ID JN678806; SV 1; circular; genomic DNA; STD; VRL; 2751 BP. XX AC JN678806; XX DT 29-JAN-2012 (Rel. 111, Created) DT 29-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Cotton leaf curl Multan virus isolate Bt_09 segment A, complete sequence. XX KW . XX OS Cotton leaf curl Multan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2751 RA Kumar J., Roy J.K., Tuli R.; RT "Diversity of begomovirus infecting cotton in India"; RL Unpublished. XX RN [2] RP 1-2751 RA Kumar J., Roy J.K., Tuli R.; RT ; RL Submitted (28-AUG-2011) to the INSDC. RL Agri-Biotechnolgy, National Agri-Food Biotechnolgy Institute, India, C-127, RL Phase-8, Mohali, Punjab 160071, India XX DR MD5; 1b1ae66084563783b94e2c89d4dec0a2. XX FH Key Location/Qualifiers FH FT source 1..2751 FT /organism="Cotton leaf curl Multan virus" FT /segment="A" FT /isolate="Bt_09" FT /mol_type="genomic DNA" FT /country="India:Sri-Ganganagar" FT /collection_date="Aug-2010" FT /db_xref="taxon:223252" FT gene 118..483 FT /gene="AV2" FT CDS 118..483 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:H2E1L8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2E1L8" FT /protein_id="AEY75713.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT EAQNVSDVQKSGCSKGM" FT gene 278..1048 FT /gene="AV1" FT CDS 278..1048 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:H2E1L9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H2E1L9" FT /protein_id="AEY75714.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1051..1455) FT /gene="AC3" FT CDS complement(1051..1455) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:H2E1M0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2E1M0" FT /protein_id="AEY75715.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LSIRIQFNYNTRKALGLHKCFLTFRIWTTLHPQTGLFLRVFKTKVLKYLNNLGVISINL FT VIKAVEHVLYNLIQQTMYVDQYSDIKFKLY" FT gene complement(1148..1600) FT /gene="AC2" FT CDS complement(1148..1600) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:H2E1M1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2E1M1" FT /protein_id="AEY75716.1" FT /translation="MRSSSLSKDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGYTLDPDPVQLQH FT SESSGTAQVFSNLPNLDDLTPSDWSFLKGIQNQSPQISEQSRCNFN" FT gene complement(1497..2588) FT /gene="AC1" FT CDS complement(1497..2588) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:H2E1M2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2E1M2" FT /protein_id="AEY75717.1" FT /translation="MAPPKRFKIQAKNYLITYPQCSLTKEEALSQIQAINTPSNKKYIK FT LCRELHQNGEPHLHVLIQFEGKYQCTNKRFFDLVSPTRTAHFHPNIQGAKSSSDVKAYI FT DKDGDTLGWGEFQIDGRSARGGRQTANDAYAAALNAGNKSEALRVIKELAPKDFVLQFH FT NLNANLDRIFQEPPAPYISPFSPSSFDQVPEELEVWAIDNVVDAAARPIRPRSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEERNTALTNWAVKNAIFITLEGPL FT YSGTNQSTAQGSEETQQEEESRS" FT gene complement(2129..2431) FT /gene="AC4" FT CDS complement(2129..2431) FT /codon_start=1 FT /gene="AC4" FT /product="regulatory protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H2E1M3" FT /protein_id="AEY75718.1" FT /translation="MGNLIFTCSSSSRGSTNARIKDSSTWYPQPGQHISIRTFRELNQA FT QMSRPTSTRTGTLSGGESFRSMEDQQEEDDRQPTTLTPQHLTQAISQRLLESLRN" XX SQ Sequence 2751 BP; 693 A; 560 C; 660 G; 838 T; 0 other; accggatggc cgcgcgattt ttttttgtgg gcccccgatt tatgagattg ctccctcaaa 60 gctaaataac gctcccgcac actataagta cttgcgcact aagtttcaaa ttcaaacatg 120 tgggatccac tgttaaacga attccctgat acggttcacg ggtttcggtg tatgctttct 180 gtgaaatatt tgcaactttt gtcgcaggat tattcaccgg atacgcttgg gtacgagtta 240 atacgggatt taatttgtat tttacgctcc cgtaattatg tcgaagcgag ctgccgatat 300 cgtcatttct acgcccgcgt cgaaagtacg ccggcgtctg aacttcggca gcccatacac 360 cagccgtgct gctgccccca ttgtccgcgt cacaaaacaa caggcatgga caaacaggcc 420 tatgaacagg aagcccagaa tgtatcggat gtacagaagt ccggatgttc caaggggatg 480 tgagggtccc tgtaaggtac agtcgtttga atctcgacac gatgttgtcc atattggtaa 540 ggtaatgtgt atttctgatg ttacgcgtgg agtcggtttg acccatcgta taggtaagcg 600 tttttgtgtc aagtcagttt atgttttagg taagatatgg atggacgaga acatcaagac 660 caagaaccat acgaattcgg tgatgttttt ccttgttcgt gatcgacgac cgacagataa 720 accacaagat tttggtgaag tatttaatat gtttgataac gagcccagta cggccaccgt 780 taagaacatg catagggatc ggtaccaggt gttgaggaaa tggcatgcaa ccgttactgg 840 tggtcaatat gcatcgaagg aacaggcgtt ggttaagaag tttatcaggg ttaacaatta 900 tgttgtttac aaccagcagg aggcaggaaa atacgagaat cacaccgaga atgcattgat 960 gctttatatg gcttgtaccc atgctagtaa cccagtttat gctacgctta agattcggat 1020 atatttttat gactctgtaa cgaattgata ttaataaagt ttgaatttta tatctgaata 1080 ttgatctaca tacatagttt gttggattaa attgtacaat acatgttcta cagctttaat 1140 aactaaatta attgaaatta caccgagatt gttcagatat ttgaggactt tggttttgaa 1200 tacccttaag aaaagaccag tctgagggtg taaggtcgtc cagattcgga aggttagaaa 1260 acacttgtgc agtcccagag ctttccgagt gttgtagttg aactggatcc ggatcgagag 1320 tatatccata ttcgtcgtga atggacggtt gacgtggctg atgatcttga aatagagggg 1380 atttggaacc tcccagatat atgcgccatt ccctgcttga gctgcagtga tgggttcccc 1440 tgtgcgtgaa tccatggttg tggcagttga ttgacagata ataagaacac ccgcattcaa 1500 gatctactct cctcctcctg ttgcgtctct tcgcttccct gtgctgtact ttgattggta 1560 cctgagtaca ggggtccttc gagagtgatg aagatcgcat tctttactgc ccagtttgtt 1620 agtgcggtgt tcctttcctc gtctaggaat tctttataac tgctgttggg accaggattg 1680 cagaggaaga ttgttggtat cccgccttta atttgaactg gcttcccgta ctttgtgttg 1740 gattgccagt ccctttgggc ccccatgaac tctttaaagt gtttgaggaa atgcgggtcg 1800 acgtcatcaa tgacgttgta ccaggcgtcg ttactgtaga ccttgggact caggtccaga 1860 tgtccacaca aatagttatg tggtcccaat gacctagccc acatcgtctt ccccgtacga 1920 ctatctccct caattactat actccgaggt ctaatgggcc gcgcagcggc atcgacaacg 1980 ttgtcgatag cccaaacttc aagttcttct ggaacttgat cgaaagaaga aggagaaaaa 2040 ggagaaatat agggagccgg tggctcctga aagattctgt ctagatttgc atttaaatta 2100 tgaaattgta gtacaaaatc tttaggagct agttccttaa tgactctaag agcctctgac 2160 ttattgcctg cgttaagtgc tgcggcgtaa gcgtcgttgg ctgtctgtcg tcctcctctt 2220 gctgatcttc catcgatctg aaactctccc cacccgagag tgtccccgtc cttgtcgatg 2280 taggccttga catctgagct tgatttagct ccctgaatgt tcggatggaa atgtgctgtc 2340 ctggttgggg ataccaggtc gaagaatctt ttattcgtgc attggtactt cccctcgaac 2400 tggatgagca cgtgaagatg aggttcccca ttttggtgta actctctgca gagtttgatg 2460 tattttttat tcgagggtgt gttgatggct tgaatttggg aaagtgcttc ctctttagtg 2520 agtgagcact gtggataagt gatcaaataa tttttggctt gtattttaaa acgtttgggg 2580 ggagccattg actttggtca attagagaca actgattggc ttttactctg ggaattggag 2640 actggataca atttatagtg tctccaaatg gcatattctg taaataacta gaagttcgtt 2700 tgaaattcaa attccccttt gggctccaaa agcggccatc cgtataatat t 2751 //