ID JN692494; SV 1; circular; genomic DNA; STD; VRL; 2735 BP. XX AC JN692494; XX DT 13-FEB-2012 (Rel. 111, Created) DT 13-FEB-2012 (Rel. 111, Last updated, Version 1) XX DE Jatropha curcas mosaic virus isolate JC-3 segment DNA-A, complete sequence. XX KW . XX OS Jatropha curcas mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2735 RA Raj S.K., Srivastava A., Snehi S.K.; RT "Molecular characterization of a Begomovirus causing mosaic disease on RT Jatropha curcas in India"; RL Unpublished. XX RN [2] RP 1-2735 RA Raj S.K., Srivastava A., Snehi S.K.; RT ; RL Submitted (16-SEP-2011) to the INSDC. RL Plant Molecular Virology, CSIR-National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U. P. 226001, India XX DR MD5; f01364ccfa3fb4008385a4f967856ecb. XX FH Key Location/Qualifiers FH FT source 1..2735 FT /organism="Jatropha curcas mosaic virus" FT /segment="DNA-A" FT /host="Jatropha curcas L." FT /isolate="JC-3" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="Ashish Srivastava" FT /collection_date="Aug-2011" FT /db_xref="taxon:1027398" FT gene 135..491 FT /gene="AV2" FT CDS 135..491 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:H6UUY9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H6UUY9" FT /protein_id="AFA26412.1" FT /translation="MWDPLVNEFPDSVHGFRCMLAVKYLQLVEGTYSPDTLGYDLIRDL FT ISVIRAKNYVEATSRYHHFNSRLEGTSPSDLRQPIQQPCFCPHCPRHKKTSLDKQAHES FT EAQMVQDVQKPRCS" FT gene 295..1068 FT /gene="AV1" FT CDS 295..1065 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /function="involved in encapsidation of virion" FT /db_xref="GOA:H6UUZ0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H6UUZ0" FT /protein_id="AFA26413.1" FT /translation="MSKRPADIIISTPVSKVRRRLTFDSPFSSRASVPTVRVTKRQAWT FT NRPMNRKPRWYRMFKSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT VGKRFCVKSVYILGKVWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVFD" FT gene complement(1062..1466) FT /gene="AC3" FT CDS complement(1062..1466) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:H6UUZ1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H6UUZ1" FT /protein_id="AFA26414.1" FT /translation="MDSRTGELITAAPAMNGVFIWEVTNPLYFKIIQHDNKPFGMTMDI FT ITIQIRFNHNLRKALGLHQCWMDFKVWTTLHPQTWRFLRVFKTQVLKYLDSLGIICINT FT VVNGVEHVLYNVLDGTDTDEQSSLIKFNVY" FT gene complement(1207..1614) FT /gene="AC2" FT CDS complement(1207..1614) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator protein" FT /note="activator for virus sense genes" FT /db_xref="GOA:H6UUZ2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H6UUZ2" FT /protein_id="AFA26416.1" FT /translation="MQPSSPSKSPYTQVPIKVKHKTAKRKAIRRRRVDLNCGCSYYVHI FT NCRNHGFTHRGTHHCSSSDEWRLYLGGNKSPLFQDHSARQQTVRNDDGHNNHPDTIQPQ FT PEESVGTTPMLDGFQGLDDLTSSDLAFLEGI" FT gene complement(1559..2602) FT /gene="AC1" FT CDS complement(1559..2602) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:H6UUZ3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H6UUZ3" FT /protein_id="AFA26415.1" FT /translation="MSRPKRFQINAKNYFLTYPRCSLTKEEALSQIRALQTPTNTKFIK FT ICRELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGTFQIDGRSARGGQQSANDAYAAALNSGSKSEALKILRELAPRDYLRDFH FT HLSSNLDRIFTTQPAPYRNPFSLSSFDRVPEELDEWFHENVMDNAARPFRQKSIVIEGD FT SRTGKTMWARALGPHNYLCGHLDLNPKVYNNDAWYNVIDDVDPHYLKHLKEFMGAQKDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSRYKDFLDEEKNNALKAWALKNATFISLKEPL FT YSGTNQG" FT gene complement(2143..2445) FT /gene="AC4" FT CDS complement(2143..2445) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H6UUZ4" FT /protein_id="AFA26417.1" FT /translation="MGSLICTCSSSLKANTNARISDSSTWYPQPGQHISIRTFRELNPA FT PTSSPTSTRTVIHWNGEHSRSMEDLPEGVNNLQTTLTPQHLTAAVNQRLLRSLGN" XX SQ Sequence 2735 BP; 672 A; 580 C; 658 G; 825 T; 0 other; accggatggc cgcgctccct gctttgtggt ggaccccccc cacgtggaga tgtcccccac 60 tcagaacgct gcgtcaagct tgtataattg tggtccctct ttaagtactt gctcagcaag 120 ttggagtctg cacaatgtgg gaccctttgg taaacgagtt ccctgactct gtgcacggtt 180 tccggtgtat gcttgccgtg aaataccttc agctggtcga aggtacttat tctcctgata 240 cactcggtta cgatttaatc agggatttga tctctgtcat cagggcgaag aattatgtcg 300 aagcgaccag cagatatcat catttcaact cccgtctcga aggtacgtcg ccgtctgacc 360 ttcgacagcc cattcagcag ccgtgcttct gtccccactg tccgcgtcac aaaaagacaa 420 gcctggacaa acaggcccat gaatcggaag cccagatggt acaggatgtt caaaagccca 480 gatgttccta ggggatgtga aggcccatgt aaggtccagt cgtttgagtc cagacacgat 540 gtggtccata taggtaaggt catgtgcatc tctgatgtca ctcgtggtgt tgggctaact 600 catcgtgtgg gtaagaggtt ttgcgttaag tccgtttaca tcctggggaa ggtatggatg 660 gatgaaaata tcaagaccaa gaatcacact aatagcgtga tgttcttcct cgttagggat 720 cgtaggcctg ttgataagcc ccaggatttc ggtgaggtgt ttaacatgtt tgataatgaa 780 cctagtacag ctactgtgaa gaacatgcat cgtgatcgct atcaagtcct caggaagtgg 840 agtgccactg tcactggtgg tcagtatgct agcaaggagc aggctttagt tagacgtttt 900 tttagagtta ataattatgt tgtgtataat cagcaagagg ctggcaagta tgaaaatcat 960 actgagaatg cattgatgct gtacatggcg tgtactcacg cctctaatcc tgtatacgct 1020 acgctgaaaa ttagaatcta tttttatgat tcggtcttcg attaataaac attaaatttt 1080 attaaactag actgctcatc agtgtcagtt ccgtcgagta cattgtacaa tacatgctct 1140 acgccgttta caactgtatt aatacatata atccctaaac tatcgaggta ttttaatact 1200 tgggttttaa ataccctcaa gaaacgccag gtctgaggat gtaaggtcgt ccagaccttg 1260 aaatccatcc agcattggtg tagtcccaac gctttcctca ggttgtggtt gaatcgtatc 1320 tggatggtta ttatgtccat cgtcattccg aacggtttgt tgtcgtgctg aatgatcttg 1380 aaatagaggg gatttgttac ctcccagata aagacgccat tcatcgctgg agctgcagtg 1440 atgagttccc ctgtgcgtga atccatggtt gcggcagttg atgtgtacgt agtatgagca 1500 cccacagttt agatcaaccc tcctacgccg gatggcttta cgtttagcag ttttgtgttt 1560 aaccttgatt ggtacctgag tataggggct ctttgaggga gatgaaggtt gcatttttta 1620 gtgcccaggc tttcaatgcg ttattctttt cttcgtctag gaaatcttta tagcgggaat 1680 tgggccctgg attgcataag aagatagtgg gaataccccc tttaatttga actggctttc 1740 cgtattttgt gtttgattgc cagtccttct gggcccccat aaattctttt aagtgcttta 1800 gatagtgggg atctacgtca tcgatgacgt tgtaccatgc atcattgttg tagacctttg 1860 gatttagatc cagatgtcca catagataat tatgtggacc caatgcacga gcccacatag 1920 tcttacctgt ccgactatcg ccttcgatta cgatggactt ctgtctgaag ggccgcgcag 1980 cgttatccat cacgttttcg tgaaaccact cgtcgagttc ttctggaact cggtcaaatg 2040 aagagaggga gaaagggttt cgatacggag ccggttgtgt tgtaaaaatc cgatccaggt 2100 tggagcttaa atgatggaag tctcttaaat aatccctagg tgctaattcc ctaaggatct 2160 taagagcctc tgatttactg ccgctgttaa gtgctgcggc gtaagcgtcg tttgcagatt 2220 gttgaccccc tctggcagat cttccatcga tctggaatgt tccccattcc aatgtatcac 2280 cgtccttgtc gatgtaggac ttgacgtcgg agctggattt agctccctga atgttcggat 2340 ggaaatgtgt tgacctggtt ggggatacca ggtcgaagaa tcgctgattc tggcatttgt 2400 atttgccttc aaactggatg agcacgtgca gatgaggctc cccattctcg tggagttccc 2460 tgcagatttt gatgaattta gtgtttgttg gtgtttgaag cgctctaatt tgtgaaagtg 2520 cctcttcttt agttagagag cacctaggat aagtgaggaa atagttttta gcgtttattt 2580 gaaagcgctt aggtcgagac attctctctc ctcaaacggt actcaaatat taagccccca 2640 tattagggac tcaatagata catgactacc aaatggcata gatgtaaata atgggaatat 2700 aatttgaatt caaaagcggc catccgtata atatt 2735 //