ID JN701424; SV 1; linear; genomic RNA; STD; VRL; 6496 BP. XX AC JN701424; XX DT 01-OCT-2012 (Rel. 114, Created) DT 01-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Apple stem grooving virus isolate HH, complete genome. XX KW . XX OS Apple stem grooving virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; OC Capillovirus. XX RN [1] RP 1-6496 RA Hu G., Hong N., Wang G.; RT ; RL Submitted (20-SEP-2011) to the INSDC. RL Colleage of Plant Science & Technology, Huazhong Agricultural University, RL Shizishan, Hongshan Zone, Wuhan, Hubei 430070, China XX DR MD5; 5ae3b652410b001705fa2abea900f2c1. DR EuropePMC; PMC4118050; 24998458. XX FH Key Location/Qualifiers FH FT source 1..6496 FT /organism="Apple stem grooving virus" FT /host="Pyrus pyrifolia cv. 'Huanghua'" FT /isolate="HH" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="03-Mar-2009" FT /db_xref="taxon:28347" FT CDS 37..6354 FT /codon_start=1 FT /product="241k polyprotein" FT /note="contains two consensus sequences associated with FT RNA-dependent RNA polymerase and NTP-binding helicase" FT /db_xref="GOA:J9QI49" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008745" FT /db_xref="InterPro:IPR008879" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:J9QI49" FT /protein_id="AFP74102.1" FT /translation="MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFSF FT SITPEDQELLTKHGLTLAPIGFKSHSHPISKMIENHLLYICIPSLLSSFKSVAFFSLRE FT NKVNGFLKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCLTRN FT KFPKVLFLHDELHFLSPFDVAFLFETIPEIDRVVATTIFPIELLFGDRVSKEPRVYTYK FT VHGSSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDR FT GRACNEFNHFDKPSCLLAEEMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAK FT LRQLEKRDLYPDELNFVYSFGEHFKNFGMRDDFDVSILQWVKDKFCQVMPHFIAASFFE FT PTEFHLNMRKLLNDLATKGIEVPLSVTILDKVNFIETRFHARMFDIAQAIGVNLDSLGK FT RFDYEAESEEYFSENGYVFMPSKSNPERNWILNSGSLKVDFSKLMRARRFRLRRDFLDP FT ISEGRSPRKQLFLELTRGIESDPNSEKSSENNGTKVEGSVENSQPHEASRTPMDTEDGQ FT GFEGSIPVDLINCFEPEEIKLPRRKRKNDCVFRAISAHLGIDSQDLLNFLVNEDISDEL FT LDCIEEDKGLSHEMIEEVLITKGLSMVYTSDFKEMAVLNRKYGVNGKMYCTIKGNHCEL FT SSKECFIRLLREGGEAQMSNENLNADSMFDLGKFVHNRDRAVKLAKSIARGTTGLLNDF FT DPALCKAMVTLSELFPENFSSTVGLRLGFAGSGKTHKVLQWINYTPSVKRMFISPRRML FT ADEVAAQLKGTACEVHTWEVALKKIDGTFMEVFVDEIGLYPPGYLTLLQMCAFRKIVKG FT QSERFLRGKIAELSKTCLSIRCFGDPLQLRYYSAEDTNLLDKTHEIDLMVKTIKHKYLL FT QGYRFGQWFQELINMPTRVDDSKFSRKFFADISSVKTEDYGLILVAKREDKGVFAGRVP FT VATVSESQGMTINKRVLICLDQNLFAGGANAAIVAITRSKVGFDFILKGNSLKEVQKMA FT QKTIWQFIIEGKTIPMERIVNMNPGASFYESPLDVGNSSIQDKASNDLFIMPFINLAEE FT EVDPEEIVGDVIQPVEWFKCHIPIFDTDPMLAEIFDKVAAKEKREFQSMLGLSNQFLDM FT EKNGCKIDILPFARQNVFPHHQSSDDVTFWAGVQKRIRKSNWRREKSKFEEFESQGKEL FT LNEFISMLPFEFKVNIKDIEDGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHVFLFMK FT SQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGESYYIHSGKNFF FT CLDSFATKNAHVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKL FT TLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKVDPRRHRILFAGDDMCSLSSLK FT RRRGERATRLMKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLK FT ECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVKNSKLLTGLSKSLIFEIGE FT GIGSEWQSSMSTISSRKSSQQISKSTQFHPQNFTKMQPSLNLTFSIASKDLSQMLRSPP FT DPVMALSCQTSNFLTTLKLIQLGKRATSTSTYTMESSWLELKQCCQISEVWKGESLFMM FT EPAWIQKEVTYARISSSLNLIAVTLVSDLSIACPPQMPTWRKDLGSAWTLIVRSMSRTQ FT SCLLLTLVWLTDASIQLDSWKPKLETQGGLHKPLVAVKHSSSMRKLKWQFWTKSLHCSW FT KKVHQTCTLKKGCLGVTKLGGHARSLPKGGQTQNCREREDLGPSQLELKDLEKMSLEDV FT LQQARRHRVGAYLWKTHIDPARELLTVPPPEGFKEGESFEGRELYLLLCNHYCKYLFGN FT IAVFGSSDKTQFPAVGFDTPPVHYNLTTTPKEGETEEQKKAREGSSGEKTKIWRIDLSN FT VVPELKTFAATSRQNSLNECTFRKLCEPFADLAREFLHERWSKGLATNIYKKWPKAFEK FT SPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVFEAGSESNLELEG" FT CDS 4788..5750 FT /codon_start=1 FT /product="36K protein" FT /note="contains consensus sequence found in the active site FT of several cellular and viral serine proteases" FT /db_xref="GOA:J9QF66" FT /db_xref="InterPro:IPR001815" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:J9QF66" FT /protein_id="AFP74103.1" FT /translation="MAIVNVNHFLKEVESTDLKIDAISSSELYKDATFFKPDVLNCIKR FT FESNVKVSSRSGDGLVLSDFKLLDDTEIDSIRKKSNKYKYLHYGVILVGIKAMLPNFRG FT MEGRVIVYDGACLDPERGHICSYLFKFESDCCYFGLRPEHCLSTTDANLAKRFRFRVDF FT DCPQYEQDTELFALDIGVAYRCVNSARFLETKTGDSGWASQAISGCEALKFNEEIKMAI FT LDQKSPLFLEEGAPNVHVEKRMFRGDKVRRSRSISAKRGPNSELQGKRGFRSLSARIER FT FGKNEFGRRASTSEAPPGRSVSMENSHRPGKGTSDGSSP" XX SQ Sequence 6496 BP; 1969 A; 1230 C; 1491 G; 1806 T; 0 other; aaatttaaca gcgcttaatt tccgcgcttt acgtcaatgg ctttcactta cagaaacccc 60 ctcgagattg caatcaacaa acttcccagc aagcagtctg atcaactgct ttccttgacc 120 accgacgaga ttgaaaagac cttggaagtg actaaccgct tcttctcttt ttcaatcaca 180 ccagaagatc aagaattgtt gaccaagcat ggtttaacac ttgcacccat agggtttaaa 240 tcacattccc acccaatatc caaaatgata gaaaatcatc tcttgtatat atgtattccg 300 agtcttttgt cttcctttaa gtcagttgcc tttttttcac ttagggagaa taaagtgaat 360 ggctttctca agatgcactc agttttttct cacggaaaaa tcaaatcttt agggatgtac 420 aatgccataa ttgatgggaa agacaaatat aggtacggtg atgtggagtt ttcatccttt 480 agggatagag tgattggtct tagagatcaa tgccttacac gtaataaatt tccaaaagtt 540 ctgttcctcc atgacgagtt gcacttctta agcccatttg acgtggcttt tctgtttgaa 600 acgattccag aaattgatag agttgttgca accacaattt ttccaataga acttttgttt 660 ggagatagag tctccaagga acccagggtt tacacctaca aggtccatgg ttcttcattt 720 tcattttatc cggatggtgt tgcctctgaa tgttatgaac agaatttggc taattctaaa 780 tggcccttta cctgcagtgg catacaatgg gctaatagaa aaatcagggt aaccaagtta 840 cagagtctct tcgcccatca tgttttctca tttgacagag gaagggcttg caacgaattc 900 aatcatttcg acaaacctag ctgtctgctt gcggaagaga tgcgcctttt aaccaagaga 960 tttgacaagg cagttatcaa cagaagcaca gtctcctccc tcagcacata catggcctgc 1020 cttaaaactg caaatgcggc ttcagccgtc gccaagttga gacagttaga gaaaagagat 1080 ctttacccag atgaattgaa cttcgtctac tcctttggag agcatttcaa gaattttgga 1140 atgagagatg actttgatgt gtcaattctt caatgggtta aagacaaatt ttgccaggtc 1200 atgccccact tcatcgccgc tagttttttt gagcctacag aatttcattt gaacatgcgc 1260 aaactgctga atgacttggc caccaaagga atagaggtcc ctctttctgt gactatcctg 1320 gacaaagtta acttcataga aactagattt catgccagga tgttcgacat agcacaggct 1380 atcggagtga atctggattc actgggaaaa agatttgatt atgaagctga gagtgaagaa 1440 tacttttcag aaaacggtta cgtctttatg ccctccaaat caaatccaga gaggaattgg 1500 attctgaatt ctggttcgct gaaagttgac ttttcaaaat tgatgagagc taggaggttc 1560 agattgagaa gagattttct agatcccata tctgaaggaa gatctcccag aaaacaactc 1620 ttcttggagt taacaagagg cattgaatca gatcctaatt ctgaaaagag tagtgagaat 1680 aatggaacaa aagttgaagg cagtgttgaa aatagccagc cacatgaggc ttcacgtact 1740 ccaatggata ctgaggacgg acaaggtttt gaaggttcca taccagttga tctgatcaac 1800 tgctttgaac cagaagaaat caagctccca aggagaaaaa ggaaaaatga ttgcgtcttc 1860 agggctatct ctgcacactt gggaattgac tctcaagatt tattgaattt tttggtcaat 1920 gaagacatat cagatgaact gcttgactgc attgaagaag acaaaggact ttcacatgaa 1980 atgattgaag aagttttgat cacaaaaggt ctctcaatgg tttacacttc tgacttcaaa 2040 gaaatggcag ttctcaacag aaagtatgga gtaaatggca agatgtactg cacaatcaaa 2100 ggcaatcatt gcgagctaag ttcaaaagag tgtttcatca gattgttgag agaaggcggt 2160 gaagcgcaaa tgtcaaatga gaatttaaac gctgattcta tgttcgacct tggaaagttt 2220 gtgcacaata gggatagagc tgtcaaacta gcaaaatcca tagcgagagg tacaacaggc 2280 ctcttgaacg actttgaccc agcgctctgc aaggccatgg taactctttc agagttattt 2340 cctgaaaact tttcttccac cgttgggcta agacttgggt ttgcgggctc tggcaagact 2400 cataaagtgc tgcaatggat taattacact ccaagtgtca aaagaatgtt tataagtcca 2460 aggagaatgc tggcggatga agttgcagct caacttaaag gaacagcttg tgaagtgcat 2520 acatgggagg ttgctttaaa gaagattgac gggaccttta tggaagtttt tgtcgatgaa 2580 attggtttgt acccacctgg atacctcaca ttgttgcaaa tgtgcgcttt tagaaaaatt 2640 gtcaaagggc aaagtgagag gttcttaagg ggcaaaattg ctgaattgtc gaaaacctgc 2700 ctaagcataa ggtgctttgg tgacccacta caattgaggt actactctgc tgaggacacc 2760 aatcttctgg ataagacgca tgagattgac ttgatggtaa agacaatcaa gcacaagtac 2820 cttcttcaag ggtacagatt tggtcaatgg ttccaagaat tgataaatat gccaactaga 2880 gtggacgact caaagttctc tagaaagttc tttgcagata tttcgagtgt caaaactgaa 2940 gattatggac tcatcctcgt tgctaagagg gaagataaag gagtttttgc tgggagagtt 3000 ccggtagcca ctgtgagcga atctcagggg atgaccataa ataaaagagt gttaatatgc 3060 ctggatcaaa acctatttgc tggaggagcc aacgctgcca ttgttgccat aacaaggtcg 3120 aaggttggat ttgattttat tttgaaagga aactcactga aagaagtgca aaaaatggca 3180 caaaagacaa tttggcagtt catcattgaa ggcaaaacta tcccgatgga aagaatagtg 3240 aacatgaacc ctggggccag cttttatgag agtcccctag atgttggaaa ttcatccatt 3300 caggacaagg cctccaatga cttattcata atgccattca taaatttggc tgaagaagag 3360 gtcgacccgg aggagattgt cggggatgtg atccaacccg ttgaatggtt caaatgtcat 3420 atccctattt ttgacaccga cccaatgttg gcagagatat ttgacaaagt tgctgctaaa 3480 gagaaaaggg agtttcaatc catgctgggt ttgtcaaatc aattcctcga tatggaaaag 3540 aacgggtgta aaattgacat attgcctttt gcaaggcaga atgtctttcc acaccatcaa 3600 tcctcagatg atgtcacctt ctgggcaggt gtgcaaaaga gaataaggaa gtctaattgg 3660 aggcgtgaaa agtcaaaatt tgaagaattc gaaagtcagg ggaaagagct gctcaacgaa 3720 ttcatttcta tgttgccttt tgagttcaaa gttaacatta aggacattga agatggagag 3780 aaaagtttct tggaaaaaag aaagttaaaa tctgagaaaa tgtgggcaaa tcattcagag 3840 aggtctgaca tagattggaa acttgaccac gtctttctct tcatgaaatc acagtactgc 3900 acaaaagaag gaaagatgtt cactgaggca aaagccggtc aaactctagc ctgctttcag 3960 cacattgttt tgtttagatt cggccccatg ttaagggcaa ttgagagcgc ttttttgcgt 4020 agctgtgggg aatcgtacta tatacactct ggcaaaaact tcttctgctt agatagcttt 4080 gcaacgaaaa atgcacatgt ctttgatgga ttttcaattg agtctgatta cacagccttc 4140 gattcttctc aggaccatgt aattttggct tttgagatgg cgcttctaca gtacttgggt 4200 gtgtcaaagg agtttcagct tgattacctt agattaaaac tgactcttgg ttgtcgactc 4260 ggttcactgg caataatgag gtttactggg gagttctgca ctttcctgtt caatacgttc 4320 gccaatatgc tctttactca attgaagtac aaagtagacc caagaaggca cagaattcta 4380 tttgctgggg atgacatgtg ttccttgagc tccctaaaaa gaagaagagg ggaaagggca 4440 acaagattga tgaagagctt ctctctcact gcagtggaag aggtaagaaa gtttccaatg 4500 ttctgtggat ggtatttaag tccatatgga attatcaagt ctccaaagct actatgggcc 4560 agaattaaga tgatgagcga gaggcagctc ttgaaagaat gtgtcgacaa ttacctattt 4620 gaagcaatat ttgcctacag attaggtgag aggctgtaca caatcttgaa agaagaagat 4680 ttcgaatacc attaccttgt gataagattt tttgtcaaaa attcaaagct gctaacggga 4740 ttgagcaaga gtttgatctt tgaaattgga gaaggtattg gatctgaatg gcaatcgtca 4800 atgtcaacca tttcctcaag gaagtcgagt caacagatct caaaatcgac gcaatttcat 4860 cctcagaact ttacaaagat gcaaccttct ttaaacctga cgttctcaat tgcatcaaaa 4920 gatttgagtc aaatgttaag gtctcctcca gatccggtga tggccttgtc ttgtcagact 4980 tcaaacttct tgacgacact gaaattgatt caattaggaa aaagagcaac aagtacaagt 5040 acttacacta tggagtcatc ctggttggaa ttaaagcaat gttgccaaat ttcagaggta 5100 tggaagggag agtcattgtt tatgatggag cctgcctgga tccagaaaga ggtcacatat 5160 gctcgtatct cttcaagttt gaatctgatt gctgttactt tggtctcaga cctgagcatt 5220 gcctgtccac cacagatgcc aacttggcga aaagatttag gttccgcgtg gactttgatt 5280 gtccgcagta tgagcaggac acagagctgt ttgctcttga cattggtgtg gcttacagat 5340 gcgtcaattc agctcgattc ttggaaacca aaactggaga ctcagggtgg gcttcacaag 5400 ccattagtgg ctgtgaagca ctcaagttca atgaggaaat taaaatggca attctggacc 5460 aaaagtctcc attgttcttg gaagaaggtg caccaaacgt gcacgttgaa aaaaggatgt 5520 ttaggggtga caaagttagg aggtcacgct cgatctctgc caaaaggggg ccaaactcag 5580 aactgcaggg aaagagagga tttaggtccc tctcagctag aattgaaaga tttggaaaaa 5640 atgagtttgg aagacgtgct tcaacaagcg aggcgccacc gggtaggagc gtatctatgg 5700 aaaactcaca tagacccggc aagggaactt ctgacggttc ctccccctga aggattcaag 5760 gaaggtgaaa gctttgaagg cagagagctt taccttcttc tttgtaacca ttattgtaaa 5820 tacctatttg gtaacatagc tgttttcggg tcgtctgata agacccagtt tcccgctgtt 5880 ggatttgata cccctccggt tcattacaat ttgacaacga ccccgaagga aggggagact 5940 gaagagcaaa agaaggccag agagggttcg tctggtgaaa aaacgaaaat ttggagaatc 6000 gacttgtcaa atgtcgtgcc tgaattgaaa acctttgctg ccacttcgag gcagaactct 6060 ttgaacgaat gtacgttcag gaagctttgt gagccatttg ctgacttggc tcgtgaattt 6120 cttcatgaaa ggtggtcaaa aggattggcc accaacatat acaagaaatg gcccaaagct 6180 ttcgaaaaaa gcccgtgggt ggcatttgac tttgccaccg gtctcaaaat gaatcgtcta 6240 acacctgatg aaaagcaggt gattgatagg atgaccaaga ggctttttcg cactgaagga 6300 caaaaagggg ttttcgaggc aggttcggag agtaatctgg aactggaggg ttaggagtcg 6360 tgtgaaattc cgcaaacttg gtcgcggtct tgcaggttga catgcctgcc tttatactta 6420 aataaagggt tcacccggtt ttctgtgcat ttccgggtta gtgtggtttt tctagagtct 6480 agagtttgtc ctctct 6496 //