ID JN678802; SV 1; circular; genomic DNA; STD; VRL; 2752 BP. XX AC JN678802; XX DT 29-JAN-2012 (Rel. 111, Created) DT 29-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Cotton leaf curl Burewala virus isolate CLR_02 segment A, complete DE sequence. XX KW . XX OS Cotton leaf curl Burewala virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2752 RA Kumar J., Roy J.K., Tuli R.; RT "Diversity of begomovirus infecting cotton in India"; RL Unpublished. XX RN [2] RP 1-2752 RA Kumar J., Roy J.K., Tuli R.; RT ; RL Submitted (28-AUG-2011) to the INSDC. RL Agri-Biotechnolgy, National Agri-Food Biotechnolgy Institute, India, C-127, RL Phase-8, Mohali, Punjab 160071, India XX DR MD5; b1bf489a063044c681156c89e238350c. DR EuropePMC; PMC4054350; 24719407. XX FH Key Location/Qualifiers FH FT source 1..2752 FT /organism="Cotton leaf curl Burewala virus" FT /segment="A" FT /host="cotton" FT /isolate="CLR_02" FT /mol_type="genomic DNA" FT /country="India:Sri-Ganganagar" FT /collection_date="Aug-2010" FT /db_xref="taxon:620894" FT gene 119..481 FT /gene="AV2" FT CDS 119..481 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:H2E1J5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2E1J5" FT /protein_id="AEY75695.1" FT /translation="MRLKDPLLNEFPDTVHGLRCMLAVKYLQLVEKTYSPDTLGYDLIR FT DLILVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAH FT EQKAQDVQDVQKSRCS" FT gene 285..1055 FT /gene="AV1" FT CDS 285..1055 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:D3HIR0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D3HIR0" FT /protein_id="AEY75690.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1052..1456) FT /gene="AC3" FT CDS complement(1052..1456) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:D3HIR1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D3HIR1" FT /protein_id="AEY75691.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVLKYLNNLGIVSINN FT VVRAVDHVLWNVLQHVVFVDQSSSIKFNIY" FT gene complement(1197..1601) FT /gene="AC2" FT CDS complement(1197..1601) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:E3ULY0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E3ULY0" FT /protein_id="AEY75692.1" FT /translation="MQSSSLSKDHCTQLPIKVQHREAKRRNRRRIVDLELGCSLYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGSSKSPLFQDHQPRQPSIHDEYGYTHDQDPVQSQP FT EESVGDTQMFHSFPNLDDLTASDWSFLKGL" FT gene complement(1620..2675) FT /gene="AC1" FT CDS complement(1620..2675) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:H2E1J9" FT /db_xref="InterPro:IPR002488" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2E1J9" FT /protein_id="AEY75693.1" FT /translation="MPFGDTINCIQSPIPRVKAHQLSLIDQSQWLPPNVLKYKPKTISS FT LIHSAHSLKRKHFPKFKPSTHPRIKNTSNSAESYTKMGALISMCSSSSRANSSARITDS FT STWYPQPGQHISIRTFRELNQAQMSAYIDKDGDTLEWGEFQIDGRSARGGQQTAHDAYA FT AALNAGSKSEALRVIKELAPKDFVLQFHNLNANLDRIFQEPPAPYISPFSPSSFDQVPE FT ELEVWAIDNVVDAAARPLRPRSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSN FT DAWYNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFSCAILVRTAVI FT MNSSTRKKTQH" FT gene complement(2176..2589) FT /gene="AC4" FT CDS complement(2176..2589) FT /codon_start=1 FT /gene="AC4" FT /product="truncated regulatory protein" FT /db_xref="GOA:H2E1K0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="UniProtKB/TrEMBL:H2E1K0" FT /protein_id="AEY75694.1" FT /translation="MAPPKRFKVQAKNYFITYPQCSLTKEEALSQIQAINTPSNKKYIK FT LCRELHEDGSPHLHVLIQFEGKFVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVGLHR FT QGRGHSRVGRVSDRWKISKRRTADSPRRLRRST" XX SQ Sequence 2752 BP; 718 A; 544 C; 650 G; 840 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cctaccatta actcttgtcg gccaatcata 60 tgacgcgctc aaagcttaaa taattctccc gcgtattata agtacttcgt tgctaagtat 120 gcgtttgaag gatccactgt taaatgagtt ccccgacacc gttcacggtc ttaggtgtat 180 gttagcagtt aaatatttgc agttagtaga gaaaacttac tctcctgata cattgggtta 240 cgatttgata agggatttaa tcctggtaat aagggctagg aattatgtcg aagcgaccag 300 cagatataat catttccacg cccgcttcga aggtacgccg ccgtctcaac ttcgacagcc 360 catatgtgag ccgtgctgct gcccccattg tccgcgtcac caaagcaaaa gcatgggcga 420 acaggcccat gaacagaaag cccaggatgt acaggatgta cagaagtcca gatgttccta 480 gaggatgtga aggtccatgt aaggttcagt cgtttgagtc cagacatgat attcagcata 540 taggtaaagt aatgtgtgtt agtgatgtta ctcgtggtac tgggctgacc catagagttg 600 gtaagagatt ttgtgttaag tctgtttatg tgttgggtaa gatctggatg gatgagaaca 660 ttaagacgaa gaatcacacg aatagtgtga tgtttttctt ggttagagat cgtagacctg 720 ttgataaacc tcaagatttt ggagaggtat ttaatatgtt tgataatgag cccagtacgg 780 cgactgtgaa gaatgttcat cgtgataggt atcaagttct gcgcaaatgg tatgcaactg 840 tcaccggtgg acaatacgct tcaaaggaac aagctctcgt gaagaaattt attagagtta 900 ataattatgt tgtgtataac cagcaggaag ctggcaagta tgagaatcat tctgagaatg 960 ctttaatgtt gtatatggcg tgtactcacg cctctaaccc agtgtatgct accttgaaga 1020 tacggatcta cttctatgat tccgtgacaa attaataaat attgaatttt attgaagatg 1080 attggtctac aaatacaaca tgttgtaata cattccataa tacatgatca actgctctaa 1140 ctacattatt aatactgaca attcctaagt tatttaaata ttttagcact tgagtcctaa 1200 agacccttaa gaaacgacca gtcggaggct gtgaggtcat ccagattcgg aaagctatga 1260 aacatttgtg tatccccaac gctttcctca ggttgtgatt gaactggatc ctgatcgtga 1320 gtatatccat attcgtcgtg aatggacggt tgacgtggct gatgatcttg aaatagaggg 1380 gatttggaac ttcccagata tatgcgccat tccctgcttg agctgcagtg atgggttccc 1440 ctgtgcgtga atccatggtt gtggcagttg attgacagat acaaagaaca ccctaattca 1500 agatctacta tcctcctcct gttgcgtctc ttcgcttccc tgtgctgtac tttgattgga 1560 agctgagtac agtggtcctt cgagagtgat gaagattgca ttttttaagg tccaattctt 1620 taatgctgtg tttttttcct cgttgaggaa ttcattataa ctgctgttcg gaccaggatt 1680 gcacaggaaa agattgtcgg tatcccgcct ttaatttgaa ctggctttcc gtattttgtg 1740 ttggactgcc agtctctttg ggcccccatg aactctttaa agtgtttgag gaaatgcggg 1800 tcgacgtcat caatgacgtt gtaccaggcg tcgttactgt atactttggg actcaggtcc 1860 agatgtccgc acaaatagtt atgtggtccc aatgatctag cccacatcgt cttccccgtt 1920 cgactatctc cctcaattac tatactccga ggtctaaggg gccgcgcagc ggcatcgaca 1980 acgttatcga tggcccaaac ttcaagttct tctggaactt gatcgaaaga agaaggagaa 2040 aaaggagaaa tatagggagc cggtggctcc tgaaagattc tatctagatt tgcatttaaa 2100 ttatgaaatt gtagtacaaa atctttagga gctagttcct taatgactct aagagcctct 2160 gacttactgc ctgcgttaag tgctgcggcg taagcgtcgt gggctgtctg ctgtcctcct 2220 cttgctgatc ttccatctat ctgaaactct ccccactcga gagtgtcccc gtccttgtcg 2280 atgtaggccg acatctgagc ttgatttagc tccctgaatg ttcggatgga aatgtgctga 2340 cctggttggg gataccaggt cgaagaatct gttattcgtg cagacgaatt tgccctcgaa 2400 ctggatgagc acatggagat gagggctccc atcttcgtgt aactctctgc agagtttgat 2460 gtatttttta ttcgagggtg tgttgatggc ttgaatttgg gaaagtgctt cctctttagt 2520 gagtgagcac tgtggataag tgatgaaata gtttttggct tgtactttaa aacgtttggg 2580 gggagccatt gactttggtc aattagagac aactgatggg cttttactct gggaattgga 2640 gactggatac aatttatagt gtctccaaat ggcatattct gtaaataact agaagttcgt 2700 ttgaaattca aattcccctt tggggtccaa aagcggccat ccgtataata tt 2752 //