ID JN678804; SV 1; circular; genomic DNA; STD; VRL; 2752 BP. XX AC JN678804; XX DT 29-JAN-2012 (Rel. 111, Created) DT 29-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Cotton leaf curl Multan virus isolate CLR_11 segment A, complete sequence. XX KW . XX OS Cotton leaf curl Multan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2752 RA Kumar J., Roy J.K., Tuli R.; RT "Diversity of begomovirus infecting cotton in India"; RL Unpublished. XX RN [2] RP 1-2752 RA Kumar J., Roy J.K., Tuli R.; RT ; RL Submitted (28-AUG-2011) to the INSDC. RL Agri-Biotechnolgy, National Agri-Food Biotechnolgy Institute, India, C-127, RL Phase-8, Mohali, Punjab 160071, India XX DR MD5; 5a722f99033b0b1e69cb8df7c3f8a824. DR EuropePMC; PMC4872795; 26963635. DR EuropePMC; PMC5727119; 29234082. DR EuropePMC; PMC6451280; 30954067. XX FH Key Location/Qualifiers FH FT source 1..2752 FT /organism="Cotton leaf curl Multan virus" FT /segment="A" FT /isolate="CLR_11" FT /mol_type="genomic DNA" FT /country="India:Sri-Ganganagar" FT /collection_date="Aug-2010" FT /db_xref="taxon:223252" FT gene 173..487 FT /gene="AV2" FT CDS 173..487 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:H2E1K7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2E1K7" FT /protein_id="AEY75702.1" FT /translation="MLFCEIFCNFCRGIIHRDTLGYELIRDLICILRSRNYVEASCRYR FT HFYARVESTPASELRQPIHQPCCCPHCPRHKTTSMDKQAYEQEAQNVSDVQKSGCSKGL FT " FT gene 282..1052 FT /gene="AV1" FT CDS 282..1052 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:B9TVF0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:B9TVF0" FT /protein_id="AEY75703.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDIEP FT STATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1055..1456) FT /gene="AC3" FT CDS complement(1055..1456) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:H2E1K9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2E1K9" FT /protein_id="AEY75704.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTMNMDI FT LTIRILNSSLGKLWDCHKCFLPFRIWTTLQPQTGPFLWVFKTQVLKYLNNLAVISINLV FT IKAVEHVLYNVIQQTMYVDQYSEIKFKLH" FT gene complement(1152..1601) FT /gene="AC2" FT CDS complement(1152..1601) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:H2E1L0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2E1L0" FT /protein_id="AEY75705.1" FT /translation="MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPQFKPR FT KALGLPQVFSTFPNLDDPTASDWSFLMGIQNPSPQISEQSRCNFN" FT gene complement(1498..2589) FT /gene="AC1" FT CDS complement(1498..2589) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:H2E1L1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2E1L1" FT /protein_id="AEY75706.1" FT /translation="MAPPKRFKIQARNYFITYPQCSLTKEEALSQIQAINTPSNKKYIK FT LCRELDEDGSPHLHVLIQFEGKFVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKAYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH FT NLNANLDRIFQEPPAPYISPFSPSSFDQVPEELEVWAIDNVVDAAARPLRPRSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWAVKNAIFITLDRPL FT YSGTNQSTAQGSEEAQQEEESRS" FT gene complement(2130..2432) FT /gene="AC4" FT CDS complement(2130..2432) FT /codon_start=1 FT /gene="AC4" FT /product="regulatory protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H2E1L2" FT /protein_id="AEY75707.1" FT /translation="MGALISMCSSNSRANSSARITDSSTWYPQPGQHISIRTFRELNQA FT QMSRPTSTKTGTLSSGESFRSMEDQQEEDSRQPTTLTPQHLTQAVSQRLLESLRN" XX SQ Sequence 2752 BP; 701 A; 550 C; 656 G; 845 T; 0 other; accggatggc cgcgcgattt tttttttgag ggcccccgat ttatgagatt gctccctcaa 60 agctaaataa cgctcccgca cactataagt acttgcgcac taagtttcaa attaaacatg 120 tggggatcca cttttatacg aattccctga tacagttcac gggtttcggt gtatgctttt 180 ctgtgaaata ttttgcaact tttgtcgcgg gattattcac cgggatacgc ttgggtacga 240 gttaatacgg gatttaattt gtattttacg ctcccgtaat tatgtcgaag cgagctgccg 300 atatcgtcat ttctacgccc gcgtcgaaag tacgccggcg tctgaacttc ggcagcccat 360 acaccagccg tgctgctgcc cccattgtcc gcgtcacaaa acaacaagca tggacaaaca 420 ggcctatgaa caggaagccc agaatgtatc ggatgtacag aagtccggat gttccaaagg 480 gttgtgaagg cccatgtaag gtacaatctt ttgagtcgag acatgatgtc gttcatattg 540 gtaaggtaat gtgtatttct gatgttactc gtggtgtcgg tttgacccat cgtattggta 600 aacgtttttg tgtcaagtca gtttatgttt taggtaagat atggatggat gaaaatataa 660 agaccaagaa tcacacgaat tcggtgatgt tctttttagt ccgcgatcga cgtcctgttg 720 acaaacctca ggactttggt gaggtattta atatgtttga cattgaaccc agtacagcga 780 ctgtgaagaa tagtcatagg gaccgttacc aggtgttgag gaaatggcat gcaaccgtta 840 cgggtggtca atatgcatcg aaggaacagg ctttggtgaa gaagtttatc agagttaaca 900 attatgttgt ttacaatcaa caggaagcag gaaaatacga gaatcataca gaaaatgcgt 960 taatgcttta tatggcttgt actcacgcta gcaaccctgt ttatgctacg ttgaagatta 1020 ggatatattt ttatgactct gtaacgaatt gatattaatg aagtttgaat tttatttctg 1080 aatattgatc tacatacata gtttgttgga ttacattgta caatacatgt tctacagctt 1140 taataactaa attaattgaa attacagcga gattgttcag atatttgagg acttgggttt 1200 tgaataccca taagaaagga ccagtctgag gctgtagggt cgtccagatt cggaaaggta 1260 gaaaacactt gtggcagtcc cagagctttc cgaggcttga attgaggatc ctgatcgtga 1320 gtatgtccat attcatcgtg aatggacggt tgacgtggct gatgatcttg aaataaaggg 1380 gatttggaac ctcccagata tatgcgccat tccctgcttg agctgcagtg atgggttccc 1440 ctgtgcgtga atccatggtt gtggcagttg attgacagat aataagaaca cccgcattca 1500 agatctactc tcctcctcct gttgcgcctc ttcgcttccc tgtgctgtac tttgattggt 1560 acctgagtac aggggtctat caagtgtgat gaagatcgca ttctttactg cccagttctt 1620 tagtgcggtg ttcttttcct cgtctaggaa ttctttataa ctgctgtttg gaccaggatt 1680 gcagaggaag attgttggta tcccgccttt aatttgaact ggcttcccgt actttgtgtt 1740 ggattgccag tccctttggg cccccatgaa ctctttaaag tgtttgagga aatgcgggtc 1800 gacgtcatca atgacgttgt accaggcgtc gttactgtaa accttgggac tcaggtccag 1860 atgtccacac aaatagttat gtggtcccaa tgacctagcc cacatcgtct tccccgtacg 1920 actatctccc tcaattacta tactccgagg tctaaggggc cgcgcagcgg catcgacaac 1980 gttgtcgata gcccaaactt caagttcttc tggaacttga tcgaaagaag aaggagaaaa 2040 aggagaaata tagggagccg gtggctcctg aaagattctg tctagatttg catttaaatt 2100 atgaaattgt agtacaaaat ctttaggagc tagttcctta atgactctaa gagcctctga 2160 cttactgcct gcgttaagtg ctgcggcgta agcgtcgttg gctgtctgct gtcctcctct 2220 tgctgatctt ccatcgatct gaaactctcc ccactcgaga gtgtccccgt ctttgtcgat 2280 gtaggccttg acatctgagc ttgatttagc tccctgaatg ttcggatgga aatgtgctga 2340 cctggttggg gataccaggt cgaagaatct gttattcgtg cagacgaatt tgccctcgaa 2400 ttggatgagc acatggagat gagggctccc atcttcgtct aactctctgc agagtttgat 2460 gtatttttta ttcgagggtg tgttgatggc ttgaatttgg gaaagtgctt cctctttagt 2520 gagtgagcac tgtggataag tgatgaaata atttctggct tgtattttaa aacgtttggg 2580 gggagccatt gactttggtc aattagagac aactgatggg cttttactct gggaattgga 2640 gactggatac aatttatagt gtctccaaat ggcatattct gtaaataact agaagttcgt 2700 ttgaaattca aattcccttt tgggctccaa aagcggccat ccgtataata tt 2752 //