ID JN700748; SV 1; linear; genomic RNA; STD; VRL; 4772 BP. XX AC JN700748; XX DT 03-JUL-2012 (Rel. 113, Created) DT 03-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE Lettuce necrotic stunt virus isolate L2, complete genome. XX KW . XX OS Lettuce necrotic stunt virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Tombusvirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-4772 RX DOI; 10.1007/s00705-012-1307-x. RX PUBMED; 22527864. RA Wintermantel W.M., Anchieta A.G.; RT "The genome sequence of lettuce necrotic stunt virus indicates a close RT relationship to Moroccan pepper virus"; RL Arch. Virol. 157(7):1407-1409(2012). XX RN [2] RP 1-4772 RA Wintermantel W.M., Anchieta A.G.; RT ; RL Submitted (20-SEP-2011) to the INSDC. RL Virology, USDA-ARS, 1636 East Alisal Street, Salinas, CA 93905, USA XX DR MD5; 3c025fd1d9a9f315db900c76c10718f8. XX FH Key Location/Qualifiers FH FT source 1..4772 FT /organism="Lettuce necrotic stunt virus" FT /host="lettuce" FT /lab_host="Nicotiana benthamiana" FT /isolate="L2" FT /mol_type="genomic RNA" FT /country="USA:California, Monterey County, Salinas Valley" FT /collection_date="1998" FT /note="virus stored as frozen sample in Nicotiana FT benthamiana tissue and reactivated for sequencing" FT /db_xref="taxon:167947" FT CDS join(167..1054,1058..2623) FT /codon_start=1 FT /ribosomal_slippage FT /product="92 kDa protein" FT /note="replication protein; P92" FT /db_xref="GOA:I6TGN2" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:I6TGN2" FT /protein_id="AFM91097.1" FT /translation="METIKRMIWPKKEIFVGDFATGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSMTKFVVELLKTDCAAKWEWFMKRRQRGDYIVPLSIASIPIIPLLSYATRV FT RAVSVKAFGNELTFNIRVPRPSVPKKGLLLRLAAGLALAPICALAMYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRMTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNTPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSSESLGVKGGLVRLPGVVTQTNRDIPSGVLLPQEVLEVRTGPPNAKDRNIFM FT VAGCPSQARFLVHNHCLKNLKRGLVERVFCVEKNGILTRTPQPTKGAFSRLSPFRKAVC FT EKVGVAHRLGYDGFLSYYNGAKLRTYKRAVESLHITPVSERDSHLTTFVKAEKISTAKG FT DPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGAIFREKW FT DRFDKPVAIGLDASRFDQHCSVEALQFEHSFYRALYPGNKLLSKLLDWQLHNKGKGYVP FT DGTITYRKEGCRMSGDINTSLGNYLLMCAMIYGYMRHLGINEFSLANCGDDCVLIVERR FT NLKQIQGTLPEYFLNLGYTMKVEKPVFQLEEVEFCQAHPVQFQGGWKMVRNVRTAMSKD FT VHCVNNIRDLATRRAWSNAQHFGGRALTSGIPVVDKFYSRFVVYDAPKKHQRIDTVTNV FT HKWRGSGGAYTVTPESRASFWAAFGLTGDEQLALEDRLDRWEMDLFGEEGVDAHEPSIL FT DSAVA" FT CDS 167..1057 FT /codon_start=1 FT /product="33 kDa protein" FT /note="replication protein; P33" FT /db_xref="GOA:I6UB69" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:I6UB69" FT /protein_id="AFM91098.1" FT /translation="METIKRMIWPKKEIFVGDFATGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSMTKFVVELLKTDCAAKWEWFMKRRQRGDYIVPLSIASIPIIPLLSYATRV FT RAVSVKAFGNELTFNIRVPRPSVPKKGLLLRLAAGLALAPICALAMYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRMTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNTPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSSESLGVK" FT CDS 2645..3820 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:I6T5Q6" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:I6T5Q6" FT /protein_id="AFM91099.1" FT /translation="MAMVARNNNTALVPYSGGKRGLQKAFGFGATIVGQKIYDNRGKIV FT GFMVEQGKKGLSKMANALGSGNGQKAQNLVGGMGGAIMAPVAVSRQLRGSKPRFTGRTA FT GSVTVTHREYVRQVNNTSAFTVNGGIVGNLYQLNPLNGTLFTWLPSIASNFDQYAFNNI FT TLHYVPLCSTTEVGRVGLYHDKDSQDPEPTDRQELANFSTLKETPPWGEVMLRIPTDRI FT KRYCDDSNAVDHKLIDLGQVGIATYGGAGANAVGDVFISYSITLFSPQPTSSLLSTRRQ FT SLLGATGLTTGPSYLTVSSTATVLTLTFRATGTFMVSGHFRDTGAAVLGLAGNINVNSL FT TVLDTVGLATSFSINCSVSALPSTITFTSTAITSSTVHCVRAVRANDATLL" FT CDS 3854..4423 FT /codon_start=1 FT /product="22 kDa protein" FT /note="P22" FT /db_xref="GOA:Q2Q1N6" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:Q2Q1N6" FT /protein_id="AFM91100.1" FT /translation="MDTEYEQVNKPWNELYKETTLGNKLTVNVGMEDQEVALLPSNFLT FT KVRVGLSGGYITMRRIRIRITPLVSRKAGVSGKLYLRDISDTTGRKLHCTESLDLGREI FT RLTMQHLDFSVSTRSDVPIVFGFEELVSPFLEGRELFSISVRWQFGLSKNCYSLPQSKW FT KVMYQEDALKVLKPSKKKASKTDSSV" FT CDS 3886..4404 FT /codon_start=1 FT /product="19 kDa protein" FT /note="P19" FT /db_xref="GOA:I6TZS6" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="UniProtKB/TrEMBL:I6TZS6" FT /protein_id="AFM91101.1" FT /translation="MERAIQGNDAREQANSERWNGGSGGSTSPFKFSDESPSWTEWRLH FT NDETNSNQDNPLGFKESWGFGKVVFKRYLRYDGTEASLHRVLGSWTGDSVNYAASRFFG FT INQIGCTYSIRFRGVSVTISGGSRTLQHLCEMAVRAKQELLQLTPVEVESDVSRRCPEG FT FKTFEEESE" FT CDS 4487..4663 FT /codon_start=1 FT /product="putative 6.5 kDa protein" FT /note="ORF6" FT /db_xref="UniProtKB/TrEMBL:I6TGN6" FT /protein_id="AFM91102.1" FT /translation="MMTSQVGLYGGFGRPWDGDMERVSYAVRLTSVELAIWAYAWISHN FT ITAQCKLDANLQP" XX SQ Sequence 4772 BP; 1244 A; 1005 C; 1292 G; 1231 T; 0 other; agaaattccc caggatttct cgacctagtt cgtttatctg gtgacttgcg cttctgttgc 60 tttgcgtagg gaatttctct ccttaattac tatctttaat tttggggttt gaaggttggg 120 tctacccttc ggggggataa attgtaactt ccaacaaata agcacaatgg agaccatcaa 180 gagaatgatt tggcctaaga aggagatctt tgtaggagat tttgcgaccg gagttaatag 240 gacggcaccg gtggacatct tccagttggt gtgtcgtgtg gttctgagat acatgaggac 300 agggaaaata gagtgtgatt ctgacagcat gacaaagttt gtggttgagt tacttaagac 360 agactgtgct gccaaatggg agtggtttat gaagagacgg cagaggggtg actacatcgt 420 ccctctatct atagcctcca tcccaatcat accgctgttg agttacgcca cgagggtacg 480 cgcagtctca gtcaaggctt tcggtaatga acttacgttc aatattcgag tgcctagacc 540 atctgtacct aagaaaggtt tactcctcag actggcggca ggactagcac ttgcacctat 600 atgcgcgcta gccatgtacg ctaccctacc tagggaaaaa ctgtcggtat tcaagcttag 660 aactgaggca cgggctcaca tggaggatga gagagaagcg acagattgtt tggtggttga 720 accggctcgt gaacttaagg ggaaggatgg agaggatctc ctcactggta gtagaatgac 780 aaaggtaatt gcgtccacgg gacgccctcg ccgcagaccg tacgctgcaa agattgcgca 840 agtggcaaga gcaaaggtgg gttaccttaa gaacacgcct gagaacaggt tgatctatca 900 gagagttatg attgagatca tggacaaaga ctgcgtccgg tatgttgaca gggatgtcat 960 attacctttg gctataggat gttgctttgt gtatccggat ggagtagagg agtcggcggc 1020 actgtggggt tcttcggaat cccttggtgt gaaataggga ggcctagtac gtctacctgg 1080 ggttgtaaca cagaccaata gagatatccc atctggtgtg ttgcttcccc aggaggtgct 1140 agaggttcgt acaggacctc ctaatgctaa ggaccgtaat atatttatgg ttgctggttg 1200 cccatcacag gcacggttct tagtacacaa tcactgcctg aaaaacctaa aaaggggtct 1260 tgtggagaga gttttctgtg tcgaaaagaa tggaattctc actcgcactc cacaacctac 1320 caaaggagcc tttagtcgtc tttccccgtt caggaaagca gtctgtgaga aggttggagt 1380 agcccaccga cttgggtatg acgggtttct gtcatactac aacggtgcga aactccgtac 1440 ttacaaacgg gctgtggaga gtctgcatat cacacctgtc tcggagaggg atagtcatct 1500 gactaccttc gtcaaggcgg agaagatatc gacagctaag ggtgacccag cacctagggt 1560 gatacagcct cgtaacccta ggtacaatgt cgagcttgga agatatctac ggcatatgga 1620 atccaaactg atgaaagctg ttgatggcgt atttggagaa acgacatgca tcaagggata 1680 tactgccgat gaggttggcg ctatttttcg ggagaaatgg gacaggtttg ataaacctgt 1740 agccataggc ctcgatgcgt caaggtttga tcaacactgt tccgtggagg ctttgcaatt 1800 cgagcatagt ttctacaggg ctctgtaccc tggtaacaag cttttgagca agttattgga 1860 ctggcaactc cataataaag gcaagggtta tgttcctgat gggactatta cctatcgtaa 1920 ggagggctgc cgcatgagtg gggatataaa cacctcgttg ggcaattatc tactaatgtg 1980 tgctatgatc tatggataca tgcgtcattt ggggatcaat gagtttagtc tggcgaactg 2040 tggggatgat tgtgttctaa ttgttgagcg caggaatctt aaacagatac agggcacact 2100 gcctgagtat ttccttaacc taggatatac aatgaaggtg gaaaaacctg tgtttcaatt 2160 ggaagaggtt gaattctgcc aggcacaccc cgtgcagttt caaggtggtt ggaagatggt 2220 caggaatgtc cgcactgcaa tgagcaaaga tgtgcactgc gtcaacaata tacgggatct 2280 cgctacgcgt agagcctgga gcaatgcaca gcactttggg ggaagggctt tgacatccgg 2340 tatcccggtt gttgataagt tctactctcg gtttgttgtg tatgatgccc ctaagaagca 2400 tcaacgtatt gacacagtaa ccaacgtgca taagtggcgg ggatccggtg gggcgtatac 2460 tgtgactcct gagtctaggg ctagtttttg ggctgccttt ggactcacgg gggatgaaca 2520 gttggcactc gaggaccgtt tggacagatg ggagatggat ctatttggag aggagggtgt 2580 tgacgctcat gagcccagca tccttgactc cgccgtagca tgaccaagca agataagtta 2640 cacaatggca atggtagcaa gaaacaacaa cacagcattg gtaccgtata gtggaggcaa 2700 acgtggcctc cagaaagcat ttggatttgg agctacaatc gtcgggcaaa agatttacga 2760 taatcgcggt aagattgtag ggttcatggt ggaacaagga aagaaaggtt taagtaagat 2820 ggctaatgct ctcggttctg gcaatggtca gaaagctcag aatctggttg gtgggatggg 2880 tggggccatt atggctcctg ttgcggtttc gaggcagctt cgtggaagta aaccccggtt 2940 tactggacgc acagctggtt ctgttactgt cacccaccgt gagtatgtac gacaggtaaa 3000 caacacgtct gccttcacag tcaatggggg tattgtcggg aatttgtatc aactgaaccc 3060 tttgaacggt actctgttca cttggttgcc ctccatagca tccaattttg atcaatacgc 3120 gttcaataac atcacgttgc actatgtccc cctctgtagt accactgagg taggtcgtgt 3180 tggattatat catgacaaag actcacagga tcctgagcct actgataggc aggagttggc 3240 gaactttagt acccttaaag agacaccccc ctggggtgaa gtaatgttgc gaatacccac 3300 tgataggatc aagaggtact gcgatgacag taacgcagtc gatcataagc taattgattt 3360 gggtcaagta ggcattgcta catatggggg tgctggcgct aacgctgtag gtgatgtgtt 3420 tatatcgtat agtattactt tattctcacc tcagcccact agctcattgc ttagcacaag 3480 acgacagagc cttctcggtg ccactggtct tacgactggc ccgagttact tgacggtgtc 3540 cagcacggcg accgttctca ccttgacgtt tagagctact ggcaccttta tggtctccgg 3600 tcacttccgt gacactggag cagccgtatt aggtctcgct ggcaatatca atgtaaactc 3660 actgacagtc ttggacacgg ttggcctggc cacctcgttc tccattaatt gttcagtgtc 3720 tgctttaccg tctaccatta cctttacctc cacagcaata acatcttcca cggtacactg 3780 tgtacgggcc gtaagggcca atgatgccac attgttgtaa ctgcgtaaag ggcttcttga 3840 acaagaccag ttcatggata ctgaatacga acaagtcaat aaaccatgga acgagctata 3900 caaggaaacg acgctaggga acaagctaac agtgaacgtt ggaatggagg atcaggaggt 3960 agcacttctc ccttcaaatt ttctgacgaa agtccgagtt ggactgagtg gaggctacat 4020 aacgatgaga cgaattcgaa tcaggataac ccccttggtt tcaaggaaag ctggggtttc 4080 gggaaagttg tatttaagag atatctcaga tacgacggga cggaagcttc attgcacaga 4140 gtccttggat cttggacggg agattcggtt aactatgcag catctcgatt tttcggtatc 4200 aaccagatcg gatgtaccta tagtattcgg tttcgaggag ttagtgtcac catttctgga 4260 gggtcgagaa ctcttcagca tctctgtgag atggcagttc gggctaagca agaattgcta 4320 cagcttaccc cagtcgaagt ggaaagtgat gtatcaagaa gatgccctga aggttttaaa 4380 accttcgaag aagaaagcga gtaagacaga ctcttcagtc tgattgagtg gaagcaagca 4440 ctaacctaga tagcatgtgg gttacttgca ctggcatgca gccgttatga tgacgagtca 4500 ggtcgggctc tacggtgggt ttggtcgccc atgggacgga gatatggaaa gggtctcgta 4560 cgctgtaaga ctaacttcgg ttgagcttgc gatatgggcc tatgcctgga taagtcataa 4620 cattactgcc cagtgtaaat tggatgccaa cttacaaccc taggagtact tgtggaacct 4680 catgatgaca cggttgatct cacccttcgg gggggctata gagatcgctg gaagcactac 4740 cggacaaccg gaacattgca gaaatgcagc cc 4772 //