ID JN831356; SV 1; linear; genomic RNA; STD; VRL; 7948 BP. XX AC JN831356; XX DT 28-FEB-2012 (Rel. 111, Created) DT 06-JUN-2012 (Rel. 113, Last updated, Version 3) XX DE Canine picornavirus strain 325F, complete genome. XX KW . XX OS Canine picornavirus OC Viruses; Riboviria; Picornavirales; Picornaviridae; Mischivirus; OC Mischivirus D. XX RN [1] RP 1-7948 RX DOI; 10.1128/JVI.07228-11. RX PUBMED; 22354943. RA Woo P.C., Lau S.K., Choi G.K., Yip C.C., Huang Y., Tsoi H.W., Yuen K.Y.; RT "Complete genome sequence of a novel picornavirus, canine picornavirus, RT discovered in dogs"; RL J. Virol. 86(6):3402-3403(2012). XX RN [2] RP 1-7948 RA Woo P.C.Y., Lau S.K.P., Choi G.K.Y., Yip C.C.Y., Huang Y., Tsoi H.-W., RA Yuen K.-Y.; RT ; RL Submitted (10-OCT-2011) to the INSDC. RL Department of Microbiology, The University of Hong Kong, State Key RL Laboratory of Emerging Infectious Diseases, University Pathology Building, RL Queen Mary Hospital 852, Hong Kong XX DR MD5; 32bc111110a5e2a6e3ff7cbbae9d0e37. DR EuropePMC; PMC3302304; 22354943. DR EuropePMC; PMC3359876. XX FH Key Location/Qualifiers FH FT source 1..7948 FT /organism="Canine picornavirus" FT /host="Canis familiaris" FT /strain="325F" FT /isolate="325" FT /mol_type="genomic RNA" FT /country="Hong Kong" FT /collection_date="2008" FT /db_xref="taxon:1196647" FT 5'UTR 1..668 FT CDS 669..7805 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:H6VLP2" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR002527" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR014838" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="InterPro:IPR036203" FT /db_xref="UniProtKB/TrEMBL:H6VLP2" FT /protein_id="AFB78146.1" FT /translation="MSELFLSKETTLFCRIRKIVLFWNGRLKVLRRIRIPVTSNDQTKR FT RINCGAAVSKGETGNKHQVAHAGGNITQINYYGSDYAQAHTAAQNNMDPGKFTKPLTDL FT ALATRGPTLKSPNVEECGYSDRIMQITSGNSTITTQEAVQAIVAYGEWPEYEVGIGEAL FT DKQSEPGPACDRFYTLDSWQWTNSSRGYGYDLPGCLTDIGIFGQNCTYHFLMRSGFCIH FT VQLNASKFHQGMMLVCAIPECQSSSGERSNSIFQLQERDFADYPLAQLTLFPHQLINLR FT TNNSATLILPYVNASPSENPLSHNFWTVFITPVVPLSYNTGATTSIPVTVSIAPMYTSF FT SGLRNSVPVVNREATSQGVPVFGVPGSNQFVTTIRNAGFPLLPDFEETPMHKIPGEVNN FT LLEVLQVDTFCTVSENANTFLNLDVTQQSDFGGRIAVWDMSLNSNFFASTYLARCTRFF FT SNYRGSVKLTLTFCGSAMATGKFLLAYTPPGGNAPTTRKEAMLATHIIWDVGLQSSVDF FT VVPWISQTAYRFAHTPGNVLSYRGYITMFYQTQVVVPPGAPSTCQITCMAAAAKDFVLR FT CPTDSAYFQGLGDDIGKIVNDTLSNAIQTLDIKPVQGKPMPDQLTVTSGDAAALTAPET FT GVTSETEPANVMETRGLATTFSGRETDISNFMSKYALFHKTALATKASGTATFVNIPLY FT FSDAANTQLAVRAKYRMFTYLRMGFDINMVLSIDPASRSRNNVPNLTDKVTVQILYSPP FT GCPKPNAYDSQEWYLPTTPSVFQEANTTPASVRLPFMGPASVYASFYNGYRNFNPETAG FT YGQFPGNYIGDISLRIVENFRSSDNTSDVIVNVLCYARPTNIRAFCPRPIVTQKSVSML FT SKSKGRVEFVETDEEECFQLVQEADGTERRVMCGRRAQRKRKLKQTINAPMWAQDVMHF FT LWLAWDMEDGNQFHIIPIDRYHAIMPSHLYSESLYFSRSIGHKYEYFYYEKVWEECLND FT IVCVKFDIPMFRDIPPFCNDCFPKNTWTICKNGLYHAAKWMGDLTYEDAIWVDGLEEYE FT ENTVMGPHWQQHVLRSGNNYINQGWCGSPVVCKNGICGYASVSDCATECFFVCFPMIRS FT YQKHCPVFQGPEEEGLLSDGLRLAEYERRCADWSMPMDLGIGYDQPEQGMKEFQGVKEW FT CQDIAAGAGLSFGTEAMNGIVKEAEKMMVNAALGQINWKTEMAKKIIAIIIKTICAIVL FT IAKSDDKTSTAIAVGTILGVDLLLEDPFEWLKIKVYKALGIPVAQNQGVSEWIKEFNAA FT CTAAKGLEWIGVKIQTFIQWVKDLFKREDPRRRKFLNQLEDLPILMEHIDKIMVARGKY FT PDDQIVKVCNSMRTLKRGADIYGVERNAATTQIVAYYKKAMSILQSMSNGRVEPVGLLI FT HGSPGSGKSLATEIIGRCLTEKHGGNRPYSLPPDPKHFDGYAQQPVVLMDDLGQNPDGE FT DCKLLCQMISSTEFVVPMAALEEKGMNFTSKFVLASTNAADLKPPTIMEPKALARRFFL FT DLHIEIQKEYNMNGKLDASSALNMCQHPSTNFKHCCPMICGKAVLFKDIRTGIKYTLDD FT IVSKLQREYQARSSCGSKLDAIFQGSDDEWFETDYDKAPHVLKTFDEMKESGIELPMPR FT EIADLLEAVNTPEVVSYCEQKGWIIPQKVKIERVRSDIKKWAAWITTGLSVLASIVSLG FT SFIYMIYKVFAKSEGPYNGFSQQPLKKPELRRVAKAQSPDMEFINKLFKQSLFEVKTEK FT GLFTGLGLYDTWILLPKHSRPDGDILLDGNKFEIKEVVEIENKQGSLELVVVNIDRPVK FT FRDIRKYLPDHFSKEKDCFLVMNTALFPKLWCPVGEVSSFGFLNLSHHATYNTCRYHYP FT TKSGQCGGVICKSGKIIAMHIGGDGKNGYGAILTKKIIGVLEQGEIVKMKKAPKPINVS FT CKTQLQPSVFHEVFDGDKEPAVLNPKDKRLEVNFEEALFSKYKGNKNFEVTKNMDVAVD FT HYYSQMVSAMPENLTEPLSLEDVVYGVEHLEGLDLATSAGFPYVVQGIKKKDLIPARGE FT SLSKLQDALALNGYDLPFVTYLKDELRPKEKVKQGKTRLIECASLNDTIRMKRIFGRLF FT QFFHANNGILTGSAVGCNPDIDWSRFYAEMGERPLCAFDYSNYDASMDPAWFECLKRLL FT RKFGYEEYQVRLIDQICNSKHYYKDKEYEVVGGMPSGCSGTSIFNSMLNNIIIRTLVLD FT AYKGINLDELKILAYGDDVIVTYPFPLDASILAEIGKQYGLTMTPPDKGSAFNEITWDN FT VTFLKRKFVSDSSFPFLIHPVFPMKEIHESARWTRSAATTEEHIRSLCHLAWHNGEGDY FT NEFLSQIRSVPVGRALNLPEYSVLYRQWLDSF" FT mat_peptide 669..815 FT /product="L" FT mat_peptide 816..1010 FT /product="VP4" FT mat_peptide 1011..1739 FT /product="VP2" FT mat_peptide 1740..2423 FT /product="VP3" FT mat_peptide 2424..3356 FT /product="VP1" FT mat_peptide 3357..4151 FT /product="2A" FT mat_peptide 4152..4484 FT /product="2B" FT mat_peptide 4485..5477 FT /product="2C" FT mat_peptide 5478..5801 FT /product="3A" FT mat_peptide 5802..5870 FT /product="3B" FT mat_peptide 5871..6419 FT /product="3C" FT mat_peptide 6420..7802 FT /product="3D" FT 3'UTR 7806..7948 XX SQ Sequence 7948 BP; 2321 A; 1451 C; 1781 G; 2395 T; 0 other; ttatttttca aaatgccact ggcattacac catattcgta tggtgtaatg tcagtggttg 60 gatgcccagt cctgagggac tgtgcatcca gtggttaaga gccacactct ttatttatca 120 actattgatc tttgtaacta agaaatgtac cagagttcta ttatggctcc aaacccattg 180 gggtctagaa caagcacttc tgttaccccg gtcattattg gctgttagga tgtacccacg 240 tctgaaggcc aagaagatcg ttacccggct gttgtctacg ggaagactag taacttttgt 300 tgaaaggtaa tctcattgat ccgggtggca accccagtca cccagaaact agtgatgagt 360 gtccacattc ctcctatggt aacatagggt ggtcgctgcg ctggcactag ggccttaagg 420 catgagagaa ccaagacaca actgtgaaga tccgactgtg cacttcagta ttcctccggc 480 ccctgaatgc ggctaatcct aacccacttg cacacgctcg caacccagtg agtggtgtgt 540 cgtaatgcgc aagaagtgga cggaaccgac tactttgggt gtccgtgttt ctttttttat 600 ttaccaagtc tcttatggtc acaagcatta gaaacaagat gcctgtgatc actcgcgaga 660 cctccaacat gtccgagctt ttcctctcca aggaaacaac attgttctgt agaattagga 720 agattgtctt gttttggaat ggccgcttga aagttttaag gcgcatcaga attcctgtga 780 cttcaaatga tcaaaccaaa aggcgcatca attgtggtgc tgcagtgtct aaaggtgaaa 840 caggcaacaa gcatcaagtg gctcatgctg gaggaaatat aactcagata aattattatg 900 gctcagatta tgcccaggct catactgctg ctcaaaataa tatggatcca ggtaagttta 960 ccaaacctct tactgatttg gccttagcaa cacgtggtcc aactctcaaa agtcccaacg 1020 tggaggagtg tggttattct gataggatca tgcagataac atctggaaat tcaacaataa 1080 ctacccagga agcagtgcaa gctattgtgg cttatggaga atggcctgaa tatgaagttg 1140 gtatagggga agctttggat aaacaatcag aaccaggtcc agcatgtgac agattttaca 1200 ctttagattc atggcaatgg acaaattctt cacgtggtta tggatatgat cttcctggct 1260 gcctcactga cattggtatc tttggtcaaa actgcaccta tcatttcttg atgcgttcgg 1320 gtttctgcat acatgtacag ttaaatgcct ccaagttcca tcagggtatg atgcttgtgt 1380 gtgccattcc tgaatgtcaa tcctcctctg gcgagagatc aaattcaatt ttccagttgc 1440 aggaaaggga ttttgcggat tacccattgg cacagttgac tttgtttcct catcagttaa 1500 taaatctaag gacaaataat tctgctactc ttattttgcc ctatgtcaat gcaagtccat 1560 ctgaaaatcc cttgtctcac aatttctgga ctgtgttcat tacaccggtg gtaccattga 1620 gttataacac aggtgcaaca actagcatac ctgttacagt tagcattgca cccatgtata 1680 catcattttc tggtctgaga aattctgtcc ctgtagtgaa tagagaagca acaagccagg 1740 gtgtccccgt gtttggagtt ccaggatcta atcagtttgt tacaacaatc agaaatgctg 1800 gtttccccct tctaccagat tttgaggaga cacccatgca taagatcccc ggtgaagtca 1860 ataatctgct ggaagtgttg caagtggata ctttttgtac tgtctctgag aatgccaata 1920 ctttcttgaa tttggatgtg actcagcaat ctgattttgg gggaaggata gcagtgtggg 1980 atatgagttt gaattccaat ttctttgctt caacttattt agctaggtgt actagattct 2040 tttccaatta tagaggtagt gttaaattga ctctaacgtt ctgtggttct gccatggcca 2100 ctgggaagtt tcttctcgca tataccccac ctggtggtaa tgccccaaca accagaaagg 2160 aagcaatgct tgccacccat attatatggg atgttggtct tcagtcctct gttgattttg 2220 tagttccttg gatatctcaa acagcatata gatttgccca cacccctgga aatgttttgt 2280 catatagagg ttatattacc atgttttatc aaacacaggt tgttgttccc cccggagcac 2340 cgtcaacatg ccagataaca tgcatggctg ccgcagccaa agattttgtt ttaaggtgcc 2400 ccacagatag tgcttatttc caaggtttgg gtgatgacat aggcaaaatt gtgaatgata 2460 cactgtcaaa tgcaatccaa acattggata tcaaaccagt acaagggaaa cccatgcctg 2520 atcagttaac tgttacatct ggtgatgctg ctgcattgac tgcccctgag actggagtga 2580 catcagagac agaacctgct aatgtgatgg agacaagagg acttgcaaca accttttcag 2640 gtagagagac tgatatctcc aatttcatgt caaaatatgc cctttttcac aagacagcat 2700 tggctactaa agcttcagga acagcaacat ttgtgaatat tccactgtat ttttctgatg 2760 cagcaaatac tcaattggcc gtacgtgcaa agtataggat gtttacatat ttaaggatgg 2820 gatttgacat aaatatggtt ttgagcattg acccagcatc taggtctaga aataatgtgc 2880 caaatttgac agataaggtt acagttcaga tcctgtattc cccacctggt tgccctaaac 2940 ctaatgccta tgattcacaa gagtggtatt taccaacaac cccatctgtt ttccaggagg 3000 caaatacaac acctgcctct gtccgtcttc ccttcatggg tccagcatct gtttatgcct 3060 cattttataa tggttataga aattttaacc cagaaacagc tgggtatggt cagtttccag 3120 gtaattatat tggagatatc tcccttagaa ttgtagagaa ttttagaagt agtgataata 3180 catctgatgt gatagtgaat gttttatgtt atgcaaggcc cactaatatt agagcatttt 3240 gtcccagacc aatcgttacc caaaagtcag tgtcaatgct ttctaaatca aaaggtagag 3300 ttgagtttgt agaaactgat gaggaagagt gcttccaact tgtgcaagag gctgatggaa 3360 ctgaaaggag ggtgatgtgt ggaagaagag cccaaaggaa aagaaagctt aagcaaacta 3420 ttaatgcacc aatgtgggct caggatgtca tgcacttctt gtggcttgca tgggatatgg 3480 aagatggaaa tcaatttcat ataatcccca tagataggta tcatgctata atgccttccc 3540 atctttattc tgaatctctt tatttttcca gatccatagg tcataagtat gagtatttct 3600 attatgagaa ggtgtgggag gaatgtctga atgatattgt atgtgtcaag tttgatattc 3660 ccatgtttag agatattccc cctttttgta atgattgttt tccaaagaat acttggacca 3720 tctgtaagaa tgggttatat catgcagcta agtggatggg tgatcttacc tatgaggatg 3780 ccatctgggt tgatggcctt gaggagtatg aggaaaatac tgttatggga ccccattggc 3840 aacagcatgt tttgagatcc ggaaataact acatcaacca aggttggtgt ggatcacccg 3900 ttgtgtgcaa gaatggtatc tgtggatatg catctgtgtc tgattgtgct actgagtgtt 3960 tctttgtgtg tttccccatg attagatctt atcaaaagca ttgtccagtt tttcagggac 4020 cggaggaaga agggttgcta tctgatggtc tcagacttgc tgagtatgaa aggaggtgtg 4080 ctgattggtc aatgccaatg gatcttggta taggttatga tcagcctgaa caggggatga 4140 aagaattcca aggtgtcaaa gagtggtgcc aggatatcgc tgctggtgca gggttaagct 4200 ttggaacaga agctatgaat ggcattgtaa aggaggcaga gaaaatgatg gttaatgctg 4260 cacttggaca aatcaattgg aagactgaaa tggctaagaa gatcattgcc attatcatta 4320 aaacaatttg tgccattgta ctcattgcca agtcagatga caaaacatcc actgccattg 4380 ctgttggtac catcttaggt gttgatttac tcttggaaga tccttttgag tggttaaaaa 4440 ttaaagtgta taaggcattg ggcattcctg tcgcccaaaa tcaaggtgtt tctgaatgga 4500 tcaaggagtt caatgctgct tgcacggcgg caaagggtct ggagtggatt ggagttaaaa 4560 tccagacctt cattcaatgg gtgaaagatt tgttcaagag agaggatcca aggaggagaa 4620 agtttctaaa tcaattagag gatttaccca tactgatgga gcatattgat aaaatcatgg 4680 ttgccagagg aaaatatcct gatgatcaga ttgtcaaggt ttgcaattca atgaggacac 4740 ttaagagagg agctgacatc tatggtgttg agagaaatgc tgcaaccacc caaattgtgg 4800 cctattataa gaaagcaatg agcatcctcc agtcaatgtc aaatggtaga gtggaacctg 4860 ttgggctgct tattcatggt agtcctggct ctggaaaatc acttgcaact gaaattattg 4920 gaagatgttt gactgaaaag catggaggaa acagaccata ctcactacct ccagatccaa 4980 agcattttga tggatatgct caacaaccag ttgttttgat ggatgatttg ggacagaacc 5040 ctgatggtga agattgtaag cttctttgtc aaatgatatc cagcactgaa tttgttgttc 5100 ccatggctgc tttagaagaa aaaggaatga attttacatc aaaatttgta cttgcatcaa 5160 caaatgcagc agatctaaag cccccaacta ttatggaacc taaagcattg gcaagaagat 5220 ttttcttgga tctgcatatt gagatacaga aagagtacaa catgaatgga aagttggatg 5280 cctcttcagc cctaaatatg tgccaacatc catcaacaaa ttttaaacat tgttgcccaa 5340 tgatctgtgg aaaagcagta ctctttaagg atatcagaac tggaattaaa tatacattgg 5400 atgatatagt gagtaagctt caaagagagt accaagccag atcttcatgt ggtagtaaac 5460 ttgatgccat ctttcaaggt agtgatgatg agtggtttga aacagattat gataaagcac 5520 cacatgtttt gaagacattc gatgagatga aagaatctgg aatcgagtta cccatgccca 5580 gagaaatcgc agatttgctt gaagctgtga atacacctga ggttgtttcc tattgtgagc 5640 aaaaaggttg gatcatccca cagaaggtaa agattgagag agtcagatca gatattaaga 5700 agtgggcagc ttggataaca actggccttt cagtgctggc tagcattgta agcctgggta 5760 gcttcatcta tatgatctac aaggtgtttg ctaaaagtga aggcccatac aatggattta 5820 gtcaacaacc tctcaagaaa ccagaactta gaagggttgc caaggcacag tctccagaca 5880 tggaattcat caataaattg ttcaagcaat ccctctttga agtaaagact gagaagggcc 5940 tgtttacagg tttgggactc tatgatactt ggatccttct accaaaacat tctagacctg 6000 atggagatat tcttttagat ggtaataagt ttgaaataaa agaagtagtt gagatagaaa 6060 ataagcaggg ttctttagaa ttagttgtag ttaatataga tagacctgtt aagtttagag 6120 atattaggaa gtatttacct gatcattttt ctaaagagaa agattgtttc cttgttatga 6180 atactgctct tttccctaag ttgtggtgcc ctgtaggtga agtttcctct ttcggttttc 6240 ttaatctgtc tcatcatgcc acctacaata cctgtaggta ccattatcca accaagagtg 6300 gtcagtgtgg tggagtaatt tgtaagtctg gaaagatcat tgctatgcat attggaggag 6360 atgggaagaa tggatatggt gctatcctaa ccaagaaaat aattggagtt cttgagcaag 6420 gtgagattgt gaagatgaag aaggcaccaa aacccataaa tgtctcttgc aaaacccaat 6480 tacaaccatc tgttttccat gaagtctttg atggagataa ggaaccagca gtgttgaatc 6540 caaaagataa gagacttgag gtgaattttg aggaagcctt gttttccaaa tataaaggca 6600 ataaaaattt tgaagtgacc aagaatatgg atgtggctgt tgatcattat tactcccaaa 6660 tggtcagtgc catgcctgaa aatttgactg agcccttgtc acttgaggat gttgtttatg 6720 gagttgaaca tcttgaaggc ctggatcttg cgacatctgc tggatttccg tatgttgttc 6780 aaggtataaa gaagaaagac ttgattcctg ctagaggtga atccctctct aagttgcaag 6840 atgctctggc attaaatggt tatgaccttc catttgtcac atatctcaag gatgaattga 6900 gacccaaaga aaaagtcaag caaggcaaaa caagattgat tgagtgtgca tccctgaatg 6960 acaccatcag gatgaaaaga atatttggtc gtttgtttca atttttccat gctaataatg 7020 gtatcctaac tggttcagcc gttggatgca atcctgatat tgattggtct aggttctatg 7080 cagagatggg tgaaagacca ttgtgtgctt ttgattattc taattatgat gcatccatgg 7140 atccagcctg gtttgagtgt ttgaaaaggc tccttagaaa atttggttat gaagagtatc 7200 aagtcagatt gatagatcaa atttgtaatt ctaaacatta ttataaggat aaggagtatg 7260 aagttgttgg aggaatgcca tccggatgca gtggaacctc aattttcaat tccatgttga 7320 ataatatcat aatcagaact cttgttttgg atgcgtataa aggaattaat ttagatgagt 7380 taaagatttt ggcatatgga gatgatgtta ttgtcacata ccccttccca ttggatgctt 7440 ccattttggc tgaaatagga aaacagtatg gattgaccat gacccctccg gataagggtt 7500 ctgcattcaa tgaaataact tgggataatg tcacattttt aaagaggaag tttgtttctg 7560 attctagctt tccttttctt attcatcccg tttttcccat gaaggaaatt catgagtctg 7620 ctcgctggac tcgttcggca gcaactactg aagagcatat tcgctccctg tgtcatctgg 7680 catggcacaa tggagagggt gattataacg aatttctttc tcagattaga tctgtccctg 7740 taggtagagc tttgaatctc cctgagtatt ctgttcttta tagacagtgg ttagatagtt 7800 tttagtctta agtggtagag ttaagttgtc cgaggccacg ccgagtagga tcgagggtac 7860 agacttagtt ttagcatttt cttaatcatt aaaacaatca ttagaatcag tagtggttaa 7920 gattttaaat tttttgtttg attgttgc 7948 //