaagggagaa atataaggag ccggaggctc ctgaaaaatt 2100 ctatctaaat tactatttaa attatgaaat tgtaaaatat aatctttcgg tattaattct 2160 ttaatgattc taagagcctc cgacttactg cctgagttaa gagctgcggc gtaagcgtca 2220 ttggctgact gctgaccccc acgtgcagat cgtccgtcga tctgaaactc accccagtcg 2280 acggtgtctc cgtccttatc gacataagac ttgacgtctg aactggattt agctccctga 2340 atgtttggat ggaaatgtgc tgccctgctt ggggatacca ggtcgaagaa tcgctgattt 2400 tggcacttga atttcccttc aaattggata agcacatgga gatgtggttc cccattctcg 2460 tggagttctc tgcaaacttt gatgtatttt ttatttgttg gggtttctag gtcttttaat 2520 tgggaaagtg cttcttcttt cgttaaggag cacttaggat atgtgaggaa ataatttttg 2580 caatttattt ggaagcgctt agggggagcc atatggtcaa tgagtaccga ttgaccaaga 2640 tttttacact tatccctggt gtatcggtac tcaatatata gtgagtacca aatggcattt 2700 tggtaatttt gtaaaagtac attgcaattc aaaattcaaa attcaaaaat caaatcatta 2760 aagcggtcat ccgtataata tt 2782 //