ID   JN817517; SV 1; linear; genomic DNA; STD; VRL; 2745 BP.
XX
AC   JN817517;
XX
DT   29-JAN-2012 (Rel. 111, Created)
DT   08-MAY-2018 (Rel. 136, Last updated, Version 2)
XX
DE   Papaya leaf curl virus, complete sequence.
XX
KW   .
XX
OS   Papaya leaf curl virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2745
RA   Pramesh D., Mandal B.;
RT   ;
RL   Submitted (05-OCT-2011) to the INSDC.
RL   Plant Pathology, Indian Agricultural Research Institute, Pusa Campus, New
RL   Delhi, Delhi 110012, India
XX
DR   MD5; 2ba41bb974abfcaef83ba71ce9e8f212.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2745
FT                   /organism="Papaya leaf curl virus"
FT                   /host="Croton bonplandianus"
FT                   /isolate="CYVMV-WB-Cr"
FT                   /mol_type="genomic DNA"
FT                   /country="India"
FT                   /isolation_source="plant showing yellow vein mosaic
FT                   symptoms"
FT                   /collection_date="10-May-2008"
FT                   /db_xref="taxon:53260"
FT   CDS             145..501
FT                   /codon_start=1
FT                   /product="pre-coat protein"
FT                   /note="AV2"
FT                   /db_xref="GOA:D8L222"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:D8L222"
FT                   /protein_id="AEY78470.1"
FT                   /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYAPDTLGHDLIRDL
FT                   ISVIRARNYVEASSRYNHFHARFEGTPSSQLRQPICEPCCCPHCPRHQSKGMGEQTHVP
FT                   EAQDVQDVQKPRCP"
FT   CDS             complement(296..613)
FT                   /codon_start=1
FT                   /product="AC5b"
FT                   /db_xref="InterPro:IPR013671"
FT                   /db_xref="UniProtKB/TrEMBL:H2E7E4"
FT                   /protein_id="AEY78474.1"
FT                   /translation="MGQAHSPRDIRQTYNLTHVTNIILSIKRLHFTWAFTSLRDIWASV
FT                   HPVHPGLPVHGSVRPCLCFGDADNGGSSTVHIWAVEVETTAYLRSGRGNDYICWTLRHN
FT                   F"
FT   CDS             305..1069
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="AV1"
FT                   /db_xref="GOA:H2E7E5"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:H2E7E5"
FT                   /protein_id="AEY78469.1"
FT                   /translation="MSKRPADIIISTPASKVRRRLNFDSPYVNRAAAPIVRVTKAKAWA
FT                   NRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGMGLTHR
FT                   VGKRFCVKSLYFVGKIWMDENIKTKNHTNTVMFWIVRDRRPSGTPNDFQQVFNVYDNEP
FT                   SKNDQRDRYQVLRRFQATVTGWSICCLGTSYNWEILSCYQLCGVYSPGSWEVCKSHLEC
FT                   FVVVYGMYSCLSPCVCYFESSELLLRFCNKLN"
FT   CDS             complement(1066..1470)
FT                   /codon_start=1
FT                   /product="replication enhancer protein"
FT                   /note="AC3"
FT                   /db_xref="GOA:H2E7E6"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:H2E7E6"
FT                   /protein_id="AEY78473.1"
FT                   /translation="MDSRTGEPITAAQAQNGVFIWEIQNPLYFKITEHHNRPFLMKEDI
FT                   ITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLNNLGVISINT
FT                   VIKSVDHVLWNVLHHVVYVDQSYSIKFNLY"
FT   CDS             complement(1211..1615)
FT                   /codon_start=1
FT                   /product="transcription activator protein"
FT                   /note="AC2"
FT                   /db_xref="GOA:H2E7E7"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:H2E7E7"
FT                   /protein_id="AEY78472.1"
FT                   /translation="MRPSSPSKAHSTQVPIKVQHKIAKKGIRRRRVDLPCGCSYFLSIN
FT                   CHNHGFTHRGTHHCSSSTEWRVYLGDSKSPVFQDNRTPQQAIPNEGRHHHRTDTVQSQP
FT                   EESFGDTQMFPSLPNLDDLTASDWSFLKGI"
FT   CDS             complement(1518..2603)
FT                   /codon_start=1
FT                   /product="replication initiation protein"
FT                   /note="AC1"
FT                   /db_xref="GOA:H2E7E8"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:H2E7E8"
FT                   /protein_id="AEY78471.1"
FT                   /translation="MPRINSFCVNAKNIFLTYPKCPIPKEQMLEILKNISCPSNRLFIR
FT                   VAQEKHQDGSMHIHALIQFKGKSQFRNPRHFDVTHPNNSTQFQPNFQGAKSSSDVKSYI
FT                   EKDGDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSTDAALAIIREKLPKDFIFQYH
FT                   NLKCNLDRIFTPPMEVYVSPFSSSSLDQVPEELEEWAAENVVSAAARPIRPISIVIEGD
FT                   SRTGKSVWARSLGPHNNLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT                   QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNAALKNWALKNATFITLEGPL
FT                   YSGSNQSAAQDSQEGDQASTS"
XX
SQ   Sequence 2745 BP; 753 A; 548 C; 633 G; 811 T; 0 other;
     accggatggc cgcgaaaaaa aaaagtgggc cccatggcgc actaactgac aaatacatct        60
     ccaccatgaa aagagctcct ccagagctta aattgtttgt ggtcccctta tttaaactcg       120
     ccaccaagta gtggattgcg cattatgtgg gatccattag taaacgagtt cccagaaacc       180
     gttcacgggt ttagatgtat gttagcagtt aaatatctgc agttagtaga gaagacttat       240
     gctcctgaca cattgggtca cgatttaatt agggatttaa tttcagtaat tagggctaga       300
     aattatgtcg aagcgtccag cagatataat catttccacg cccgcttcga aggtacgccg       360
     tcgtctcaac ttcgacagcc catatgtgaa ccgtgctgct gcccccattg tccgcgtcac       420
     caaagcaaag gcatgggcga acagacccat gtaccggaag cccaggatgt acaggatgta       480
     cagaagccca gatgtcccta agggatgtga aggcccatgt aaagtgcaat cttttgatgc       540
     taagaatgat attggtcaca tgggtaaggt tatatgtttg tctgatgtca cgaggggaat       600
     gggcctgacc catcgagtag ggaaacgttt ctgcgtgaag tcattgtatt ttgttggcaa       660
     aatatggatg gacgagaaca tcaagactaa gaaccatact aatactgtta tgttttggat       720
     cgttagagat aggcgtcctt caggaacccc aaatgatttc cagcaagtgt tcaatgttta       780
     tgataatgag ccctctaaga acgaccagcg tgatcgttat caggtgttga ggaggtttca       840
     agcaacagtc acagggtggt caatatgctg cttaggaaca agctataatt gggaaattct       900
     atcgtgttac caattatgtg gtgtatattc accaggaagc tgggaagtat gcaaatcaca       960
     cttagaatgc tttgttgttg tatatggcat gtactcatgc ctctcaccct gtgtatgcta      1020
     ctttgaaagt tcggagttac ttctacgatt ctgtaacaaa ttaaattaat aaagattgaa      1080
     ttttattgaa tatgattggt ctacatatac aacgtgatgt aatacattcc ataatacatg      1140
     atcaaccgat ttaattacag tgttaatact gataactcct aagttattta aatacttaag      1200
     aacttgggtc ttaaataccc ttaagaaacg accagtcgga ggctgtgagg tcatccagat      1260
     tcggaaggct aggaaacatt tgtgtatccc caaagctttc ctcaggttgt gattgaactg      1320
     tatctgtacg gtgatgatgt cttccttcat taggaatggc ctgttgtggt gttctgttat      1380
     cttgaaatac aggggatttt gaatctccca gataaacacg ccattctgtg cttgagctgc      1440
     agtgatgggt tcccctgtgc gtgaatccat ggttgtggca gtttatggaa aggaagtatg      1500
     aacacccaca cggtagatca actcgtcgac gcctgatccc cttcttggct atcttgtgct      1560
     gcactttgat tggaacctga gtagagtggg ccttcgaggg tgatgaaggt cgcattcttt      1620
     aaagcccagt tcttgagtgc agcattcttc tcttcatcca agaactcttt atagctcgag      1680
     ttgggtcctg gattgcagag gaagatagtg ggaattcctc ctttaatttg aactggcttc      1740
     ccgtactttg tatttgattg ccagtccctt tgggccccca tgaattcttt aaagtgcttt      1800
     aggtagtggg gatctacgtc atcaattacg ttgtaccagg catcattatt gtagacctta      1860
     ggactaaggt ctaagtgacc acacaggtta ttatgtggac ccaaagacct agcccacacg      1920
     ctcttccctg ttctactgtc accctcgatc actatactta tgggccttat aggccgcgca      1980
     gcggcactga cgacgttctc ggcagcccac tcctcaagtt cttctggaac ttgatccaaa      2040
     gaagaagaag aaaaaggaga aacataaacc tccattggag gtgtaaaaat cctatctaaa      2100
     ttacatttta aattatgata ttgaaaaata aaatctttag ggagtttttc cctaattatt      2160
     gctaaagctg cgtcagttga acctgcattt aaggcctctg ctgctgcatc attagctgtc      2220
     tgttgacctc ctcgagcaga tcttccatcg atctgaaact gaccccagtc gatgtaatca      2280
     ccgtccttct cgatgtagga cttgacatcg gaactggact tagctccctg gaagtttggt      2340
     tggaattggg tggagttatt agggtgagtg acatcgaaat gtctggggtt tctgaactgg      2400
     gatttacctt tgaattggat gagggcgtgg atatgcatag acccatcttg gtgtttctct      2460
     tgggctactc tgataaataa tctattagac ggacaggaaa tgtttttaag gatttcgagc      2520
     atttgctctt tgggtattgg gcatttggga taagtaagga agatattttt ggcattaaca      2580
     caaaaagagt taatacgagg catattgaat tggggacact caaaactctg aggaatgggg      2640
     gactcggggg actcatttat atggtgtccc taaatggcat ttctgtaatt tggtaaagta      2700
     attcaaaatt ctcacgctcc aaaaagcggc catccgtata atatt                      2745
//