ID JN859134; SV 1; circular; genomic DNA; STD; VRL; 2776 BP. XX AC JN859134; XX DT 30-NOV-2012 (Rel. 115, Created) DT 30-NOV-2012 (Rel. 115, Last updated, Version 1) XX DE Tomato yellow leaf curl Sardinia virus isolate Portugal:Algarve 2:2001, DE complete genome. XX KW . XX OS Tomato yellow leaf curl Sardinia virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2776 RA Fiallo-Olive E., Trenado H.P., Louro D., Navas-Castillo J.; RT "First detection and diversity of recombinant species of the tomato yellow RT leaf curl virus complex in Portugal"; RL Unpublished. XX RN [2] RP 1-2776 RA Fiallo-Olive E., Trenado H.P., Louro D., Navas-Castillo J.; RT ; RL Submitted (14-OCT-2011) to the INSDC. RL Fruticultura Subtropical y Fitopatologia, Instituto de Hortofruticultura RL Subtropical y Mediterranea 'La Mayora', Estacion Experimental La Mayora, RL Algarrobo-Costa, Malaga 29750, Spain XX DR MD5; 96182f59a8b4731f7e17ac85e8fc2570. DR EuropePMC; PMC6362282; 30718735. XX FH Key Location/Qualifiers FH FT source 1..2776 FT /organism="Tomato yellow leaf curl Sardinia virus" FT /host="tomato" FT /isolate="Portugal:Algarve 2:2001" FT /mol_type="genomic DNA" FT /country="Portugal" FT /collection_date="Mar-2001" FT /db_xref="taxon:123735" FT gene 142..489 FT /gene="V2" FT CDS 142..489 FT /codon_start=1 FT /gene="V2" FT /product="precoat protein" FT /db_xref="GOA:Q776X7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q776X7" FT /protein_id="AFQ60602.1" FT /translation="MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDL FT ISVIRARDYAEANRRYTNFNARLEGSSKTELRQPVYQPCCCPHCPRHQASIMDLQAHVS FT KAADVQNVQKP" FT gene 302..1078 FT /gene="V1" FT CDS 302..1075 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:Q776X6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q776X6" FT /protein_id="AFQ60603.1" FT /translation="MPKRTGDILISTPVSKVRRKLNFDSPYTSRAAAPTVQGIKRRSWT FT YRPMYRKPRMYRMYRSPDVPFGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHR FT VGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDNE FT PSTATVKNDLRDRYQVMRKFHATVVGGPSGMKEQCLLKRFFKVNTHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1072..1476) FT /gene="C3" FT CDS complement(1072..1476) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancement protein" FT /db_xref="GOA:K7PRP9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K7PRP9" FT /protein_id="AFQ60604.1" FT /translation="MDLRTGEYITAHQATSGVYTFEITNPLYFTITRHNQQPFNSKYNL FT LTFQIRFNHNLRKALGIHKCFLNFRIWTTLQSPTGHFLRIFRFQVYKYLNNIGVISLNN FT VIRAVDYVLFDVFENTIDVIEQHEIKYNLY" FT gene complement(1217..1624) FT /gene="C2" FT CDS complement(1217..1624) FT /codon_start=1 FT /gene="C2" FT /product="transactivator protein" FT /db_xref="GOA:K7PRR2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K7PRR2" FT /protein_id="AFQ60605.1" FT /translation="MQSSSQSTSHCSQIPIKIQHHIAKKRQVRRRRVDLDCGCSYYIHL FT DCINHGFTHRGVHHCASSNEWRLYLRDNKSPIFHDNQTQPTTIQQQIQFTNISNQVQPQ FT LEEGTGDSQMFSQLPHLDDLTVSDWSFFKNL" FT gene complement(1533..2612) FT /gene="C1" FT CDS complement(1533..2612) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein" FT /db_xref="GOA:K7PRP7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K7PRP7" FT /protein_id="AFQ60606.1" FT /translation="MAQPKRFQINAKHYFLTFPKCSLSKEEALEQLLQLQTPTNKKYIK FT ICRELHEDGQPHLHMLIQFEGKFNCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDVLEWGTFQIDGRSARGGQQSANDAYAKAINARSKSEALDVIKELAPRDYILQFH FT NINSNLNMVFQVPPAPYVSPFLSSSFDQVPDELEHWVSENVVDAAARPWRPVSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSQKVYSNNAWYNVIDDVDPHYLKHFKEFMGSQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPQSSFKEYLDEEKNQTLKNWAIKNAIFVTIHQPL FT FTNTNQDPTPHRQKETSEA" FT gene complement(2165..2455) FT /gene="C4" FT CDS complement(2165..2455) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K7PRR0" FT /protein_id="AFQ60607.1" FT /translation="MGNLISTCSFSSRVNSTAKITDSSIWYPQPDQHISIRTFRELNQA FT QTSSPTSTRTEMFLNGVLSRSTDDLQGEDSSQQMTLTPRQLTHEVSRRLLM" XX SQ Sequence 2776 BP; 756 A; 506 C; 607 G; 907 T; 0 other; accggatggc cgcgctcccc ggtaaagtag tgggccctac gaactaattt gtgtcgacca 60 atgaaaatgc agcctcaaag cttaaataat gtatttactt tgttataaac ttggcttcta 120 agttttgaaa aaaccatcaa tatgtgggat cctttattaa atgaatttcc agattcagtt 180 catggtctcc gttgtatgct tgcaataaaa tatttgcagc tagttgaaga aacctatgaa 240 cccaatactc tgggccacga tctaattagg gatctcattt ccgtcattcg tgcccgtgac 300 tatgccgaag cgaaccggcg atatactaat ttcaacgccc gtctcgaagg ttcgtcgaaa 360 actgaacttc gacagcccgt ataccagccg tgctgctgcc cccactgtcc aaggcatcaa 420 gcgtcgatca tggacttaca ggcccatgta tcgaaagccg cggatgtaca gaatgtacag 480 aagccctgat gtcccctttg gttgtgaagg tccttgtaaa gtccagtcgt atgagcagcg 540 tgacgacgtc aagcataccg gtgttgttcg ttgtgttagt gatgtaacta ggggttctgg 600 tattacacat agagtaggta aacggttttg tattaagtca atctatattt tagggaagat 660 ttggatggat gaaaatataa aaaaacaaaa tcatactaac caggtcatgt tctttttagt 720 acgagaccga aggccgtatg gaactagtcc tatggatttt ggtcaagttt ttaacatgtt 780 tgataatgaa cctagtacgg ctactgtgaa gaacgattta agggataggt accaagtaat 840 gaggaagttc catgccacgg tggtaggtgg tccgtcaggg atgaaggagc agtgtctgtt 900 gaagaggttt tttaaagtta atacccatgt agtttataat catcaagagc aggcgaagta 960 tgaaaaccat actgagaatg cgttgttgtt gtatatggca tgtactcatg cttctaaccc 1020 agtgtatgct acgttgaaaa tacgtatcta tttttatgat gctgtaacaa attaataaag 1080 attgtatttt atttcatgtt gttcaattac atctattgtg ttctcaaata catcgaataa 1140 gacataatca actgctctaa taacattgtt taatgaaatt acacctatat tattcaaata 1200 cttatacact tgaaacctaa agattcttaa aaaatgacca gtcggagact gtaaggtcgt 1260 ccagatgcgg aagttgagaa aacatttgtg aatccccagt gccttcctca agttgtggtt 1320 gaacctgatt tgaaatgtta gtaaattgta tttgctgttg aatggttgtt ggttgtgtct 1380 ggttatcgtg aaatataggg gatttgttat ctcgaaggta taaacgccac tcgttgcttg 1440 atgcgcagtg atgtactccc ctgtgcgtaa atccatggtt tatgcagtct aaatgtatat 1500 agtatgaaca gccacagtcc agatctaccc ttctacgcct cacttgtctc tttttggcga 1560 tgtggtgttg gatcttgatt ggtatttgtg aacaatggct ggtggattgt gacgaagatt 1620 gcatttttta tggcccaatt ttttaatgtt tgattttttt cttcgtcgag gtattcttta 1680 aatgatgatt gtgggcctgg attgcagagg aagatagtgg gtatgcctcc tttaatttga 1740 atgggcttcc catactttgt gttgctttgc cagtcccttt gggaccccat gaattcttta 1800 aagtgtttta aataatgcgg gtctacgtca tcaatgacgt tgtaccaagc attattgcta 1860 tatacttttt gactgaggtc aagatgtccg cacaaataat tatgtgggcc tagggaacgg 1920 gcccacatag tttttcctgt ccgactgtca ccctcaatca ctatactcac cggcctccaa 1980 ggccgcgcag cggcatccac gacgttctcg gaaacccagt gttcaagttc atctggaact 2040 tgatcaaaag atgaagataa aaaaggagaa acatatggtg ccggaggcac ctgaaaaacc 2100 atatttaaat tactatttat attatgaaat tgtaaaatgt aatctctagg ggctaattct 2160 ttaattacat caagagcctc cgacttactt cgtgcgttaa ttgccttggc gtaagcgtca 2220 tttgctgact gctgtcctcc ccttgcagat cgtccgtcga tctggaaagt accccattca 2280 agaacatctc cgtccttgtc gatgtaggac ttgacgtctg agcttgattt agctccctga 2340 atgttcggat ggaaatgtgc tgatctggtt ggggatacca gatcgaagaa tctgttattt 2400 ttgcagttga atttaccctc gaactgaatg agcatgtgga gatgaggttg cccatcttcg 2460 tgtaattctc tgcaaatctt aatgtatttt ttatttgttg gtgtttgtag ttgaagtagt 2520 tgttctaggg cttcttcttt ggagagagaa cattttggga aagttagaaa ataatgtttt 2580 gcatttattt gaaaacgctt aggctgagcc atttggtcaa tgggtaccaa ttgacctcag 2640 attcatttta ttccatgtat tggtagattg gtactcaata tatagtgagt accaaatggc 2700 atgtatgtaa atatgttaag ttattttttt aatttatttt aatttttgga attttagcgg 2760 ccatccgttt aatatt 2776 //