ID JN680353; SV 1; linear; genomic DNA; STD; VRL; 2794 BP. XX AC JN680353; XX DT 05-OCT-2011 (Rel. 110, Created) DT 03-SEP-2012 (Rel. 114, Last updated, Version 3) XX DE Tomato yellow leaf curl virus - Huasteca, complete genome. XX KW . XX OS Tomato yellow leaf curl virus - Huasteca OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2794 RX PUBMED; 22684489. RA Banuelos-Hernandez B., Mauricio-Castillo J.A., Cardenas-Conejo Y., RA Guevara-Gonzalez R.G., Arguello-Astorga G.R.; RT "A new strain of tomato severe leaf curl virus and a unique variant of RT tomato yellow leaf curl virus from Mexico"; RL Arch. Virol. 158(9):1835-1841(2012). XX RN [2] RP 1-2794 RA Banuelos-Hernandez B., Mauricio-Castillo J.A., Arguello-Astorga G.R.; RT ; RL Submitted (24-AUG-2011) to the INSDC. RL Molecular Biology, Instituto Potosino de Investigacion Cientifica y RL Tecnologica A.C., Camino a la Presa San Jose 2055, San Luis Potosi, S.L.P. RL 78216, Mexico XX DR MD5; 71eaa19994918df07b476e075df6ec93. XX FH Key Location/Qualifiers FH FT source 1..2794 FT /organism="Tomato yellow leaf curl virus - Huasteca" FT /segment="DNA-A" FT /host="tomato" FT /mol_type="genomic DNA" FT /country="Mexico" FT /collection_date="01-Jul-2011" FT /db_xref="taxon:1086072" FT gene 190..540 FT /gene="V2" FT CDS 190..540 FT /codon_start=1 FT /gene="V2" FT /product="MP" FT /note="movement protein" FT /db_xref="GOA:G5DRC6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:G5DRC6" FT /protein_id="AEP68829.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PKAQNIQNVSKS" FT gene 350..1126 FT /gene="V1" FT CDS 350..1126 FT /codon_start=1 FT /gene="V1" FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:G5DRC7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:G5DRC7" FT /protein_id="AEP68833.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSNRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDIPRGCEGPCKVQSYEQRDDIKHTGVVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1123..1527) FT /gene="C3" FT CDS complement(1123..1527) FT /codon_start=1 FT /gene="C3" FT /product="REn" FT /note="replication enhancer protein" FT /db_xref="GOA:G5DRC8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G5DRC8" FT /protein_id="AEP68830.1" FT /translation="MDSHTGELITAPQAENGVFIWEINNPLYFKITDHSQRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGRFLRVFRNEVLKYLDSLGVISINN FT VIRAVDHVLYDVLENTINVTETHDIKYKLY" FT gene complement(1268..1675) FT /gene="C2" FT CDS complement(1268..1675) FT /codon_start=1 FT /gene="C2" FT /product="TrAP" FT /note="transcriptional activator protein" FT /db_xref="GOA:G5DRC9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G5DRC9" FT /protein_id="AEP68831.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRPQPEAISNEPRHHFHSDKIQPQ FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI" FT gene complement(1584..2657) FT /gene="C1" FT CDS complement(1584..2657) FT /codon_start=1 FT /gene="C1" FT /product="Rep" FT /note="replication associated protein" FT /db_xref="GOA:G5DRD0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G5DRD0" FT /protein_id="AEP68832.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNIETPTNKKYIKVC FT RGFHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDGRTARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPNELEEWVAENVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA FT SINQGPTQDSQEETNKA" FT gene complement(2213..2506) FT /gene="C4" FT CDS complement(2213..2506) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G5DRD1" FT /protein_id="AEP68834.1" FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIQTFRQLRAQ FT QMSRPTWRKTETSLILEFSKSTEELLEEVSNLPTTHMPKHSIQAVNPRPSIY" XX SQ Sequence 2794 BP; 755 A; 540 C; 605 G; 894 T; 0 other; accggatgac cgcgcctttt ccttttatgt ggtccccacg agaccggatg accgcgcctt 60 ttccttttat gtggtcccca cgagggttac acagacgtca ctgtcaacca atcaaattgc 120 atcctcaaac gttagataag tgttcatttg tctttatata cttagtcccc aagtattttg 180 tcttgcaata tgtgggaccc acttctaaat gaatttcctg aatctgttca cggatttcgt 240 tgtatgttag ctattaaata tttgcagtcc gttgaggaaa cgtacgagcc caatacattg 300 ggccacgatt taattaggga tcttatatct gttgtaaggg cccgtgacta tgtcgaagcg 360 accaggcgat ataatcattt ccacgcccgt ctcgaaggtt cgccgaaggc tgaacttcga 420 cagcccatac agcaaccgtg ctgctgtccc cattgtccaa ggcacaaaca agcgacgatc 480 atggacgtac aggcccatgt accgaaagcc cagaatatac agaatgtatc gaagtcctga 540 tattccccgt ggatgtgaag gcccatgtaa agtccagtct tatgagcagc gggatgatat 600 taagcacact ggtgttgttc gttgtgttag tgatgttact cgtggatctg gaattactca 660 cagagttggt aagaggttct gtgttaaatc gatatatttt ttaggtaaag tctggatgga 720 tgaaaatatc aagaagcaga atcacactaa tcaggtcatg ttctttttgg tccgtgatag 780 aaggccttat ggaagcagtc caatggattt tggacaggtt tttaatatgt tcgataatga 840 gcccagtact gcaactgtga agaatgattt gcgtgatagg tttcaagtga tgaggaaatt 900 tcatgctaca gttattggtg ggccctctgg aatgaaggaa caagcattag ttaagagatt 960 ttttaaaatt aacagtcatg taacttataa tcatcaggag gcagccaagt acgagaacca 1020 tactgaaaac gccttgttat tgtatatggc atgtactcat gcctctaatc cagtgtatgc 1080 aactatgaaa atacgcatct atttctatga ttcaatatca aattaatata atttatattt 1140 tatatcatga gtttctgtta catttattgt gttttcaagt acatcataca atacatgatc 1200 cactgctctg attacattgt taatggaaat tacaccaaga ctatctaaat acttaagaac 1260 ttcatttcta aatactctta agaaacgacc agtctgaggc tgtaatgtcg tccaaattcg 1320 gaagttgaga aaacatttgt gaatccccat taccttcctg atgttgtggt tgaatcttat 1380 ctgaatggaa atgatgtcgt ggttcattag aaatggcctc tggctgtggt ctgttatctt 1440 gaaatagagg ggattgttta tctcccagat aaaaacgcca ttctctgcct gaggagcagt 1500 gatgagttcc cctgtgtgtg aatccatgat tattgcagtt gaggtggagg tagtatgagc 1560 agccacagtc taggtctaca cgcttacgcc ttattggttt cttcttggct atcttgtgtt 1620 ggaccttgat tgatacttgc gaacagtggc tcgtagaggg tgacgaaggt tgcattcttg 1680 agagcccaat ttttcaagga tatgtttttt tcttcgtcta gatattccct atatgaggag 1740 gtaggtcctg gattgcagag gaagatagtt ggaattcccc ctttaatttg aatgggcttc 1800 ccgtactttg tgttgctttg ccagtccctc tgggccccca tgaattcttt gaagtgcttt 1860 aaataatgcg ggtctacgtc atcaatgacg ttgtaccatg catcattact gtacaccttt 1920 gggcttaggt ctagatgtcc acataaataa ttatgtgggc ctagagacct ggcccacatt 1980 gttttccctg ttctgctatc accctctatg acaatactta tgggtctcca tggccgcgca 2040 gcggaagaca cgacgttctc ggcgacccac tcttcaagtt catttggaac ttgattaaaa 2100 gaagaagaaa gaaatggaga aacataaact tctaaaggag gactaaaaat cctatctaaa 2160 tttgaactta aattatgaaa ttgtaaaata tagtcctttg gggccttttc ttttagtata 2220 ttgagggcct cggatttact gcctgaattg agtgcttcgg catatgcgtc gttggcagat 2280 tgctgacctc ctctagcagt tcttccgtcg atttggaaaa ctccaaaatc aatgaagtct 2340 ccgtctttct ccacgtaggt cttgacatct gttgagctct tagctgcctg aatgtttgga 2400 tggaaatgtg ctgacctgtt tggggatacc aagtcgaaga accgttggtt cttacattgg 2460 tatttgcctt cgaattggat aagcacatgg agatgtggtt ccccattctc gtggaatcct 2520 ctgcaaactt tgatgtattt tttatttgtt ggggtttcta tgttttttaa ttgggaaagt 2580 gcttcctctt tagagagaga acaattggga tatgttagga aataattttt ggcatatatt 2640 ttaaataaac gaggcatgtt gaaatgaatc ggtgtccctc aaagctctat ggcaatcggt 2700 gtatcggtgt cttatttata cctcgacacc taaaggcaat tcaaaattca aaattcaaaa 2760 atcaaattat taaagcggtc atccgtataa tatt 2794 //