ID   JN688724; SV 1; circular; genomic DNA; STD; VRL; 2619 BP.
XX
AC   JN688724;
XX
DT   04-DEC-2012 (Rel. 115, Created)
DT   04-DEC-2012 (Rel. 115, Last updated, Version 1)
XX
DE   Pepper golden mosaic virus isolate Turrialba 2, complete genome.
XX
KW   .
XX
OS   Pepper golden mosaic virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2619
RA   Vargas J.A., Hernandez E., Barboza N., Hammond R., Mora F., Rojas M.,
RA   Gilbertson R., Ramirez P.;
RT   "Characterization of whitefly and whitefly-borne viruses populations";
RL   Unpublished.
XX
RN   [2]
RP   1-2619
RA   Vargas J.A., Hernandez E., Barboza N., Hammond R., Mora F., Rojas M.,
RA   Gilbertson R., Ramirez P.;
RT   ;
RL   Submitted (17-SEP-2011) to the INSDC.
RL   Centro de Investigacion en Biologia Celular y Molecular, University of
RL   Costa Rica, Sabanilla, San Pedro, San Jose 12060, Costa Rica
XX
DR   MD5; c6851573944ffbc0b8f8813ac6b85e6e.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2619
FT                   /organism="Pepper golden mosaic virus"
FT                   /isolate="Turrialba 2"
FT                   /mol_type="genomic DNA"
FT                   /country="Costa Rica"
FT                   /lat_lon="9.58 N 83.42 W"
FT                   /collection_date="28-Oct-2008"
FT                   /db_xref="taxon:223301"
FT   gene            208..963
FT                   /gene="cp"
FT   CDS             208..963
FT                   /codon_start=1
FT                   /gene="cp"
FT                   /product="truncated coat protein"
FT                   /db_xref="GOA:K9LXT7"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:K9LXT7"
FT                   /protein_id="AFQ00678.1"
FT                   /translation="MVKRDAPWRLMAGTSKVSRSANYSRGTGMGPKFDKAAAWVNRPMY
FT                   RKPRIYRTFRSSDVPRGCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT                   CVKSAYVLGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATV
FT                   KNDLRDRYQVMHRFSAKVTGGQYASNEQALVRRFWKVNNYVVYNHQEAGKYENHTENAL
FT                   LLYMACTHASNPLYATLKIRIYFYDSITN"
FT   gene            complement(960..1358)
FT                   /gene="AC3"
FT   CDS             complement(960..1358)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="AC3"
FT                   /db_xref="GOA:K9LZS3"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:K9LZS3"
FT                   /protein_id="AFQ00679.1"
FT                   /translation="MDSRTGESITVRQAENSVFIWEVPNPLFFRIQRVEAPLDTRTRIY
FT                   HIEVRFNHNLRRALALHKAFLHFQVWTTSMTASGTTYLNRFKFRVMLYLHRVGAIGINN
FT                   VIRAVRFATDKSYVNYVLEHHEIKYKLY"
FT   gene            complement(1105..1494)
FT                   /gene="AC2"
FT   CDS             complement(1105..1494)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="TrAP"
FT                   /db_xref="GOA:H2DFB8"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:H2DFB8"
FT                   /protein_id="AFQ00680.1"
FT                   /translation="MLNSSSSTLPSIKAQHRIAKKRPVRRRRIDLNCGCSIFLHINCAN
FT                   NGFTHRGEHHCASGREFRFYLGGSKSPIFQDTTSRGPVGHQNQDIPHRSPVQPQPTPSV
FT                   GSPQGIPSFPSLDDFDDSFWDDIFK"
FT   gene            complement(1436..2485)
FT                   /gene="AC1"
FT   CDS             complement(1436..2485)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="Rep"
FT                   /db_xref="GOA:K9M131"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:K9M131"
FT                   /protein_id="AFQ00681.1"
FT                   /translation="MPLPPKSFRLQCKNIFLTYPQCDIPKDEALEMLQSLKWSVVKPIY
FT                   IRVSREEHSDGFPHLHCLLQLTGKCNIKDARFFDITHRRRSAQFHPNVQAAKDSNAVKN
FT                   YITKDGDYCETGQYKVSGGSKANKDDVYHNAVNAASAGEALDIIKAGDPRTFIVSYHNV
FT                   KSNIERLFKPPPKPWTSPYPLSSFNNVPEDMQHWVAEYFGRSSAARPDRPISIVIEGDS
FT                   RSGKTMWARALGPHNYLSGHLDFNSKVYSNDVEYNVIDDITPHYLKLKHWKELIGAQRD
FT                   WQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYIAFLNKEENAPLRAWTQKNAQFVILHAP
FT                   LYKSTAQDS"
XX
SQ   Sequence 2619 BP; 674 A; 555 C; 638 G; 752 T; 0 other;
     accggatggc cgcgattttt cggagtcctt gggggaccac tcagaataga gggctgagat        60
     tagatagata aagagagggg accaccaatt acttgatttt gactgcccaa tcacatcccg       120
     cctgtcaagt ctagatattt gtgccttggt gaccaaggtg tggtcctata aatgcacgtg       180
     catgtgcatt tagaccttta attcaaaatg gttaagcggg atgccccatg gcgtttaatg       240
     gcggggacct ccaaggtttc ccgctctgct aattattcac gtggcacggg tatgggccct       300
     aaattcgata aggccgctgc gtgggttaac aggcccatgt acaggaagcc caggatatat       360
     cggaccttta gaagctctga tgttcctaga ggctgtgaag gaccgtgtaa ggtccagtca       420
     tttgagcagc ggcatgatat ctctcatgtt ggcaaggtca tgtgcatttc ggacgtgaca       480
     cgtggtaatg gtattactca tcgtgtaggc aagcgtttct gtgtcaagtc tgcatatgtt       540
     ttgggtaaga tatggatgga tgagaatatc aagttgaaga accacaccaa cagcgtcatg       600
     ttctggttgg tccgagatag gagaccatat ggtaccccta tggatttcgg gcaggtgttc       660
     aacatgtatg acaacgagcc cagtacagcc actgtaaaga acgatctgcg tgatcgttac       720
     caagttatgc acaggttctc ggctaaggtg acaggtggac agtatgccag caacgagcag       780
     gcgttggtta ggcgattttg gaaggtcaac aactacgtgg tgtacaacca tcaggaagcg       840
     ggcaaatacg agaatcatac tgagaacgcc ctcttattgt atatggcatg tacgcatgca       900
     tctaaccctc tgtacgcgac attgaaaatt cgaatctatt tttatgattc gataacaaat       960
     taataaagtt tgtattttat ttcatgatgc tcaagtacat aatttacata ggatttgtcc      1020
     gtcgcaaagc gaacagctcg aattacattg tttatgccta tggcccctac tctatgtaaa      1080
     tacaacatga cgcgaaattt gaatctattt aaatatgtcg tcccagaagc tgtcatcgaa      1140
     gtcgtccaga cttggaaatg aaggaatgcc ttgtggagag ccaacgctcg gcgtaggttg      1200
     tggttgaacc ggacttcgat gtggtatatc ctggttctgg tgtccaacgg ggcctcgact      1260
     cgttgtatcc tgaaaaatag gggatttgga acctcccaaa taaaaacgga attctctgcc      1320
     tgacgcacag tgatgctctc cccggtgcgt gaatccatta tttgcgcagt tgatgtggag      1380
     gaagatagag cagccgcagt ttaggtctat tcgtcgtctg cgaacaggtc tctttttagc      1440
     tatcctgtgc tgtgctttta tagaggggag cgtggaggat gacgaattga gcattttttt      1500
     gtgtccacgc tctcaaaggt gcattttcct ctttgtttag gaaagctata tagctgctac      1560
     cttcccctgg attgcacagc acaattgatg gtatcccgcc tttaatttga actggctttc      1620
     cgtatttaca gttggactgc cagtcccttt gggccccaat aagctctttc cagtgtttca      1680
     actttagata atggggcgtg atatcatcaa tgacgttata ctccacatcg tttgaataga      1740
     cctttgaatt gaaatcaagg tgaccgctca aataattatg tgggcctaat gcacgtgccc      1800
     acattgtctt gccgcttcgc gaatcgccct caatgacaat actaatcggt ctatctggcc      1860
     gcgcagcgga actccgacca aaatattcag caacccaatg ttgcatatcc tcaggaacgt      1920
     tattaaacga ggaaagtgga tacggagaag tccatggttt aggaggaggt ttgaacaggc      1980
     gctcgatgtt agacttaacg ttatgatagc tgacaatgaa cgttcttgga tctccagctt      2040
     ttataatgtc gagcgcctct cccgcacttg ctgcatttac agcgttatgg tagacgtcgt      2100
     ctttatttgc tttggaacct ccggaaactt tgtactgtcc agtttcacaa taatcaccat      2160
     ctttagtgat gtaattcttt acggcatttg agtctttagc cgcctgaacg tttggatgaa      2220
     actgggcaga tctccgacgg tgagtaatgt cgaagaaccg agcatctttg atgttgcact      2280
     ttcctgttaa ctggaggaga cagtgcaagt gcggaaaccc atcggaatgc tcctcccgcg      2340
     atacccgtat gtatattggt tttacaactg accattttaa cgactggagc atttcgagag      2400
     cttcatcctt tgggatatcg cattgtggat atgttaaaaa aatgttttta cattgtaaac      2460
     gaaatgattt tggtggtagt ggcatttttg caaatatgtt gtaggactcc aggagagtcc      2520
     ctcataaaac cgtactatgt ttgtggagtc ctggagtccc ttaaatacta gaactctctg      2580
     ggggaactcc aggggcaaaa gcggccatcc tataatatt                             2619
//