ID   JN688725; SV 1; circular; genomic DNA; STD; VRL; 2620 BP.
XX
AC   JN688725;
XX
DT   04-DEC-2012 (Rel. 115, Created)
DT   04-DEC-2012 (Rel. 115, Last updated, Version 1)
XX
DE   Pepper golden mosaic virus isolate Turrialba 1, complete genome.
XX
KW   .
XX
OS   Pepper golden mosaic virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2620
RA   Vargas J.A., Hernandez E., Barboza N., Hammond R., Mora F., Rojas M.,
RA   Gilbertson R., Ramirez P.;
RT   "Characterization of whitefly and whitefly-borne viruses populations";
RL   Unpublished.
XX
RN   [2]
RP   1-2620
RA   Vargas J.A., Hernandez E., Barboza N., Hammond R., Mora F., Rojas M.,
RA   Gilbertson R., Ramirez P.;
RT   ;
RL   Submitted (17-SEP-2011) to the INSDC.
RL   Centro de Investigacion en Biologia Celular y Molecular, University of
RL   Costa Rica, Sabanilla, San Pedro, San Jose 12060, Costa Rica
XX
DR   MD5; 5176100471a0111ec4a41f38a1a5f33b.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2620
FT                   /organism="Pepper golden mosaic virus"
FT                   /isolate="Turrialba 1"
FT                   /mol_type="genomic DNA"
FT                   /country="Costa Rica"
FT                   /lat_lon="9.57 N 83.42 W"
FT                   /collection_date="28-Oct-2008"
FT                   /db_xref="taxon:223301"
FT   gene            209..964
FT                   /gene="cp"
FT   CDS             209..964
FT                   /codon_start=1
FT                   /gene="cp"
FT                   /product="truncated coat protein"
FT                   /db_xref="GOA:K9LXT7"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:K9LXT7"
FT                   /protein_id="AFQ00682.1"
FT                   /translation="MVKRDAPWRLMAGTSKVSRSANYSRGTGMGPKFDKAAAWVNRPMY
FT                   RKPRIYRTFRSSDVPRGCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT                   CVKSAYVLGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATV
FT                   KNDLRDRYQVMHRFSAKVTGGQYASNEQALVRRFWKVNNYVVYNHQEAGKYENHTENAL
FT                   LLYMACTHASNPLYATLKIRIYFYDSITN"
FT   gene            complement(961..1359)
FT                   /gene="AC3"
FT   CDS             complement(961..1359)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="AC3"
FT                   /db_xref="GOA:K9LY91"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:K9LY91"
FT                   /protein_id="AFQ00683.1"
FT                   /translation="MDSRTGESITVRQAENSVFIWEVPNPLFFRIQRVEAPLDTRTRIY
FT                   HIEVRFNHNLRRALALHKAFLHFQVWTTSMTASGTTYLNRFKFRVMLYLHRLGAIGINN
FT                   VIRAVRFATDKSYVNYVLENHEIKYKFY"
FT   gene            complement(1106..1495)
FT                   /gene="AC2"
FT   CDS             complement(1106..1495)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="TrAP"
FT                   /db_xref="GOA:H2DFB8"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:H2DFB8"
FT                   /protein_id="AFQ00684.1"
FT                   /translation="MLNSSSSTLPSIKAQHRIAKKRPVRRRRIDLNCGCSIFLHINCAN
FT                   NGFTHRGEHHCASGREFRFYLGGSKSPIFQDTTSRGPVGHQNQDIPHRSPVQPQPTPSV
FT                   GSPQGIPSFPSLDDFDDSFWDDIFK"
FT   gene            complement(1437..2486)
FT                   /gene="AC1"
FT   CDS             complement(1437..2486)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="truncated Rep"
FT                   /db_xref="GOA:K9LYP3"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:K9LYP3"
FT                   /protein_id="AFQ00685.1"
FT                   /translation="MPLPPKSFRLQCKNIFLTYPQCDIPKDEALEMLQSLKWSVVKPIY
FT                   IRVSREEHSDGFPHLHCLIQLTGKCNIKDARFFDITHPRRSAQFHPNVQAAKDTNAVKN
FT                   YITKDGDYCETGQYKVSGGSKANKDDVYHNAVNAASAGEALDIIKAGDPRTFIVSYHNV
FT                   KSNIERLFKPPPKPWTPPYPLSSFNNVPEDMQHWVAEYFGRSSAARPDRPISIVIEGDS
FT                   RSGKTMWARALGPHNYLSGHLDFNSKVYSNDVEYNVIDDITPHYLKLKHWKELIGAQRD
FT                   WQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYIAFLNKEENAPLRAWTQKNAQFVILHAP
FT                   LYKSTAQDS"
XX
SQ   Sequence 2620 BP; 679 A; 553 C; 634 G; 754 T; 0 other;
     accggatggc cgcgattttt tggagtcatt gggggaccac tcagaataga gggctgagat        60
     taaatagata aagagagggg accaccaatt atttgatttt tgactgccca atcacatccc       120
     gcctgtcaag tctagatatt tgtgccttgg tgaccaaggt gtggtcctat aaatgcacgt       180
     gcatgtgcat ttagaccttt aattcaaaat ggttaagcgg gatgccccat ggcgtttaat       240
     ggcggggacc tccaaggttt cccgctctgc taattattca cgtggcacgg gtatgggccc       300
     taaattcgat aaggccgctg cgtgggttaa caggcccatg tacaggaagc ccaggatata       360
     tcggaccttt agaagctcag atgttcctag aggctgtgaa ggaccgtgta aggtccagtc       420
     atttgagcag cggcatgata tctctcatgt tggcaaggtc atgtgcattt cggacgtgac       480
     acgtggtaat ggtattactc atcgtgtagg caagcgtttc tgtgtcaagt ctgcatatgt       540
     tttgggtaag atatggatgg atgagaatat caagctgaag aaccacacaa acagcgtcat       600
     gttctggttg gtccgagata ggagaccata tggtacccct atggatttcg ggcaggtgtt       660
     caacatgtat gacaacgagc ccagtacagc cactgtaaag aacgatctgc gtgatcgtta       720
     ccaagttatg cacaggttct cggctaaggt gacaggtgga cagtatgcca gcaacgagca       780
     ggcgttggtt aggcgatttt ggaaggtgaa caactacgtt gtctacaacc atcaagaagc       840
     tggcaaatac gagaatcata ctgagaacgc cctcttattg tatatggcat gtacgcatgc       900
     atctaacccc ctctacgcga cattgaaaat tcgaatctat ttctatgatt cgataacaaa       960
     ttaataaaat ttgtatttta tttcatgatt ctcaagtaca taatttacat aggatttgtc      1020
     cgtcgcaaag cgaacagctc gaattacatt gtttatgcct atggccccta gtctatgtaa      1080
     atacaacatg acacgaaatt tgaatctatt taaatatgtc gtcccagaag ctgtcatcga      1140
     agtcgtccag acttggaaat gaaggaatgc cttgtggaga gccaacgctc ggcgtaggtt      1200
     gtggttgaac cggacttcga tgtggtatat cctggttctg gtgtccaacg gggcctcgac      1260
     tcgttgtatc ctgaaaaata ggggatttgg aacctcccaa ataaaaacgg aattctctgc      1320
     ctgacgcaca gtgatgctct ccccggtgcg tgaatccatt atttgcgcag ttgatgtgga      1380
     ggaagataga gcagccgcag tttaggtcta ttcgtcgtct gcgaacaggt ctctttttag      1440
     ctatcctgtg ctgtgctttt atagagggga gcgtggagga tgacgaattg agcatttttt      1500
     tgtgtccacg ctctcaaagg tgcattttcc tctttgttga ggaaagctat atagctgcta      1560
     ccttccccag gattgcacag cacaattgat ggtatcccgc ctttaatttg aactggcttt      1620
     ccgtatttac agttggactg ccagtccctt tgggccccaa taagctcttt ccagtgtttc      1680
     agctttagat aatggggcgt gatatcatca atgacgttat actccacatc gtttgaatag      1740
     acctttgaat tgaaatcaag gtgaccgctc aaataattat gtgggcctaa tgcacgtgcc      1800
     cacattgtct tgccgcttcg cgaatcgccc tcaatgacaa tactaatcgg tctatctggc      1860
     cgcgcagcgg aactccgacc aaaatattca gcaacccaat gttgcatatc ctcaggaacg      1920
     ttattaaacg acgaaagtgg atacggagga gtccatggtt taggaggagg tttgaacagg      1980
     cgctcgatgt tagacttaac gttatgatag ctgacaatga acgttcttgg atctccagct      2040
     tttataatgt cgagcgcctc tcccgcactt gctgcattta cagcgttatg gtagacgtcg      2100
     tctttatttg ctttggaacc tccggaaact ttgtactgtc cagtttcaca ataatcacca      2160
     tctttagtga tgtaattctt tacggcattt gtgtctttag ccgcttgaac gtttggatga      2220
     aactgggcag atctccgagg gtgagtaatg tcgaagaacc gagcatcttt gatgttgcac      2280
     tttcctgtta actggatgag acagtgcaag tgcggaaacc catcggaatg ctcctcccgc      2340
     gatacccgta tgtatatggg ttttacaact gaccatttta acgactggag catttcgaga      2400
     gcttcatcct ttgggatatc gcattgtgga tatgttaaaa aaatgttttt acattgtaaa      2460
     cgaaatgatt ttggtggtag tggcattttt gcaaatatgt tgtaggactc caggagagtc      2520
     cctcataaaa ccgtactatg tttgtggagt cctggagtcc cttaaatact agaactctct      2580
     gggggaactc caggggcaaa agcggccatc ctataatatt                            2620
//