ID JN680352; SV 1; linear; genomic DNA; STD; VRL; 2612 BP. XX AC JN680352; XX DT 05-OCT-2011 (Rel. 110, Created) DT 03-SEP-2012 (Rel. 114, Last updated, Version 3) XX DE Tomato severe leaf curl virus - Huasteca, complete genome. XX KW . XX OS Tomato severe leaf curl virus - Huasteca OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2612 RX PUBMED; 22684489. RA Banuelos-Hernandez B., Mauricio-Castillo J.A., Cardenas-Conejo Y., RA Guevara-Gonzalez R.G., Arguello-Astorga G.R.; RT "A new strain of tomato severe leaf curl virus and a unique variant of RT tomato yellow leaf curl virus from Mexico"; RL Arch. Virol. 158(9):1835-1841(2012). XX RN [2] RP 1-2612 RA Banuelos-Hernandez B., Mauricio-Castillo J.A., Arguello-Astorga G.R.; RT ; RL Submitted (24-AUG-2011) to the INSDC. RL Molecular Biology, Instituto Potosino de Investigacion Cientifica y RL Tecnologica A.C., Camino a la Presa San Jose 2055, San Luis Potosi, S.L.P. RL 78216, Mexico XX DR MD5; dcbe33e03640a375f8034e9badaad9d1. XX FH Key Location/Qualifiers FH FT source 1..2612 FT /organism="Tomato severe leaf curl virus - Huasteca" FT /segment="DNA-A" FT /host="tomato" FT /mol_type="genomic DNA" FT /country="Mexico" FT /collection_date="01-Jul-2011" FT /db_xref="taxon:1086071" FT gene 205..963 FT /gene="AR1" FT CDS 205..960 FT /codon_start=1 FT /gene="AR1" FT /product="capsid protein" FT /note="coat protein; encapsidation of viral genome" FT /db_xref="GOA:G5DRC1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:G5DRC1" FT /protein_id="AEP68824.1" FT /translation="MPKRDAPWRLMSGTPKVSRSSNYVPPDGLGRKFDKSSAWANRPMY FT RKPRIYRTVRSADVPRGCEGPCKIQSFEQRHDISHTGKVMCISDVTRGNGITNRVGKRF FT CVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPSGTAMDFGHLFNMFDNEPSTATV FT KNDLRDRFQVLHRFHAKVTGGQYASNEQTLVKRFWRVNHRVTYNNQEAARYENHTENAL FT MLYMACTHASNPVYATLKIRIYFYDSVLN" FT gene complement(957..1355) FT /gene="AL3" FT CDS complement(957..1355) FT /codon_start=1 FT /gene="AL3" FT /product="REn" FT /note="replication enhancer protein" FT /db_xref="GOA:G5DRC2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G5DRC2" FT /protein_id="AEP68825.1" FT /translation="MDSRTGESITVDQAESSVFIWEVPNPLYFTILSVENPIHTNTRIY FT HIQIRFNHNLRKALHLHKAYLNYQIWTTSVRASGTNYLNRFKYLVLLYLDRLGVICINN FT VVRAVRFTTDKSYVNHVLENYSIKFKIY" FT gene complement(1102..1488) FT /gene="AL2" FT CDS complement(1102..1488) FT /codon_start=1 FT /gene="AL2" FT /product="TrAP" FT /note="transcriptional regulator of late genes; silencing FT supressor; transactivation protein" FT /db_xref="GOA:G5DRC3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G5DRC3" FT /protein_id="AEP68826.1" FT /translation="MQNSSPSTPPSIKPKHKIAKSRIRRKRIDLNCGCSFYQHIDCANH FT GFTHRGEHHCGSGREFRFYLGSTKSPLFHDTQCREPNTHKHQDIPHPNTVQPQPEEGVA FT STQSVPQLPNLDDISSSFWDELLK" FT gene complement(1445..2479) FT /gene="AL1" FT CDS complement(1445..2479) FT /codon_start=1 FT /gene="AL1" FT /product="Rep" FT /note="replication initiation protein; RCR-initiator FT protein; rolling-circle replication initiator" FT /db_xref="GOA:G5DRC4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G5DRC4" FT /protein_id="AEP68827.1" FT /translation="MPRNPNLFRLAAKNIFLTYPQCDIPKDEAIEMLQNLPWSVVKPTY FT IRVAREEHADGFPHLHCLIQLSGKSNIKDARFFDLTHPGRSANFHPNAQAAKDTNAVQN FT YITKEGDYCESGQYKVSGGTKSNKDDVYHNAVNAASAREALDIIRAGDPKTFIVSYHNV FT KANIERLFQKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRDAAARPERPISIIIEGES FT RTGKTMWARALGPHNYLSGHLDFNFRVYSNEAEYNVIDDITPQYLKMKHWKELIGAQKD FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKSFLDKEENASLKAWTLHNAKFISLNST FT LYQA" FT gene complement(2035..2400) FT /gene="AL4" FT /note="product= AL4" FT CDS complement(2035..2400) FT /codon_start=1 FT /gene="AL4" FT /product="C4" FT /db_xref="UniProtKB/TrEMBL:G5DRC5" FT /protein_id="AEP68828.1" FT /translation="MKLLKCFKICHGQSSNQRTYESPERNTQMDFRTSTVSSNSPGSPT FT SRMLDFSTSLTPEGLPIFIQTHRQPKTPTPSRITSPKKVIIVNPDNTRCLGVQNQTKTT FT FTTTPSMQLVLERLSTL" XX SQ Sequence 2612 BP; 631 A; 541 C; 637 G; 803 T; 0 other; accggatggc cgcgcttttt ttgaccggcc caagtgcttt tttgacccgg cccaattgcg 60 gaaattgcgt tgtgtcttcc tacataaagt tagccaatca gcgcacgcgt gtgtagtcta 120 attattaaca acttggcgac caagttgttt tgtggtctat aaatttgtcg ttatgtgtgt 180 ggtccagata tatagatttt gaaaatgcct aagcgggatg ccccatggcg tttaatgtcg 240 ggtaccccta aggttagtcg atcctcaaat tatgtcccgc ctgatggatt gggccgtaaa 300 tttgataagt cgtctgcctg ggctaacagg cccatgtaca gaaagcccag gatatatcgg 360 accgtaaggt ctgccgatgt tcctcgaggc tgtgaagggc cttgcaagat tcagtcgttt 420 gagcagcgtc acgatatctc tcatactggg aaggtgatgt gtatctctga tgttactcgc 480 ggtaatggca ttaccaatcg ggttggtaaa cgtttctgcg ttaagtctgt gtatatatta 540 gggaaggttt ggatggacga taacattaag ctgaagaacc acactaacag cgttatgttc 600 tggctagtta gggataggag acccagtgga acggcaatgg attttggtca cctcttcaac 660 atgttcgata atgagcctag taccgccact gtgaagaacg atcttcgaga tcgtttccaa 720 gtgctgcaca ggtttcatgc gaaggttaca ggtggtcagt atgcaagcaa tgagcagacg 780 ttggtgaagc gtttttggcg ggtcaatcat cgtgttacgt ataataatca ggaggcagct 840 cggtatgaaa accatacgga gaacgcctta atgttgtata tggcatgtac tcatgcctct 900 aaccctgtgt atgctactct taagatccgg atctattttt atgattcggt gttaaattaa 960 taaattttga attttattga ataattctca agtacatgat ttacatatga tttatctgtt 1020 gtgaagcgaa cagctctgac tacattatta atgcaaataa cacctaacct atctaaatac 1080 aataagacta aatatttaaa tctatttaag taattcgtcc cagaagctcg aactgatgtc 1140 gtccagattt ggtagttgag gtacgctttg tgtagatgca acgccttcct caggttgtgg 1200 ttgaaccgta tttggatgtg gtatatcctg gtgtttgtgt gtattgggtt ctctacactg 1260 agtatcgtga aatagagggg atttggtact tcccagataa aaacggaact ctctgcctga 1320 tccacagtga tgctctcccc tgtgcgtgaa tccatggttg gcgcaatcga tgtgctggta 1380 gaacgagcag ccacagttta ggtctatcct ctttcgacga atcctggact ttgcaatttt 1440 gtgcttaggc ttgatagagg gtggagttga gggagatgaa ttttgcattg tggagtgtcc 1500 aggcttttaa tgatgcattt tcctctttgt cgaggaaact tttatagctg gctccctctc 1560 ctggattgca gagcacgatt gatggtatcc cacctttaat ttgaactggc tttccgtatt 1620 tgcagtttga ttgccagtcc ttttgggccc caatcagctc tttccaatgc ttcatcttta 1680 aatattgcgg agtgatgtca tcaatgacgt tgtattccgc ttcatttgag taaaccctaa 1740 aattgaaatc taggtgtcca ctcaaataat tgtgtgggcc taaggcacgc gcccacattg 1800 tctttcccgt cctcgattca ccctcaatga ttatacttat aggtctctcc ggccgcgcag 1860 cggcatccct accaaaataa tcatctgccc attcttgcat ctcgtccgga acgtttgtga 1920 acgacgagag tggaaacgga ggaacccatg gttccggagc cttctgaaag agccgctcga 1980 tgttagcttt gacgttatgg tagcttacaa tgaacgtctt gggatcaccg gcccttataa 2040 tgtcgagagc ctctcgagca ctagctgcat tgacggcgtt gtggtaaacg tcgtctttgt 2100 ttgattttgt acccccagac accttgtatt gtccggattc acaataatca ccttctttgg 2160 tgatgtaatt ctggacggcg ttggtgtctt tggctgcctg tgcgtttgga tgaaaattgg 2220 cagaccttcc ggggtgagtg aggtcgaaaa atctagcatc cttgatgttg gacttcccgg 2280 agagttggat gagacagtgg aggtgcggaa atccatctgc gtgttcctct ctggcgactc 2340 gtatgtacgt tggtttgacg actgaccatg gcagattttg aagcatttca atagcttcat 2400 ctttggggat atcacactgt ggatatgtta agaaaatatt tttggcagct agacgaaata 2460 aattagggtt ccgtggcatt tttgtaaata tgagccagga caccaggggg agctctctct 2520 aaaactctat gttgctggtg tcctggtgtc ccatttatac tagaaccctc tgggggacac 2580 caagggcaaa ttcggccatc cgcaataata tt 2612 //