ID JN807764; SV 2; circular; genomic DNA; STD; VRL; 2764 BP. XX AC JN807764; XX DT 13-FEB-2012 (Rel. 111, Created) DT 26-FEB-2013 (Rel. 115, Last updated, Version 2) XX DE Pedilanthus leaf curl virus-[Crape Jasmine], complete genome. XX KW . XX OS Pedilanthus leaf curl virus-[Crape Jasmine] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2764 RA Raj S.K., Srivastava A., Kumar S., Snehi S.K.; RT "Molecular identification of a variant of Pedilanthus leaf curl virus RT associated with leaf curl and mosaic disease on crape jasmine RT (Tabernaemontana coronaria) and in India"; RL Unpublished. XX RN [2] RP 1-2764 RA Raj S.K., Srivastava A., Snehi S.K.; RT ; RL Submitted (28-SEP-2011) to the INSDC. RL Plant Molecular Virology, CSIR-National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U. P. 226001, India XX RN [3] RC Sequence update by submitter RP 1-2764 RA Raj S.K., Srivastava A., Kumar S., Snehi S.K.; RT ; RL Submitted (25-FEB-2013) to the INSDC. RL Plant Molecular Virology, CSIR-National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U. P. 226001, India XX DR MD5; 1ef5bf8bac42090da310e153c8b3c9a2. XX CC On Feb 25, 2013 this sequence version replaced gi:374922587. XX FH Key Location/Qualifiers FH FT source 1..2764 FT /organism="Pedilanthus leaf curl virus-[Crape Jasmine]" FT /host="Tabernaemontana coronaria (crape jasmine) Chandni" FT /isolate="crape jasmine" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="Dr. S. K. Raj" FT /collection_date="16-Sep-2011" FT /db_xref="taxon:1143697" FT gene 97..501 FT /gene="AV2" FT CDS 97..501 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:M1RB73" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:M1RB73" FT /protein_id="AGG14316.1" FT /translation="MVPPINLVRKLCFTLTNVGSISDEFPETVHGFRCMLAVKYLQLVE FT NTYSPETKGYDLIRDLISVIRARNYVEATSRYNHFHARFEGTSPSQLRQPICEPCCCPH FT CPRHQGKGMGEQAHEQKAQDVQDVQKSRCS" FT gene 305..1075 FT /gene="AV1" FT CDS 305..1075 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="involved in encapsidation of virion" FT /db_xref="GOA:H6V7U4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H6V7U4" FT /protein_id="AFA26434.2" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQEFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1072..1476) FT /gene="AC3" FT CDS complement(1072..1476) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="increases viral replication" FT /db_xref="GOA:H6V7U5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H6V7U5" FT /protein_id="AFA26435.1" FT /translation="MDLRTGEFITAAQAENGVFIWEIPNPLYFKITEHHNRPFLMNHDI FT ITVQIQFNHNLRKALGIHKCFLAFRIWMTSQTPTGRFLTVFRTQVLKYLDNIGIISINN FT VLRAVDHVLWNVLHHIVNVEQSSSIKYNLY" FT gene complement(1217..1621) FT /gene="AC2" FT CDS complement(1217..1621) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator protein" FT /note="transcriptional activator for virus sense genes" FT /db_xref="GOA:H6V7U6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H6V7U6" FT /protein_id="AFA26436.1" FT /translation="MRPSSPSKGHSTQVPIKVQHRLAKKGTRRRRVDLHCGCSYFIALA FT CHNHGFTHRGIHHCSSSREWRVYLGDSKSPVFQDNRAPQPAIPNEPRHHHRPDTVQSQP FT EESVGDTQMFPSLPNLDDLTDSDWSFLNCL" FT gene complement(1524..2696) FT /gene="AC1" FT CDS complement(1524..2696) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /note="involved in virus replication" FT /db_xref="GOA:H6V7U7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H6V7U7" FT /protein_id="AFA26437.2" FT /translation="MPFGTHYILSTDIQVINIQNPIGTHLTKSMAPPKRFLIYAKNYFL FT TYPQCSLTKEEALSQFQNLSTPTNKKFIKICRELHEDGSPHLHVLIQFEGKYKCQNNRF FT FDLVSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDTLDWGEFQIDGRSARGGQQSANDAY FT AAAINTGSKSEALRVIKEIAPKDYVLQFHNLNANLDRIFTPPVEVYVSPFCSSSFDQVP FT DELEEWAAENVVGSAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCRHLDLSPKVYN FT NDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSY FT KEFLDDEKHSALKNWALKNATFITLEGPLYSGSNQSAAQASQEGDQASES" FT gene complement(2150..2452) FT /gene="AC4" FT CDS complement(2150..2452) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M1R585" FT /protein_id="AGG14317.1" FT /translation="MGLLISTCLSSSKGNTNARITDSSTWFPQPGQHISIRTFRELNQV FT PMSSPIWRRTETPLIGESFRSTEDLLEGVNSQPTTHTPQQLTQAVNQRLSESLRR" XX SQ Sequence 2764 BP; 739 A; 558 C; 652 G; 815 T; 0 other; acaggacggc cgcgccattt ttatggcccc cccaccgcat taactgtctg taacatatgg 60 gcccatgaga atggtccctc ctagcctaat tatttaatgg tcccccctat aaacttagtg 120 cgcaagttgt gtttcacgct taccaatgtg ggatccatta gtgacgagtt tcccgaaacc 180 gttcacggtt ttagatgtat gttagcagtt aaatatttgc agctcgtaga aaatacgtat 240 tccccagaga ctaagggcta cgatttaatt agggatttaa tttcagtaat aagggctagg 300 aattatgtcg aagcgaccag cagatataat catttccacg cccgcttcga aggtacgtcg 360 ccgtctcaac ttcgacagcc catatgcgag ccgtgctgct gcccccattg tccgcgtcac 420 caaggcaagg gcatgggcga acaggcccat gaacagaaag cccaggatgt acaggatgta 480 cagaagtcca gatgttccta gaggatgtga aggcccatgt aaggtccagt catttgagtc 540 cagacatgat atccagcaca ttggtaaagt catgtgtgtt agtgatgtta ctcgtggtat 600 tgggcttacc cacagggtag gcaagagatt ttgtgttaag tccgtttatg ttctgggtaa 660 gatctggatg gatgagaaca ttaaaactaa gaatcatacg aatagtgtta tgtttttcct 720 tgttagggat cgtaggcctg ttgataagcc tcaagagttt ggtgaggttt ttaatatgtt 780 tgataatgag cccagtacgg cgacagtgaa gaatgtgcat cgtgataggt accaggtgct 840 caggaagtgg cacgccactg tgacaggcgg tcaatatgca tcgaaggagc aggctctcgt 900 gaagaagttt attagggtta ataattatgt tgtgtataac cagcaagagg ctggcaagta 960 tgagaatcat actgagaatg cattgatgtt gtatatggcg tgtacgcacg cctctaaccc 1020 tgtgtatgct acattgaaga tacggatcta tttctatgat tcagtatcga attaataaag 1080 attatatttt attgaagacg attgttctac attcacaata tgatgtaata cattccataa 1140 tacatgatca actgctctaa gtacattatt aatactgata attcctatat tatctaaata 1200 cttaagaact tgggtcctaa agacagttaa gaaacgacca gtcggagtct gtgaggtcat 1260 ccagattcgg aaggctagga aacatttgtg tatccccaac gctttcctca ggttgtgatt 1320 gaactgtatc tggacggtga tgatgtcgtg gttcattagg aatggccggt tgtggtgctc 1380 tgttatcttg aaatacaggg gatttggaat ctcccagata aacacgccat tctctgcttg 1440 agctgcagtg atgaattccc ctgtgcgtaa atccatgatt gtggcaggct agtgctatga 1500 agtacgagca gccgcagtgt agatcaactc tccgacgcct ggtccccttc ttggctagcc 1560 tgtgctgcac tttgattgga acctgagtag agtggccctt cgagggtgat gaaggtcgca 1620 ttctttaaag cccaattttt gagtgcagag tgcttctcat catccaagaa ctctttatag 1680 cttgaattgg gtcctggatt gcagaggaag atagtgggaa ttccaccttt aatttgaact 1740 ggcttcccgt actttgtatt tgattgccag tccctttggg cccccatgaa ttccttaaag 1800 tgctttaggt aatgcggatc gacgtcatca atgacgttgt accaggcatc attattgtag 1860 acctttgggc ttaggtcgag gtgtctacac aaataattat gtggacccag tgacctagcc 1920 cacatcgtct tccccgtacg actatcgccc tctatcacta tacttatggg tctcaatggc 1980 cgcgcagcgg aacctaccac attttcagca gcccattcct caagttcatc tggaacttga 2040 tcaaaagaag aagaacagaa aggagaaaca taaacctcta ccggaggtgt aaaaatccta 2100 tctaaattag catttaaatt atgaaattgt aatacataat ctttgggagc tatctcctta 2160 atgactctga gagcctctga tttactgcct gtgttaattg ctgcggcgta tgcgtcgttg 2220 gctgactgtt gaccccctct agcagatctt ccgtcgatct gaaactctcc ccaatcaagg 2280 gtgtctccgt ccttctccat ataggacttg acatcggaac ttgatttagc tccctgaatg 2340 ttcggatgga aatgtgctga cctggttggg gaaaccaggt cgaagaatct gttattctgg 2400 catttgtatt tcccttcgaa ctggataagc acgtggagat gaggagaccc atcttcgtga 2460 agctctctgc agattttgat gaatttttta ttggtgggtg tggagaggtt ttgaaattgg 2520 gaaagtgctt cttctttggt gagtgagcac tgtggatatg tgaggaaata atttttggca 2580 tatattaaaa aacgttttgg aggagccatt gacttggtca aatgggtacc aattgggttc 2640 tggatgttta tcacctgtat atcggtactc aatatatagt gagtaccaaa tggcataatt 2700 gtaataaaag aactctaatt tgaaattcaa acgaaaaggc taaagcggcc atccgtctaa 2760 tatt 2764 //