Dbfetch
ID JN809822; SV 1; circular; genomic DNA; STD; VRL; 2762 BP. XX AC JN809822; XX DT 16-JAN-2012 (Rel. 111, Created) DT 16-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Sauropus leaf curl virus isolate SP6e segment A, complete sequence. XX KW . XX OS Sauropus leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2762 RA Shih S.L., Tsai W.S., Lee L.M., Kenyon L.; RT "First report and molecular characterization of begomoviruses infecting RT Sauropus androgynus in Thailand"; RL Unpublished. XX RN [2] RP 1-2762 RA Shih S.L., Tsai W.S., Lee L.M., Kenyon L.; RT ; RL Submitted (03-OCT-2011) to the INSDC. RL Virology, AVRDC-The World Vegetable Center, PO Box 42, Shanhua, Republic of RL China XX DR MD5; 77013a7c47b425acff7d46f465f4cc5f. XX FH Key Location/Qualifiers FH FT source 1..2762 FT /organism="Sauropus leaf curl virus" FT /segment="A" FT /host="Sauropus androgynus" FT /isolate="SP6e" FT /mol_type="genomic DNA" FT /country="Thailand:Kamphaengsaen" FT /collection_date="2010" FT /db_xref="taxon:1130981" FT gene 201..497 FT /gene="V2" FT CDS 201..497 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:H2E6U4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2E6U4" FT /protein_id="AEX37967.1" FT /translation="MLAVKYLQLVEETYSPDTLGHDLIRDLISVIRARNYVEATRRYSH FT FNSRLEGTTSSELRQPRDEPCCCPHCPRHQQKKDMDQQAHVSQAQILQSVQKP" FT gene 307..1080 FT /gene="V1" FT CDS 307..1080 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:H2E6U5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H2E6U5" FT /protein_id="AEX37964.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPVMSRAAAPTVLVTNKKRIW FT TNRPMYRKPRFYRVYKSPDVPRGCEGPCKVQSFEKKHDVGHTGTLLCVSDVTRGNGLTH FT RVGKRFCIKSIYILGKLWMDENIKTKNHTNTVMFWLVRDRRPMTTPYGFGEAFNMYDNE FT PSTATIKNDLRDRLQVLHRFQATLTGGQYACKEQVMVKRFWKINNHVVYNHQEKAAYEN FT HNENALILYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1077..1481) FT /gene="C3" FT CDS complement(1077..1481) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancement protein" FT /db_xref="GOA:H2E6W4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2E6W4" FT /protein_id="AEX37966.1" FT /translation="MDFRTGEYITATQAESGVYTWTVRNPLYFKITKHLERPFLTDHDV FT ITIQVQFNYNLRKALGMHQCFLICQIWTRLRPQTGRFLRVFNVQCMKYLDTLGVISINN FT VIRAIDHVLYDVLEGTIDAQLTHIIKYNLY" FT gene complement(1222..1629) FT /gene="C2" FT CDS complement(1222..1629) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional activation protein" FT /db_xref="GOA:H2E6X7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2E6X7" FT /protein_id="AEX37965.1" FT /translation="MQNSSSSQSNCTQVPIKVQHRIAKKKTIRRRRVDLPCGCSYFFPI FT TCANHGFSHRGVHHCNSGREWRLYLDGQKSPLFQDYQAPGEAIPDGPRRNNNPGPIQLQ FT PEESTGDAPMFPDLPDLDSFTSSDWAFLKSI" FT gene complement(1529..2617) FT /gene="C1" FT CDS complement(1529..2617) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:H2E6T0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2E6T0" FT /protein_id="AEX37963.1" FT /translation="MPRAGRFSIKAKNYFLTYPQCSLTKEEALSQIQNLKTPTNKKYIK FT ICRELHEDGSPHLHVLIQFEGKYNCSNNRFFDLVSPTRAAHFHPNIQGAKSSSDVKSYL FT DKDGDTLDWGEFQIDARSARGGCQNANDACAEALNAGSKEAALNIIREKLPKDYIFQFH FT NLNANLDRIFSPPVEVFVSPFLASSFDQVPEELECWAEENVRDAAARPWRPVSIVIEGE FT SRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSALKSWALKNAKFIFLSEQL FT YSGTHQSPAQNSQEEDDPQEES" FT gene complement(2203..2460) FT /gene="C4" FT CDS complement(2203..2460) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H2E6U9" FT /protein_id="AEX37968.1" FT /translation="MGALISTCSSNSKGNTTARITDSSTWCLQPGQHISIQTFRELNPA FT PTSSPIWTRTETPSTGENSRSTLEVLEGAARMLTTHAQKP" XX SQ Sequence 2762 BP; 718 A; 610 C; 634 G; 800 T; 0 other; accggatggc cgcgcaaatt tttgtcccct ttcgctttag tggttcccac gcactatctt 60 tggtcggcca atgagaatgc gcgctcaaag cttagatatc cgtgtggtcc cgccataaat 120 aacttcccct cgaaggtaaa ttcaaaatgt gagatccatt agtaaacgag tttcccgaaa 180 ccgttcacgg ctttaggtgt atgttagcag tcaaatacct gcagttagta gaggagacgt 240 attcgcctga cacattaggg cacgatctta tacgagattt aatatcagta attcgtgctc 300 gcaattatgt cgaagcgacc cgccgatata gtcatttcaa ctcccgcctc gaaggtacga 360 cgtcgtctga acttcgacag ccccgtgatg agccgtgctg ctgcccccac tgtcctcgtc 420 accaacaaaa aaaggatatg gaccaacagg cccatgtatc gcaagcccag attctacaga 480 gtgtacaaaa gccctgatgt gccccgtggt tgtgagggtc cctgtaaggt ccagtcgttc 540 gagaagaagc atgatgtggg tcatactggt acattattat gtgtgtcgga tgttactcgt 600 ggaaatgggc ttacccatcg tgttggtaag aggttttgta ttaagtctat ttacattctg 660 ggtaagttat ggatggatga gaacatcaag acgaagaatc acacgaacac agtcatgttc 720 tggttagtta gggataggcg tcctatgaca acgccctatg ggttcggcga ggcattcaac 780 atgtacgaca atgagcccag tacagccact atcaagaacg atcttcgtga tcgtctgcag 840 gtgctgcata ggtttcaagc cacgctcacg ggaggtcagt acgcgtgcaa ggaacaggtc 900 atggtgaaga ggttctggaa gatcaacaat cacgtcgtct acaaccatca ggagaaggct 960 gcttacgaga atcacaatga gaacgcatta atattgtata tggcatgtac tcatgcctct 1020 aaccccgtgt atgctacact gaagatccgc atctacttct atgattcagt gcagaattaa 1080 taaagattat attttattat atgtgtcaat tgagcatcaa ttgtgccctc cagtacatcg 1140 tacagtacat gatcaatagc cctaattaca ttgttaatgc taataactcc taatgtatct 1200 aaatacttca tacattgaac attaaatact cttaagaaac gcccagtctg aggacgtaaa 1260 cgagtccaga tctggcagat caggaaacat tggtgcatcc ccagtgcttt cctcaggttg 1320 tagttgaatt ggacctggat tgttattacg tcgtggtccg tcaggaatgg cctctccagg 1380 tgcttggtaa tcttgaaata gaggggattt ctgaccgtcc aggtatagac gccactctct 1440 gcctgagttg cagtgatgta ctccccggtg cgaaaatcca tggtttgcac aggtaattgg 1500 gaagaagtat gagcacccgc aaggtagatc aactctcctc ctgcggatcg tcttcttctt 1560 ggctattctg tgctggactt tgatgggtac ctgagtacag ttgctctgag aggaagatga 1620 attttgcatt cttcagtgcc cacgatttca gagctgaatt cttatcctca tccagatatt 1680 ccttatatga tgatgttgga ccaggattgc ataggaagat tgtcggaatg ccccctttaa 1740 tttgaattgg cttcccgtac ttggtattgc tttgccaatc cctctgggcc cccatgaatt 1800 ctttaaagtg tttcagatag tgggggtcaa catcatcgat gacgttatac catgcgtcat 1860 tagagtagat cttggggctc aagtctagat gcccacaaag gtaattatgt gggcctagtg 1920 atctggccca cattgttttc ccagttctac tctctccctc tatcactata ctcaccggtc 1980 tccaaggccg cgcagcggca tccctgacat tctcctccgc ccaacattca agttcttccg 2040 gaacttgatc gaatgaagaa gctaaaaaag gagaaacaaa aacctctacg ggaggtgaaa 2100 aaattctatc taaattagca tttaaattat gaaattgaaa aatataatct tttgggagtt 2160 tttcccttat tatatttaat gctgcttctt tagaacctgc atttaaggct tctgcgcatg 2220 cgtcgttagc attctggcag ccccctctag cacttctagc gtcgatctgg aattctcccc 2280 agtcgagggt gtctccgtcc ttgtccagat aggacttgac gtcggagctg gatttagctc 2340 cctgaatgtt tggatggaaa tgtgctgccc tggttggaga caccaggtcg aagaatctgt 2400 tattcgagca gttgtatttc ccttcgaatt ggatgagcac gtggagatga gggctcccat 2460 cttcgtgtaa ctctctgcag attttgatat attttttatt tgttggggtt tttaggtttt 2520 ggatttggga aagtgcttct tcctttgtga gtgagcactg aggatatgta agaaaataat 2580 tttttgcttt aatagaaaaa cgtccggctc taggcatttt ggaattgggg ggcactctaa 2640 gtctctgcaa tcgggggaaa tggggggcaa tttatatgtg ccccccaaat ggcattctcg 2700 taattcccaa aagaaagtca aattcaaatt caaattctaa aagcggccat ccgtataata 2760 tt 2762 //