ID JN807765; SV 2; linear; genomic DNA; STD; VRL; 2746 BP. XX AC JN807765; XX DT 13-FEB-2012 (Rel. 111, Created) DT 10-APR-2013 (Rel. 116, Last updated, Version 2) XX DE Papaya leaf curl virus-[soybean: Lucknow] segment DNA-A, complete sequence. XX KW . XX OS Papaya leaf curl virus-[soybean: Lucknow] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2746 RA Raj S.K., Srivastava A., Snehi S.K., Kumar S.; RT "Papaya leaf curl virus associated with yellow mosaic disease on Soybean in RT India"; RL Unpublished. XX RN [2] RP 1-2746 RA Raj S.K., Srivastava A., Snehi S.K., Kumar S.; RT ; RL Submitted (28-SEP-2011) to the INSDC. RL Plant Molecular Virology, CSIR-National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U. P. 226001, India XX RN [3] RC Sequence update by submitter RP 1-2746 RA Raj S.K., Srivastava A., Snehi S.K., Kumar S.; RT ; RL Submitted (04-APR-2013) to the INSDC. RL Plant Molecular Virology, CSIR-National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U. P. 226001, India XX DR MD5; aa0f35689a5b66492a4b09a12e4ae832. XX CC On Apr 8, 2013 this sequence version replaced gi:374922592. XX FH Key Location/Qualifiers FH FT source 1..2746 FT /organism="Papaya leaf curl virus-[soybean: Lucknow]" FT /segment="DNA-A" FT /host="Glycine max (soybean)" FT /isolate="soybean" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="Ashish Srivastava" FT /collection_date="16-Sep-2011" FT /db_xref="taxon:1143698" FT gene 150..506 FT /gene="AV2" FT CDS 150..506 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:M9R0I0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:M9R0I0" FT /protein_id="AGI65155.1" FT /translation="MWDPLLNDFPESLHGFRCMLAIKYLQQVQENYSPDTLGYDLFRDL FT ISVIRARNYVEATSRYIHFHARFEGTPPSQLRQPVCEPCCCPHCPRHQSKSMDQPPHVE FT ETSVLPTVYVPRCP" FT gene 310..1080 FT /gene="AV1" FT CDS 310..1080 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="involved in encapsidation of virion" FT /db_xref="GOA:H6V7U8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H6V7U8" FT /protein_id="AFA26438.2" FT /translation="MSKRPADIFISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWT FT NRPMWRKPRFYRLYMSPDVPRGCEGPCKVQSFEQRHDIAHTGKVICISDVTRGNGITHR FT IGKRFCIKSVYITGKVWMDENIKSKNHTNSVMFFFVRDRRPVDKPQDFGEVFNMFDNEP FT STATVENVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLEIRIYFYDSETN" FT gene complement(1077..1481) FT /gene="AC3" FT CDS complement(1077..1481) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="increases viral replication" FT /db_xref="GOA:H6V7U9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H6V7U9" FT /protein_id="AFA26439.2" FT /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFTMKEDI FT IKVQIQFNYNLRKALGMHKCFLVYRIWMTSQPQTGRFLRVFKTQVLKYLDNLGVISINN FT VIRSVDHVLWDVLQHIVYVEQSYSIKFNIF" FT gene complement(1222..1626) FT /gene="AC2" FT CDS complement(1222..1626) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /note="transcriptional activator for virus sense genes" FT /db_xref="GOA:H6V7V0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H6V7V0" FT /protein_id="AFA26440.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGNRRRRVDLPCGCSYFIALA FT CHNHGFTHRGTHHCSSSREWRVYLGDSKSPIFQDNRTPQPSIHNERRHNQSPNTVQLQP FT EESVGDAQVFSSLPNLDDFTASDWSFLKGL" FT gene complement(1529..2614) FT /gene="AC1" FT CDS complement(1529..2614) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /note="involved in virus replication" FT /db_xref="GOA:H6V7V1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H6V7V1" FT /protein_id="AFA26441.2" FT /translation="MPRLNSFCVNAKNIFLTYPKCPIPKEQMLEILQSINCPSDKLFIR FT VAQEKHQDGSLHIHALIQFKGKSKFRNTRHFDVTHPNNSTQFNPNFQGAKSSSDVKSYI FT EEDSDYIDWGQFQIDGRYGRGGQQTANDAAAEALNAGSADAALAINREKLPKDFILQFH FT NLNCNLSRIFTEPTQAYESPFLSSSFNQVPEELEEWAVENVMGAAARTLRPMSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNIIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNAALKNWALKNATFITLEGPL FT YSGSNQSAAQASQEGEQTSSC" FT gene complement(2200..2457) FT /gene="AC4" FT CDS complement(2200..2457) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M9QXX9" FT /protein_id="AGI65156.1" FT /translation="MGLCISMPSSSSKVNPSSETPDISMSLTLITPPNSTQTSRELSPA FT LMSSPTSRRTVITSTGVSFRSMEDMVEEVNRQLMMQQQRP" XX SQ Sequence 2746 BP; 759 A; 546 C; 597 G; 844 T; 0 other; taatattacc ggatggccgc gatttcttta gtgggccctt aacgcattaa ctgacaagga 60 catgcgaacc aatcatatga cacgctcaaa gcctaattgt tttttggtcc cttatttaaa 120 cttcgtcccc aagtattttc ttttgcacaa tgtgggatcc attgttgaac gactttcccg 180 aatcactgca tggattccgg tgcatgttgg caataaagta tttgcagcaa gttcaagaga 240 attattctcc tgacacatta ggttacgatt tatttaggga tttaatttca gttattaggg 300 ctagaaatta tgtcgaagcg accagcagat atattcattt ccacgcccgc ttcgaaggta 360 cgccgccgtc tcaacttcga cagcccgtat gtgagccgtg ctgctgcccc cattgtccgc 420 gtcaccaaag caaaagcatg gaccaaccgc cccatgtgga ggaaacctcg gttttaccga 480 ctgtatatgt ccccagatgt ccctagaggt tgtgagggac catgtaaagt tcaatcattt 540 gagcaaaggc atgatattgc ccacacaggc aaagttattt gcatatctga cgttactaga 600 ggtaatggaa ttacacatcg tattggcaaa cgattttgca tcaagtccgt gtacattact 660 ggtaaggttt ggatggacga aaatattaag tccaaaaatc acactaacag tgttatgttt 720 tttttcgtta gggatcgtag gcctgtggat aaaccacagg attttggaga ggtatttaac 780 atgtttgata atgagcccag tacggctact gtggagaatg ttcatcgtga taggtatcaa 840 gttcttcgga aatggcatgc aactgttact ggtggacaat atgcgtcaaa ggaacaagcc 900 ctcgtcaaga agtttgttag ggttaataat tatgttgtat ataaccagca agaggctggc 960 aagtatgaga atcattctga gaatgcgtta atgttgtata tggcatgtac tcatgcctct 1020 aacccagtgt atgctacttt ggagatacgg atctatttct atgattccga aacaaattaa 1080 aaaatattaa attttattga atatgattgt tctacatata caatgtgttg taatacatcc 1140 cataaaacat gatcaactga tctgattaca ttattaatac tgataactcc taaattatct 1200 aaatatttta aaacttgagt cttaaagacc cttaagaaac gaccagtctg aggctgtgaa 1260 gtcatccaga ttcggtagac tagaaaacac ttgtgcatcc ccaacgcttt cctcaggttg 1320 tagttgaact gtatttggac tttgattatg tcttctttca ttgtgaatgg acggttgtgg 1380 tgttctgtta tcttgaaata taggggattt tgaatctccc agataaacac gccattctct 1440 gcttgagctg cagtgatgag ttcccctgtg cgtgaatcca tgattgtgac aggctagtgc 1500 tatgaaatat gaacatccac aggggagatc aacacgacga cgtctgttcc ccttcttggc 1560 tagcctgtgc tgcactttga ttggaacctg agtagagtgg gccttcgagg gtgatgaagg 1620 tcgcattttt taaagcccaa ttcttgagtg cagcattctt ctcttcatcc aagaactctt 1680 tataactgga attgggtcct ggattgcaga ggaagatagt gggaattccg cctttaattt 1740 gaactggctt tccgtacttt gtatttgatt gccagtccct ttgggccccc atgaattctt 1800 taaagtgctt taggtagtgg ggatcgacgt catcaatgat gttgtaccag gcatcattat 1860 tgtagacctt tgggctaagg tctagatgtc cacacaaata attatgtgga cccaaagacc 1920 tagcccacat cgtctttcct gttctactat caccctctat gacaatactc atgggtctca 1980 aagtccgcgc agcggcaccc attacattct caacagccca ttcttcaagt tcttcaggaa 2040 cttgattaaa agaagaagat aaaaaaggcg actcataagc ctgtgtaggc tctgtgaata 2100 tccgagacaa attacaattt aaattatgaa attgtaaaat aaaatccttt gggagttttt 2160 ccctatttat tgctaaagct gcgtcagctg aacctgcatt tagggcctct gctgctgcat 2220 cattagctgt ctgttgacct cctcgaccat atcttccatc gatctgaaac tgaccccagt 2280 cgatgtaatc actgtcctcc tcgatgtagg acttgacatc agagctggac ttagctccct 2340 ggaagtttgg gttgaattgg gtggagttat tagggtgagt gacatcgaaa tgtctggtgt 2400 ttctgaactt ggatttacct ttgaactgga tgagggcatg gatatgcaga gacccatctt 2460 ggtgtttttc ttgtgccact ctgataaata atttatcaga tgggcaattt attgactgaa 2520 gaatctcgag catttgctct ttgggtattg ggcattttgg ataagtgagg aagatatttt 2580 tggcattaac acaaaaagag ttaagacgag gcatattgaa ttggggacac tcaaaactct 2640 gaggaatggg ggactctggg gacgcattta tatggtgtcc ccaaatggct ttttcgtaat 2700 tttgaaagaa aattcaaaat tcaaaatccc aaagcggcca tccgta 2746 //