ID JN831651; SV 1; linear; genomic DNA; STD; VRL; 5076 BP. XX AC JN831651; XX DT 11-JAN-2012 (Rel. 111, Created) DT 11-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Porcine bocavirus 5/JS677, complete genome. XX KW . XX OS Porcine bocavirus 5/JS677 OC Viruses; Parvoviridae; Parvovirinae; Bocaparvovirus; OC unclassified Bocaparvovirus. XX RN [1] RP 1-5076 RX PUBMED; 22205722. RA Li B., Ma J., Xiao S., Fang L., Zeng S., Wen L., Zhang X., Ni Y., Guo R., RA Yu Z., Zhou J., Mao A., Lv L., Wang X., He K.; RT "Complete Genome Sequence of a Novel Species of Porcine Bocavirus, PBoV5"; RL J. Virol. 86(2):1286-1287(2012). XX RN [2] RP 1-5076 RA Li B., Ma J., He K.; RT ; RL Submitted (08-OCT-2011) to the INSDC. RL Jiangsu Academy of Agricultural Sciences, Institute of Veterinary Medicine, RL 50 Zhong-ling Street, Nanjing, Jiangsu 210014, China XX DR MD5; 99ad5ab64e31d93e58078aafdf4de3d9. DR EuropePMC; PMC3255843; 22205722. DR EuropePMC; PMC3359876. DR EuropePMC; PMC3700315; 23616657. DR EuropePMC; PMC3818428; 24223918. DR EuropePMC; PMC3838256; 24109231. DR EuropePMC; PMC3907790; 23225112. DR EuropePMC; PMC3950361; 24701194. XX FH Key Location/Qualifiers FH FT source 1..5076 FT /organism="Porcine bocavirus 5/JS677" FT /host="pig" FT /isolate="5/JS677" FT /mol_type="genomic DNA" FT /country="China" FT /isolation_source="stool" FT /collection_date="May-2011" FT /note="genotype: 5" FT /db_xref="taxon:1131622" FT gene 199..2202 FT /gene="NS1" FT CDS 199..2202 FT /codon_start=1 FT /gene="NS1" FT /product="NS1" FT /db_xref="GOA:H2E7V2" FT /db_xref="InterPro:IPR001257" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:H2E7V2" FT /protein_id="AEX30511.1" FT /translation="MASAGVGLSDQEWINYWHGAITGFKSPCYTYVIHLDLQDWRPHER FT ALMDIYSKDVSVIIDDIVDTEKELLLSDVTYEWKASLAMKLQNHHGLGQTLCESADIAV FT RRLFQLKQQNHNPQYSCFTQAEIGPSKIHVHVVCGGDGLTRFNAKKCTWIIAKFFWNHM FT LELWEHFESCYRPTNAQMAIGVQLRMLCERIKSKQDTTVTILTYKDRHNEQHAQRVNGP FT SYITNYLLPKNRQLVTWLEMDVRTPSVAWFETEKTYMCSHIDRQPITHYLRKGLHDRLV FT MNSSEETGGPVHKMARWGELPQVGENSLARENTRPRPAKITKKQCVMIDTLQRCEDEHI FT CTKEELTMLRPDLVIMFESSPGGSRTLDEVLEMHRVRVTRSYTALGYILKQFPDNKFIK FT PENKVVRLLNIQGYNPIQVGHWVATVLSKKAGKQNTLCFYGPASTGKTNLAKAIANAVK FT VYGCVNHLNKNFVFNDCQSKLLAWWEECVMHNDWVEPAKCLMGGTTFRVDRKHKDSAEQ FT PQTPLIISTNHDIYTVVGGNTVTTVHEKPIRDRVVQFNFMKTLPQNFGEISVSDVADWL FT GWCAEDFDLSLDGFKKEWDIDVVPNSFPLAVYCDGHLQDFVLYAQGPCCRCGGYLPHTT FT TSDGDWTESADPGRTLRMRERETPRGWDGIIS" FT gene 2332..3006 FT /gene="NP1" FT CDS 2332..3006 FT /codon_start=1 FT /gene="NP1" FT /product="NP1" FT /db_xref="InterPro:IPR021075" FT /db_xref="UniProtKB/TrEMBL:H2E7V3" FT /protein_id="AEX30512.1" FT /translation="MSQRFSDIKSRSSNRFSPYSRIQARDPRVNERSTTGTEHGTSSSE FT RMETDPNQGSSSRSTKSFGRKQRGSSSQSSGSLVGNRWKSSKMAKKQNPATVFMEHKKR FT EGLDMDLCGFYYHSTRIAGKGTRWIFDVGKKEFQSVARQNCITWDQCRELLFTYKRCLD FT TMYRSMMYHFRFTECHKCDYWDDFYRQHLAGVTPPETVAPSSVGELSDVEMLEAVESMN FT ES" FT gene 2996..5050 FT /gene="VP1" FT CDS 2996..5050 FT /codon_start=1 FT /gene="VP1" FT /product="VP1" FT /db_xref="GOA:H2E7V4" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR013607" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/TrEMBL:H2E7V4" FT /protein_id="AEX30513.1" FT /translation="MSLKRGQFRGVLFPGYNYLGPFNPLENGDPVNKADEAAKKHDQAY FT NKYINKGLNPYLKFNKGDQDFIDSLQSDSSVGGNFARAVFHIKKQIAPALNEPKDTGEP FT PAKKDKRAGNKRHLYFARLNKGAKKAKADPNNMDGDMGDNEQGAGEAPAAEGGARAAGG FT ISGGGGGGPSGNHGVGISTGGWIGGSILGHNRIITKNTRQWVCTIKNDHKYKQYTQWTQ FT GNTNMGMQGFTTPWNMFNFNQYSSHFNPNEWQWLVNRAKRFRPVRMEIKIYNIQIKQES FT NQDVTAQYTNDLTAGLHVLCDGEHAFPWTQLPWDKGCMPELPHDIWTLQQYAYITCASE FT AQDTTSNGNELNIRGAVPMYLLEETDHAVIRTGESIAFHHTFDCGWVDNTRSSVMPQMA FT CINPLVDSRLVGVWLNQAGNGTNEDQMRPYQKHGPWWPGPGYRDNRNTSENGTNGHTVL FT GPYITAWKPEGLTYASSPVRYGAATGPYTGGQSTEVVTGNANNNANVTRFTPGDGPGGA FT NNNNYFIQRSSVQTGTRDQALYKATGTSTSEEARVGMMPNQMWDSAQISRYNPIWTKIP FT RVDRHTLLDTEDGTLPMTHPPGTIYVKLANIPTPNGTGHLNIYATGQVSCEIEWEYEEH FT FNKNWRPERRIDANKMRADVYKINADGGYDLPQNYYETMPTRWGQEKVL" FT gene 3404..5050 FT /gene="VP2" FT CDS 3404..5050 FT /codon_start=1 FT /gene="VP2" FT /product="VP2" FT /db_xref="GOA:H2E7V5" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/TrEMBL:H2E7V5" FT /protein_id="AEX30514.1" FT /translation="MDGDMGDNEQGAGEAPAAEGGARAAGGISGGGGGGPSGNHGVGIS FT TGGWIGGSILGHNRIITKNTRQWVCTIKNDHKYKQYTQWTQGNTNMGMQGFTTPWNMFN FT FNQYSSHFNPNEWQWLVNRAKRFRPVRMEIKIYNIQIKQESNQDVTAQYTNDLTAGLHV FT LCDGEHAFPWTQLPWDKGCMPELPHDIWTLQQYAYITCASEAQDTTSNGNELNIRGAVP FT MYLLEETDHAVIRTGESIAFHHTFDCGWVDNTRSSVMPQMACINPLVDSRLVGVWLNQA FT GNGTNEDQMRPYQKHGPWWPGPGYRDNRNTSENGTNGHTVLGPYITAWKPEGLTYASSP FT VRYGAATGPYTGGQSTEVVTGNANNNANVTRFTPGDGPGGANNNNYFIQRSSVQTGTRD FT QALYKATGTSTSEEARVGMMPNQMWDSAQISRYNPIWTKIPRVDRHTLLDTEDGTLPMT FT HPPGTIYVKLANIPTPNGTGHLNIYATGQVSCEIEWEYEEHFNKNWRPERRIDANKMRA FT DVYKINADGGYDLPQNYYETMPTRWGQEKVL" XX SQ Sequence 5076 BP; 1427 A; 1249 C; 1324 G; 1076 T; 0 other; ttttcgggca cagccaatga cagcgatggg gtgacatgac gtcaacgatc ctgattgggt 60 gggagggtct atataaagag gaaaccagga agaggagctc attcttcggc gggacatcga 120 ggtgttcaca tcgaggaagc tcctgagatc atcgctggcg aagacagctc cggcaagtac 180 tttcttatat ctgctggcat ggcttctgct ggagttgggc tgtctgatca ggagtggatt 240 aattactggc atggagctat tacaggcttt aagagcccat gctatacata tgtcattcat 300 ctggatcttc aggactggag acctcatgag agggctctca tggacattta ttcgaaggat 360 gtttctgtga tcatagatga catagtggat actgagaaag aattactgct cagcgatgtc 420 acttatgaat ggaaagccag tctggccatg aagctccaga atcatcacgg gctcggtcag 480 accttgtgtg agtctgctga catcgccgtt cgacggctct ttcaactgaa acagcagaat 540 cacaatcctc aatacagctg cttcacgcaa gctgagatag gaccatccaa gattcatgtt 600 catgtagtat gcgggggaga tggtctaact agattcaacg ccaaaaagtg cacttggatc 660 atagctaagt tcttctggaa tcatatgctc gagctctggg agcattttga gagctgctac 720 aggccaacga acgcgcagat ggccattggg gtacaactgc gcatgctctg tgagagaatc 780 aagtctaaac aagatacaac cgttactatt ctgacctata aagacagaca caacgagcaa 840 cacgctcagc gggtcaacgg tcctagctac atcaccaact atctcttacc gaagaataga 900 cagttggtga cctggttgga gatggatgtc cgcacaccga gcgtagcttg gtttgagaca 960 gagaagacct acatgtgcag tcacattgat aggcagccga tcactcacta tctcagaaag 1020 ggtctccatg accggctggt catgaacagt tctgaggaga caggagggcc tgtccataag 1080 atggcgcgct ggggagagct tcctcaggtg ggtgaaaact cgctagctag agagaacact 1140 cggcctaggc ctgccaagat caccaagaaa caatgtgtga tgatagatac actacagaga 1200 tgcgaggatg aacacatctg cactaaagag gaactaacta tgctacgtcc agatctggtg 1260 attatgtttg aaagctctcc aggcggctct cgaacgctag atgaggtgct cgagatgcat 1320 cgcgtgagag tcactcgctc ttacacagct ctaggctata ttctcaaaca gtttccagac 1380 aacaagttca ttaaaccgga gaataaggtg gtcaggcttt tgaacatcca aggctacaat 1440 ccaatccagg tcggccactg ggtggcgacc gtgctctcta aaaaggcagg aaaacagaac 1500 acactctgtt tctatggtcc agccagtaca gggaagacca atctagctaa agcgatcgcg 1560 aatgcggtga aggtgtatgg ttgtgtcaat cacctcaaca agaattttgt ctttaacgac 1620 tgccagagca aactcttagc ctggtgggaa gagtgtgtga tgcacaacga ttgggttgag 1680 ccggctaagt gtctgatggg agggacgacc ttcagagtag ataggaaaca caaggatagc 1740 gctgaacaac ctcagacacc tttgatcatc agcactaacc atgacatcta cacagtggtg 1800 ggtgggaaca cagtcactac cgttcatgaa aagccgattc gagatagagt ggtccagttc 1860 aatttcatga aaacgctgcc tcagaatttt ggagagatct ctgtctctga tgtggctgac 1920 tggctcggct ggtgcgccga ggactttgat ctctcgctcg acgggttcaa gaaggaatgg 1980 gacattgacg ttgttcccaa cagctttcct ctagcggtct actgtgatgg tcatttacag 2040 gattttgtgc tctacgctca aggaccttgt tgtcgctgtg gtggctactt gcctcatact 2100 actaccagcg acggtgattg gactgagtcc gctgatccag gtaggactct gcgcatgcgc 2160 gagagggaga cacctagagg gtgggatggg atcatctcat gactctgtct tctcttacag 2220 atcctgttcc tgtggtggtt tcttctccga agaaggtaac cgcgactcag ggaacacaga 2280 ccgatcctga gccttcgagt gagtacatcg actggagcag ttgtccaacc aatgagtcag 2340 agattctccg atatcaaatc tcgcagcagc aaccggttct ctccttactc gaggatccag 2400 gcgagggacc ctcgagtcaa cgagaggtct acaaccggga cggagcatgg aacgtcttcc 2460 tcggagcgga tggaaacgga tcccaaccag ggatcctcgt cgcggtcgac caagtccttc 2520 gggaggaagc agaggggatc atcgagccag agttctggct ctcttgtggg gaatcgttgg 2580 aagagcagca agatggctaa gaaacaaaat ccagcgacgg tgttcatgga acacaagaag 2640 agggagggac tcgacatgga cctctgtggg ttttactatc actccacaag aattgcagga 2700 aagggaacta gatggatttt tgatgtgggt aaaaaagaat tccaatctgt tgccagacaa 2760 aattgcatta cctgggatca atgtagggag ttacttttta cgtataaacg atgtctggac 2820 actatgtacc gatctatgat gtatcacttt agattcactg aatgtcataa atgtgattac 2880 tgggatgatt tctatagaca gcatttagcg ggtgtgactc ctcctgagac tgttgctcct 2940 tcttctgtag gtgaactatc agacgtggaa atgttagaag cagttgaatc aatgaatgag 3000 tcttaagcgc ggtcagttcc gcggtgttct gtttcctggt tataattatt tgggtccttt 3060 taatcctttg gaaaacggtg atcctgtcaa taaagccgac gaggccgcaa aaaaacacga 3120 tcaagcctat aataaatata tcaataaagg tttaaatccc tacctgaaat ttaataaagg 3180 tgatcaagac tttatcgact ctttgcagtc tgactcttct gtgggcggta actttgcgcg 3240 tgccgtcttt catataaaaa agcaaattgc gcctgcgctc aacgaaccta aagacacggg 3300 ggaacctccg gccaagaagg acaaacgcgc gggcaataaa cgtcacctgt actttgcgcg 3360 cttaaataaa ggcgcgaaaa aagccaaagc tgatcctaac aacatggatg gtgatatggg 3420 agataacgaa caaggggcgg gtgaagcgcc agctgctgaa ggcggagcaa gagctgctgg 3480 cggcattagc ggcggtggtg gaggaggccc gagtgggaac cacggcgtcg gcatctccac 3540 cggaggatgg atcgggggat ccatcttagg acataaccgc atcatcacaa aaaatacacg 3600 tcaatgggta tgcaccatca aaaatgacca caagtacaaa caatacacac aatggaccca 3660 gggaaacacc aacatgggca tgcaagggtt caccacaccg tggaacatgt tcaactttaa 3720 tcagtacagc agtcacttta atcccaacga atggcagtgg ctcgtcaacc gagccaagcg 3780 cttcagaccg gtgaggatgg aaatcaagat ctacaacatc caaatcaaac aagaaagcaa 3840 ccaagatgtc acggcgcaat ataccaacga tctcaccgcg ggtctgcacg tgctctgcga 3900 tggggaacac gcctttccct ggacgcagct gccctgggac aaaggctgca tgccagagct 3960 gccgcacgac atctggacgc tgcagcagta cgcctacatc acgtgcgcct ctgaggcaca 4020 ggacacgacg agcaacggaa acgagctcaa catacgagga gccgtgccca tgtatctcct 4080 agaggagacg gatcacgccg tcatccgcac gggcgagagc atcgccttcc atcacacctt 4140 cgactgcgga tgggtcgaca acacacgctc gagcgtcatg cctcagatgg cctgcatcaa 4200 tccgctcgtc gactccagac tcgtcggggt ctggctcaac caagccggaa acgggacgaa 4260 cgaagaccag atgagaccgt atcagaaaca cggtccgtgg tggccaggac ccggctacag 4320 agacaataga aacaccagcg aaaacggaac aaacggacat accgtcctgg gaccttacat 4380 cacagcctgg aagccagagg gactcaccta cgcctcgtcc cctgtcagat acggagcggc 4440 cacgggtccg tacacaggag gccaatcgac cgaggtcgtg acaggcaacg ccaacaacaa 4500 cgccaacgtt acgagattca cgccgggaga cggaccgggt ggagcaaaca acaataacta 4560 ctttatccag cgaagttccg tccagacggg aaccagagat caggctctct acaaagccac 4620 aggaacctca accagcgaag aagcaagagt aggcatgatg ccgaaccaga tgtgggactc 4680 ggcacaaatc tccaggtaca atcccatctg gaccaagata cccagggtgg acagacatac 4740 cttactcgac acagaggacg gaaccttacc aatgacacat cctccgggaa ccatctacgt 4800 caaactcgcc aacattccga ctccgaacgg gaccgggcat ctcaacatct acgccacggg 4860 acaggtctcc tgcgaaatcg agtgggagta cgaggaacac ttcaacaaga actggcgtcc 4920 cgaacgcagg atcgacgcaa acaagatgcg cgccgacgtc tacaaaatca acgccgacgg 4980 cggatacgac ctgcctcaga actattacga aaccatgcca acacgatggg ggcaggaaaa 5040 agtactgtaa cctttgctct ctgtatattc ttttcg 5076 //