ID JN710441; SV 1; linear; viral cRNA; STD; VRL; 6075 BP. XX AC JN710441; XX DT 14-FEB-2012 (Rel. 111, Created) DT 22-MAR-2013 (Rel. 116, Last updated, Version 2) XX DE Lettuce big-vein associated virus isolate Ls302 coat protein, protein 2, DE protein 3, protein 4, and protein 5 genes, complete cds. XX KW . XX OS Lettuce big-vein associated varicosavirus OC Viruses; Riboviria; Negarnaviricota; Haploviricotina; Monjiviricetes; OC Mononegavirales; Rhabdoviridae; Varicosavirus. XX RN [1] RP 1-6075 RX AGRICOLA; IND500644021. RA Verbeek M., Dullemans A.M., van Bekkum P.J., van der Vlugt R.A.A.; RT "Evidence for Lettuce big?vein associated virus as the causal agent of a RT syndrome of necrotic rings and spots in lettuce"; RL Plant Pathol. 62(2):444-451(2013). XX RN [2] RP 1-6075 RA Verbeek M., Dullemans A.M., van Bekkum P.J., van der Vlugt R.A.A.; RT ; RL Submitted (22-SEP-2011) to the INSDC. RL Biointeractions and Plant Health, Plant Research International, P.O. Box RL 69, Wageningen 6700 AB, The Netherlands XX DR MD5; 7dabcb5b5d6e8fada838e4a068817dd3. XX FH Key Location/Qualifiers FH FT source 1..6075 FT /organism="Lettuce big-vein associated varicosavirus" FT /segment="RNA 2" FT /host="lettuce" FT /isolate="Ls302" FT /mol_type="viral cRNA" FT /country="Netherlands" FT /collection_date="1999" FT /note="acronym: LBVaV" FT /db_xref="taxon:1985698" FT CDS 207..1400 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:H6UYZ0" FT /db_xref="InterPro:IPR004902" FT /db_xref="UniProtKB/TrEMBL:H6UYZ0" FT /protein_id="AFA36171.1" FT /translation="MAHPKLKILEAFSDVVEITGKTAGKESWDDESTIAMPSYKLSVLS FT DADAVREVKIFLTGLFVRSSPRAIAAALIMTWNMRSVDPVAVRIFPAKDKGKDTADVDV FT KNLEVAGVDYIDAMVETNVKDASDIEIIRAGAFIAASTLKMFAKSFTGWTQAWEHKHIQ FT KRYADFCKTEYPFKEFTTNTKCAETMYEAYQGQKLYQGTLGRILYALGDVTDPRQTEML FT FDQHLANTGMHIIPQFTNAQLSIGATTAGLLSALNYGQNFGTLMQLKKLINESLSKPPG FT PDNRATWRFARIFDPSVFQTLQTKYCADTVAILANINSMGKLSTETSNPLNIAVLKQMA FT PERKRYTRQVAKNIYHHFMVVARALNNDMFDTDKYKFVESDDEEEHVANEGETPVKE" FT CDS 1400..2491 FT /codon_start=1 FT /product="protein 2" FT /db_xref="UniProtKB/TrEMBL:H6UYZ1" FT /protein_id="AFA36172.1" FT /translation="MRDPTIVCKKTRKTTIGSKLREKLRRLSLTMTGRFVRDQSAMTKA FT IASPGKAGQETTKQTTSAEKLESENALLSTVKEMNQGWMSRLGAGNDYDETETDPADTY FT GDTEADLPPTIKPEHIKKETRKQDKALGIKNVAGTSESERKALKQWDEDENKSDTEKLA FT FLAGFRYRQDHNSVVLRAQAEQLKSLVDILTSSATSVSRAASDIVNATTMSTSKLAAAI FT TKHIEVPPHETVTKIEMPKLPLISSEAGSVSGVKSVDGKSVDEEIIDSNKKESTRIKEE FT AKTPKPQIITPPIIDSGPIITVGQMASVLGGEIKDILEFYEIGMEKFESVAKDLGLSYE FT GLLKKYGGLSGLKGTLKKKINLL" FT CDS 2614..3486 FT /codon_start=1 FT /product="protein 3" FT /db_xref="UniProtKB/TrEMBL:H6UYZ2" FT /protein_id="AFA36173.1" FT /translation="MSLKSAPYLSEISVANDDSGIGFDGGCADPYAPSRVPSRRWDYST FT KWDMKITGAAREFNLSKQPVLTGLINSMRMKTSLIHPEIHVVWRGLVPPAVCRDDVVVT FT LRFTPDRSEKMGLIAQHTHGMHLYMHHVFYPSHSIRVGPGEPLPWAVGFSVPDFSLDPN FT YTIAEVHVRLTGYFSELPEYDIQRDSELISIVPMEEHVTGYATSAPRIPNTAWVARGYK FT IGVNGNSLAKKIKFLQEIGVDIEALRMVGQLDNTLKKVSPRAIDGSPSAEAKSEAARLV FT NAHVKTLTA" FT CDS 3840..4334 FT /codon_start=1 FT /product="protein 4" FT /db_xref="UniProtKB/TrEMBL:H6UYZ3" FT /protein_id="AFA36174.1" FT /translation="MDEENVDITEDELSVISDLELDSITRVVGTNEIKTYEDYKQEEAN FT YLKVLDIIKKFSTSDTCECYRCELFERGDIGKFLTRSEFSKLAVLYWERCGRPRNSEAL FT EAFIGRHICIRCAASILLSHHPVIAMRADMRLREIYIENGDKPASSSGTLFSAKGKGPR FT I" FT CDS 4680..5633 FT /codon_start=1 FT /product="protein 5" FT /db_xref="UniProtKB/TrEMBL:H6UYZ4" FT /protein_id="AFA36175.1" FT /translation="MISLISDQVDSKGIVRMSDSQGDDDDSLSSLTWNSKNKLWGFLIN FT PVPITSGDLEKRMRISCMISSNAYRIGTNVAQVRFLLRIGTFPLVLSRELGFLCPSSSR FT FPSVIFVSPDKQTEMLRIISSYYSVGDTEEKNCWGILGERYLTTISEDISNLVVMAFPF FT LQGAFHCSSVYYLNFGCKMAAEGFHAMAREELRIALRSPVLWSDCPLKRVYDSLLQRIP FT TGVHTSHSEEKGDPSFLPLAEYCSSHRECWICGDLKLGVDRGIGADFRHLSERRTSSPD FT GLDAVMSAVSRMIYHHWSIPSWVSGAFRIAKFIGTH" XX SQ Sequence 6075 BP; 1746 A; 1273 C; 1470 G; 1586 T; 0 other; gagacgcaaa aatcataaaa aacttctact attttaccac ccaacgatct tgaaagctcc 60 tcgcggcaga ataaaataca actgtacgtt tcaaccgttc cgctattttc caggctgttc 120 gcattttctt ttcccctact tcgacctttt ccctatcccc ctattcccct atttccaaag 180 actttcggat tccatcaccc tataaaatgg cacaccccaa attgaagata ctagaggcat 240 tcagtgacgt cgtggaaatc acaggtaaga ctgccgggaa agaatcctgg gatgatgaaa 300 gcacaatagc tatgccctcc tacaaacttt ctgtactgtc cgacgccgat gctgttcgtg 360 aggtaaagat cttcctgaca gggctctttg tgaggtcctc tccgagggcg attgctgcag 420 ctctcatcat gacatggaac atgaggtctg ttgatcccgt ggctgtcaga atattccccg 480 caaaggacaa ggggaaggac acagcggatg tggatgtaaa gaatctggag gtggccgggg 540 tcgactacat agacgcaatg gtagagacca atgtgaagga tgcttctgat atagaaatca 600 tcagagccgg agcattcatc gctgcttcta cgctcaagat gttcgccaag tccttcactg 660 gatggactca agcttgggaa cacaagcata tccaaaaaag gtatgctgat ttctgtaaga 720 ccgagtatcc attcaaggaa ttcacgacaa acaccaagtg cgcagagacc atgtacgaag 780 cctaccaggg tcaaaaactg tatcaaggga ctctcggccg aatcctctac gctctgggag 840 atgtgacaga tccaaggcag actgagatgt tgtttgatca acatcttgcc aacactggca 900 tgcacatcat cccccagttc acaaatgctc aactctcgat cggtgccact acggcggggt 960 tgttaagtgc tctcaactac ggacagaact ttggcactct aatgcagctc aaaaagctca 1020 tcaatgagag tctcagcaaa ccaccgggtc cagacaacag agcaacctgg agatttgcca 1080 ggatctttga tccgtctgtc tttcaaaccc ttcagacaaa atactgtgca gataccgttg 1140 ccatcttagc caacatcaat tccatgggaa agctatctac agagactagc aatcctctga 1200 atattgctgt gctaaaacag atggccccgg agaggaagag gtacacaaga caggtggcga 1260 agaacatcta ccatcacttc atggtggttg ctagggccct gaataacgac atgttcgaca 1320 cagacaaata taagtttgtg gaatccgacg atgaggaaga acatgttgcg aatgagggag 1380 agacaccagt gaaggagtga tgagggatcc tactatcgta tgtaaaaaaa cgagaaagac 1440 aactataggt tcgaaactaa gagaaaaatt gaggcgatta tctttgacaa tgacaggaag 1500 gtttgttcga gatcagtcag ctatgacaaa ggccattgca tcacctggta aggcaggtca 1560 ggaaactacc aaacagacca caagtgcgga aaagttggaa agtgaaaatg cattactatc 1620 caccgtgaag gagatgaacc agggatggat gtctcgtcta ggtgcaggca atgattacga 1680 tgagactgag acagaccccg ctgatacata tggagataca gaagctgatc tgcctccaac 1740 tatcaaaccg gaacatataa agaaagaaac tcgcaaacaa gacaaggctc ttggaatcaa 1800 gaatgtggcg gggacttcgg agtctgaaag aaaagctctt aagcaatggg atgaggatga 1860 aaacaagagt gatacagaga agctggcctt cttagcagga ttcagatacc gtcaagatca 1920 caactctgtt gtactacgtg cacaggctga gcagttaaaa tcccttgtgg atatcctgac 1980 ctcgtctgca acctctgtat caagagccgc ttctgatatc gtaaatgcga ccacgatgtc 2040 gacttccaag ttggctgctg caatcaccaa acacatcgaa gttcctcccc atgagacagt 2100 gaccaagata gagatgccaa aacttcctct catcagctca gaagctggat ctgtctccgg 2160 agtgaagagt gttgatggta agtcggtcga tgaagaaata attgacagca acaagaagga 2220 gagtactagg atcaaggagg aggcaaagac tcccaagcct caaataatca cccctcctat 2280 tatcgatagt ggacctatta taacagttgg acaaatggca agtgtccttg gaggggagat 2340 taaggatatc ttagaattct atgagatcgg aatggagaag ttcgagtctg tagctaagga 2400 tttgggactc tcttatgaag gtcttctcaa gaagtacggg ggcctctctg gattgaaagg 2460 gacattgaag aagaagatca acctgctgtg aaaatcctct gaagaggaat cccaaggtga 2520 atgttagttt ctgtacctct gtaccatgat atcgtcaata agtaaaaaaa cgagaatata 2580 agtcaatatt tgtcaaagtc caattcggat atcatgtcgt taaaatctgc tccttacctg 2640 tctgaaatct cggtcgctaa tgatgactcc gggattggat ttgatggagg atgtgctgat 2700 ccttacgctc cgtctcgggt accctctcgt cgttgggatt actccaccaa atgggatatg 2760 aagataaccg gggcggcgag agaattcaac ctgtccaaac agcctgtcct cactgggctc 2820 atcaacagca tgaggatgaa gacatctctc attcatcccg agattcacgt ggtgtggaga 2880 gggttggttc ctcctgctgt ctgcagggac gatgtcgtcg tgactctccg gttcaccccg 2940 gatagaagtg agaagatggg tttgattgcc caacatactc atggaatgca tctctacatg 3000 catcatgtgt tctatcccag tcacagcata agggtgggtc ctggagaacc gcttccctgg 3060 gccgttggat tctctgttcc ggacttctcg ttggacccta attacacgat tgccgaggtg 3120 catgttcgcc tcacggggta tttctctgaa cttcctgagt acgatattca acgagactct 3180 gaactgatct ccattgtccc tatggaagag catgtgacag gatatgcgac ctccgctcct 3240 aggattccca acactgcttg ggtggccaga ggatataaga taggagttaa tggaaacagt 3300 ctggcaaaga agatcaaatt cctgcaggag atcggtgtgg atatagaggc tcttagaatg 3360 gtgggccagc tagataacac cctgaagaag gtgagtcccc gtgctataga tggatcaccg 3420 tctgcagagg cgaagagtga agctgcccgc cttgtgaatg ctcatgttaa gaccctcact 3480 gcttgacagg aggttcagag agacagtagt agatttgaga tgagggttga ctccttagtc 3540 aataaattgg atagctacac aagactggct cgttggttct tgatgtctct tcctggaata 3600 ataggagctc ttcattattt cttccattac gtgtcttctc tgtgatattg gttgtgtggt 3660 ctttcctgtc acttgtctag atggtgttag atgttagagt ctgtggttta tgatggaagt 3720 tagatttcca attccgtatt agattgtttg ttaaagatta gaaggtcatc atttgtttga 3780 atcaccgtaa ttggcctata tgtaaaaaaa cgagagtgta agctgatcat aattattaga 3840 tggacgagga gaatgtcgac ataactgagg atgagctttc tgtcatttct gacctagagt 3900 tggattcaat tactcgggtg gtaggcacaa acgagatcaa gacctacgag gactataagc 3960 aggaagaagc caactatctt aaggtcttgg atatcattaa gaagttctct acttcagaca 4020 cctgtgagtg ttacagatgc gagctgttcg agagaggaga tatcggaaaa tttctgacga 4080 ggtctgagtt ctctaaacta gcagtcctat actgggagag gtgtggacga cctagaaact 4140 cggaagcttt ggaggcattt ataggaaggc atatctgtat aagatgtgca gcctcaatcc 4200 tcctgagcca tcatcccgtg atcgctatga gggcggatat gagacttcgg gagatatata 4260 tagagaacgg agataaacct gcatcttctt cggggacatt gttctccgcc aaagggaaag 4320 gacctagaat ctaatgccct gaaccatttt tgcaatttaa aagtattaga aaaaacggtt 4380 ctaagacatt acatcttata tcattgcaga aaaacgtgag agctatattt gccctctcat 4440 aatagatctt gtgctctgca agtctactta gtacgatatc tgtaacacac caggtcttca 4500 accattcgag cttttgcgac tttaagatgg ctgagaggtg cttcgaagct gccatgacat 4560 acatgatccc aaacaagcag agtgtggaga tctttgaagg tcttctagga atataggatc 4620 ctgtcctaac gtctaaacat gtgagaaggg tgtatcagga gataacagtc tccttcctga 4680 tgatatcttt aatttccgat caggttgact ccaaggggat cgtgagaatg tctgacagtc 4740 agggggatga tgatgactca ttgagctcat tgacctggaa ttctaagaat aaactctggg 4800 gatttctaat aaatccggtc cctattacct cgggtgattt ggagaaacga atgagaatct 4860 cctgtatgat cagctccaat gcttacagaa ttgggacaaa tgtggcccag gtcagatttc 4920 tgctcaggat tgggacattc cctcttgttc tcagcagaga actgggattc ttatgtcctt 4980 cttcttctcg gtttccgagt gtgatatttg tatctcctga caagcagacg gagatgctca 5040 ggataatatc ctcttattac tctgtcgggg ataccgagga gaaaaactgc tgggggatat 5100 tgggagagag atatctcaca accatatcag aggacatttc caatctggtg gtcatggcct 5160 ttcccttctt gcaaggagcc ttccactgct cctctgtcta ttatctgaat ttcggatgta 5220 agatggcagc agagggattt catgcaatgg cccgagaaga acttaggatc gctctgagaa 5280 gtccggtctt gtggagcgat tgtcctctga aaagggtgta tgattcactc ttgcagagaa 5340 ttccgacagg cgttcatacc agccactcgg aagaaaaagg tgatccctca tttttgccat 5400 tggcagaata ttgtagcagt cacagggagt gttggatctg tggagatcta aaactaggtg 5460 tggatagggg aataggagca gatttcagac atctgtcaga aagaaggaca tcctctccag 5520 acgggttgga tgctgtgatg agtgctgtct ctagaatgat atatcatcac tggagcatcc 5580 catcctgggt ctctggagca tttaggattg caaagttcat aggaactcat taatctcaca 5640 ttcatatgct cctgcacaac atagcttcca tcttttgtct acaattaaat aatggagaac 5700 tttcatctta ttagaaaaaa cgatgtccca tttttgttta acccaatggg atatgaagat 5760 ctgtgtacat aggtggatct ggaacaagcc tccgtctttt cattcctaag gtatgtgaaa 5820 gggatgagcc aaaaagagtg tgaaatcttc aatcaactta agacacctgt tggagttaaa 5880 agtcatatgg tgtcctggaa cgagaagtat gggaaaaatc gggtcctgtg aacattgtga 5940 aaaataaaaa aagaagattt ccgggaatgt taaaacgttg gagtctacca gcccgctaaa 6000 gcaagttggg ttctaacaaa gccgtgttag tcggggtctt gattttgatg attttgtttt 6060 tgctgtgttt gcgac 6075 //