ID JN809814; SV 1; circular; genomic DNA; STD; VRL; 2739 BP. XX AC JN809814; XX DT 16-JAN-2012 (Rel. 111, Created) DT 16-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus isolate AFSP2c segment A, complete DE sequence. XX KW . XX OS Tomato leaf curl New Delhi virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2739 RA Shih S.L., Tsai W.S., Lee L.M., Kenyon L.; RT "First report and molecular characterization of begomoviruses infecting RT Sauropus androgynus in Thailand"; RL Unpublished. XX RN [2] RP 1-2739 RA Shih S.L., Tsai W.S., Lee L.M., Kenyon L.; RT ; RL Submitted (03-OCT-2011) to the INSDC. RL Virology, AVRDC-The World Vegetable Center, PO Box 42, Shanhua, Republic of RL China XX DR MD5; d2ac6b6308ef452524cde76e72556610. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Tomato leaf curl New Delhi virus" FT /segment="A" FT /host="Sauropus androgynus" FT /isolate="AFSP2c" FT /mol_type="genomic DNA" FT /country="Thailand:Kamphaengsaen" FT /collection_date="2010" FT /db_xref="taxon:223347" FT gene 120..458 FT /gene="V2" FT CDS 120..458 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:H2E6P6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2E6P6" FT /protein_id="AEX37920.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKSYSLDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIEGTPTTQLRQPLWNSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT gene 280..1050 FT /gene="V1" FT CDS 280..1050 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:H2E6P7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H2E6P7" FT /protein_id="AEX37916.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGTRAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYILGKIWMDENIKTKNHTNSVMFFLVRDRRPTGTPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1047..1457) FT /gene="C3" FT CDS complement(1047..1457) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancement protein" FT /db_xref="GOA:H2E6P8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2E6P8" FT /protein_id="AEX37918.1" FT /translation="MITDSRTGEYITADRAESGVYTWEIQNPLYFKILKHDSRPFLTQH FT DIIKIQIQFNHNLRKALGIHKCFLTFQIWTGLRPPIGIFLRVFKTQVLKYLDSLGVIGI FT YNVIRAVYHVLDNVLEQTIDVWTSYDIKLDIY" FT gene complement(1177..1596) FT /gene="C2" FT CDS complement(1177..1596) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional activation protein" FT /db_xref="GOA:H2E6P9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2E6P9" FT /protein_id="AEX37917.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKGIRRRRVDLHCGCTYYISIN FT CHDHGFTHRGVHHCGSSREWRIYLGNSKSPVFQNFETRQQTIPNTARHNQDSNTVQPQP FT AESPGNSQVFSNFPNLDGLTPSDWDFLASLQNPGP" FT gene complement(1499..2674) FT /gene="C1" FT CDS complement(1499..2674) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:H2E6Q0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2E6Q0" FT /protein_id="AEX37915.1" FT /translation="MPFSVLPIYGTPDANYIEKVKGRRIKTTSFMAPPRRFRIDAKNYF FT LTYPKCSLTKEETLSQLQTLETPTAKKFIKICRELHEDGSPHLHVLIQFEGKFQCKNNR FT FFDLVSPSRSAHFHPNIQGAKSASDVKAYIDKDGDILEWGVFQIDGRSARGGQQTANDA FT YAKAINTGNKEDALKVIKELAPKDYVLQFHNLASNLDRIFQPPSEVYASPFSISSFDRV FT PPELVNWVSSNVVCAAARPFRPISIVIEGDSRTGKTMWARCLGPHNYLCGHLDLSPKVY FT SNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVMIKGGIPTIFLCNKGPNSS FT YKEYLDEEKNAALKQWAIKNAVFITLEEPLYSGRENIAPTEEEEGHSQEAS" FT gene complement(2251..2427) FT /gene="C4" FT CDS complement(2251..2427) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D2N283" FT /protein_id="AEX37919.1" FT /translation="MGLRISMFSSNSKGNSSARITDSSTWFPQVGQHISIRTFRELNQR FT QMSKHTSTKTETF" XX SQ Sequence 2739 BP; 737 A; 597 C; 616 G; 789 T; 0 other; accgaatggc cgcgcaaatt cttaggtggg ccctcgacga atgaaattga cggtacattg 60 cttctttagt gcggggggac caataaatag acttgctcac caagtttgga tccacaaaca 120 tgtgggatcc attattgcac gaattccctg aaagcgttca tggtctaagg tgcatgctag 180 ctgtaaaata tctgcaagag atagagaagt cctattcctt agacacagtc ggctacgatc 240 ttgtccgaga tctcatcctt gttcttcgag cgaagaacta tggcgaagcg accagcagat 300 atcatcattt caacgcccgc atcgaaggta cgccgacgac tcaacttcga cagcccctat 360 ggaactcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt cccaaggggc 480 tgtgaaggcc cttgtaaggt gcagtctttt gaatctaggc acgacgtatc gcatattggc 540 aaggtcatgt gtgtcagtga cgttacacga ggaactggac tcacacatcg cgtagggaag 600 cgattctgtg tgaaatctgt ctatattctg ggcaagatat ggatggatga aaacatcaag 660 actaaaaacc atactaacag tgtcatgttt tttttggttc gtgaccgtcg tcctacagga 720 acaccccaag atttcgggga agtcttcaac atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga ccgttatcaa gtcttacgga agtggcatgc gactgtgacg 840 ggaggaactt acgcatctag ggagcaagca ttagttagga agtttgttag ggttaataat 900 tatgttgttt ataatcaaca agaggccggc aagtatgaga atcatactga aaacgcatta 960 atgttgtata tggcctgtac tcacgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctatttct atgattcggt aacaaattaa taaatatcga gctttatatc atatgaagtc 1080 catacatcaa tcgtttgttc cagtacatta tccaatacat gataaactgc ccttattaca 1140 ttataaattc ctatgacacc caagctatcc agatacttaa ggacctgggt tttgaagact 1200 cgcaagaaaa tcccaatcgg agggcgtaag cccgtccaga tttggaaagt tagaaaacac 1260 ttgtgaattc ccagggcttt ccgcaggttg tggttgaact gtatttgaat cttgattatg 1320 tcgtgctgtg ttaggaatgg tctgctgtcg tgtttcaaaa ttttgaaata caggggattt 1380 tgaatttccc aggtatatac gccactctct gctcgatccg cagtgatgta ctcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcga tatataatac gtgcacccac aatgcagatc 1500 aactcgcctc ctgcgaatgc ccttcttctt cttctgtggg agcgatgttt tcgcgaccgg 1560 aatagagtgg ttcttcgagt gtgatgaaga ctgcattctt gattgcccac tgtttcagtg 1620 ctgcattttt ttcttcgtcc agatattcct tatagctgct atttggacct ttattgcaca 1680 ggaagatagt gggaattcct cctttaatca tgacaggctt tccgtacttc gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaagtgctt tagatagtgc ggatcaacgt 1800 catcaatgac gttgtaccac gcatcattgc tatacacctt tgggctcaga tcgagatgtc 1860 cacacaagta attgtgtggg cctaagcacc gagcccacat tgttttgccc gttctactat 1920 ccccctctat tactatgctt atgggcctaa aaggccgcgc agcggcacac acaacatttg 1980 acgacaccca attgacgagt tcaggaggaa ctctgtcgaa ggatgaaatt gaaaatggag 2040 atgcatatac ctcagaagga ggttgaaaaa tacgatctaa attgctagct aaattatgaa 2100 actgcagaac ataatctttt ggggctaatt cctttatcac ttttaatgca tcttctttat 2160 ttcccgtgtt aatcgcctta gcatatgcat cgttggccgt ctgctgacca ccacgagcag 2220 atcgtccatc gatctggaaa acaccccatt ctagaatgtc tccgtctttg tcgatgtatg 2280 ctttgacatc tgacgctgat ttagctccct gaatgttcgg atggaaatgt gctgaccgac 2340 ttggggaaac caagtcgaag aatctgttat tcttgcactg gaatttccct tcgaattgga 2400 tgagaacatg gagatgcgga gacccatcct cgtgaagctc ccgacagatt ttgatgaatt 2460 tcttcgcagt cggggtttct agggtttgta attgggaaag tgtctcttct ttagttagag 2520 aacactttgg atatgtgagg aagtagtttt tggcatctat tctgaaacga cgtggcggag 2580 ccataaaact tgtcgttttg attcggcgtc ccttaacctt ctctatgtaa ttggcgtctg 2640 gcgtcccata tataggtagg acgctaaatg gcataattgt aattttggaa agaaaattac 2700 tttaattcaa aatcctcata gcggccattc gttaatatt 2739 //