Dbfetch

Dbfetch

ID   JN807767; SV 1; linear; genomic DNA; STD; VRL; 1216 BP.
XX
AC   JN807767;
XX
DT   13-FEB-2012 (Rel. 111, Created)
DT   13-FEB-2012 (Rel. 111, Last updated, Version 1)
XX
DE   Jatropha mosaic India virus-[Jatropha] isolate Gujarat1 coat protein (AV1)
DE   gene, partial cds; replication enhancer protein (AC3) and transcriptional
DE   activator protein (AC2) genes, complete cds; and replication-associated
DE   protein (AC1) gene, partial cds.
XX
KW   .
XX
OS   Jatropha mosaic India virus-[Jatropha]
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1216
RA   Raj S.K., Srivastava A., Snehi S.K.;
RT   "Molecular characterization of a begomovirus causing mosaic disease on
RT   Jatropha curcas L. in India";
RL   Unpublished.
XX
RN   [2]
RP   1-1216
RA   Raj S.K., Srivastava A., Snehi S.K.;
RT   ;
RL   Submitted (28-SEP-2011) to the INSDC.
RL   Plant Molecular Virology, CSIR-National Botanical Research Institute, Rana
RL   Pratap Marg, Lucknow, U. P. 226001, India
XX
DR   MD5; 9e5ee75937dbe4313a6d28d1fb2417cf.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1216
FT                   /organism="Jatropha mosaic India virus-[Jatropha]"
FT                   /host="Jatropha curcas L."
FT                   /strain="AS-JC-7"
FT                   /isolate="Gujarat1"
FT                   /mol_type="genomic DNA"
FT                   /country="India"
FT                   /collected_by="Ashish Srivastava"
FT                   /collection_date="15-Sep-2011"
FT                   /db_xref="taxon:1143701"
FT   gene            <1..378
FT                   /gene="AV1"
FT   CDS             <1..378
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:H6V7V3"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:H6V7V3"
FT                   /protein_id="AFA26443.1"
FT                   /translation="TYTVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMYRDRY
FT                   QVLRKWSSTVTGGQYASKEQAIVRRFFRVNNYVVYNQQEAGKYENHTENALMLYMACTH
FT                   ASNPVYATLKIRIYFYDSVSN"
FT   gene            complement(375..779)
FT                   /gene="AC3"
FT   CDS             complement(375..779)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:H6V7V4"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:H6V7V4"
FT                   /protein_id="AFA26444.1"
FT                   /translation="MDSRTGELITAAQAMNGVYTWEVPNPLYFKIIDHSSRPFLMEHDI
FT                   ITVQIRFNHNLRKALGLHQCWMDFKIWTTLRPQTLRFLRVFRYQVLRYLDMLGVICINT
FT                   VVRAVEHVLYSVLTGTDSLEQSNLIKFKIY"
FT   gene            complement(520..927)
FT                   /gene="AC2"
FT   CDS             complement(520..927)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional activator protein"
FT                   /db_xref="GOA:H6V7V5"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:H6V7V5"
FT                   /protein_id="AFA26445.1"
FT                   /translation="MRPSSPSTGHSTQVPIKVQHRAAKRRAIRRRRXDLNCGCSYYVHI
FT                   NCHNHGFTHRGTHHCSSGDEWRLYLGGSKSPLFQDHRPQQPAVPDGTRHNNRPDTVQPQ
FT                   PEESVGTTSMLDGFQNLDDLTASDLAFLEGF"
FT   gene            complement(857..>1216)
FT                   /gene="AC1"
FT   CDS             complement(857..>1216)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication-associated protein"
FT                   /db_xref="GOA:H6V7V6"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="UniProtKB/TrEMBL:H6V7V6"
FT                   /protein_id="AFA26446.1"
FT                   /translation="GDRLTSFCGHLDLSPRVYRNDAWYNVIDDVDPHYLKHFKEFMGAQ
FT                   RDWQSNTKYGKPVQIKGGIPTIILCNPGPISSYKEYLDEPKNTALKAXAIRNAXFISXD
FT                   GSLYSSADQGSTQGS"
XX
SQ   Sequence 1216 BP; 290 A; 280 C; 300 G; 342 T; 4 other;
     acgtacactg tgatgttctt cctcgtcagg gatcgtaggc ccgtggacaa accccaggat        60
     tttggtgagg tgttcaacat gttcgataac gagcccagta ctgctacggt taaaaacatg       120
     taccgtgatc ggtaccaggt gttaaggaag tggagttcca ctgtcactgg tggtcagtat       180
     gcgagcaaag agcaggcaat agttaggcgt ttttttaggg ttaataatta tgttgtgtat       240
     aatcagcaag aggctggtaa gtacgaaaac catacggaga atgcattgat gctgtacatg       300
     gcgtgtactc acgcctctaa ccccgtgtat gctacgctta agatacggat ctacttctac       360
     gattcagtat ccaattaata aattttaaat tttattaaat ttgactgctc caaactgtca       420
     gtccctgtga gtacactgta caatacatgc tctacggctc taacgaccgt atttatacat       480
     atgaccccta acatgtccag gtatctgagt acctggtacc taaaaaccct caagaaacgc       540
     aaggtctgag gccgtaaggt cgtccagatt ttgaaatcca tccagcattg atgtagtccc       600
     aacgctttcc tcaggttgtg gttgaaccgt atctggacgg ttattatgtc gtgttccatc       660
     aggaacggcc ggctgctgtg gtctatgatc ttgaaataga ggggatttgg aacctcccag       720
     gtatagacgc cattcatcgc ctgagctgca gtgatgagtt cccctgtgcg tgaatccatg       780
     gttgtggcag ttgatgtgca cgtagtacga gcacccgcag ttgaggtcta stctccgtcg       840
     ccggatggcc ctacgcttag ctgccctgtg ttgaaccttg atcggcactt gagtagagtg       900
     acccgtcgas ggagatgaag gwcgcatttc ttattgccya ggccttcaat gccgtattct       960
     tcggctcgtc aaggtactct ttatagctgg aaattggccc aggattgcac aggatgatag      1020
     tgggtatccc acctttaatt tgaaccggct ttccgtattt ggtgttgctt tgccagtccc      1080
     tctgggcccc catgaattcc ttgaagtgct ttaggtagtg gggatctacg tcatcaatga      1140
     cgttgtacca cgcgtcgttt ctgtagaccc taggactcaa gtccagatgg ccacagaagg      1200
     aagtcagtct atcccc                                                      1216
//