ID   JN676055; SV 1; linear; genomic DNA; STD; VRL; 1186 BP.
XX
AC   JN676055;
XX
DT   21-FEB-2012 (Rel. 111, Created)
DT   21-FEB-2012 (Rel. 111, Last updated, Version 1)
XX
DE   Tobacco curly shoot virus coat protein (AV1) gene, partial cds; replication
DE   enhancer protein (AC3) and transcription activator protein (AC2) genes,
DE   complete cds; and replication associated protein (AC1) gene, partial cds.
XX
KW   .
XX
OS   Tobacco curly shoot virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1186
RA   Saha A., Saha B., Saha D.;
RT   "Molecular detection of begomoviruses infecting tomato in sub-Himalayan
RT   West Bengal, India";
RL   Unpublished.
XX
RN   [2]
RP   1-1186
RA   Saha B., Saha A., Saha D.;
RT   ;
RL   Submitted (13-SEP-2011) to the INSDC.
RL   Dept. of Botany, University of North Bengal, Rajarammohanpur, Siliguri,
RL   West Bengal 734013, India
XX
DR   MD5; e0f879af26ddf936831df50703a8e92f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1186
FT                   /organism="Tobacco curly shoot virus"
FT                   /segment="DNA-A"
FT                   /host="Lycopersicon esculentum L."
FT                   /isolate="SILIGURI-1"
FT                   /mol_type="genomic DNA"
FT                   /country="India:West Bengal, Siliguri"
FT                   /collected_by="Bikram Saha"
FT                   /collection_date="Dec-2009"
FT                   /clone="1"
FT                   /db_xref="taxon:180526"
FT   gene            <1..420
FT                   /gene="AV1"
FT   CDS             <1..417
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:H6UQ97"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:H6UQ97"
FT                   /protein_id="AFB17996.1"
FT                   /translation="KIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT                   STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT                   SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT   gene            complement(414..818)
FT                   /gene="AC3"
FT   CDS             complement(414..818)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:E5GED4"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:E5GED4"
FT                   /protein_id="AFB17997.1"
FT                   /translation="MDSRTGELITAAQAENGVYIWEIQNPLYFKITEHQNRPFLMKEDI
FT                   ITIQIQFNYNLRKALGVHKCFLVYRIWMTSQPQTGRFLRVFKTQVFKYLNNLGIISINN
FT                   VIRAVDRVLWDVLEHIVYVDQSYSIKFNIY"
FT   gene            complement(559..963)
FT                   /gene="AC2"
FT   CDS             complement(559..963)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcription activator protein"
FT                   /db_xref="GOA:H6UQ99"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:H6UQ99"
FT                   /protein_id="AFB17998.1"
FT                   /translation="MRSSSPSKAHSTLVPIKVKHRLAKKGNRRRRVDLPCGCSYFIALA
FT                   CHDHGFTHRGTHHCSSSREWRVYLGDSKSPLFQDNRAPEPSISHERRHNHNPNTVQLQP
FT                   AESSGSAQVFSSLPNLDDFTASDWSFLKGL"
FT   gene            complement(866..>1186)
FT                   /gene="AC1"
FT   CDS             complement(866..>1186)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication associated protein"
FT                   /db_xref="UniProtKB/TrEMBL:H6UQA0"
FT                   /protein_id="AFB17999.1"
FT                   /translation="WLNVIDDVNPHYLKLFKEFVGAQKDRQSNTKYGKPVQIKGGIPTI
FT                   FLCNPGPNSSYKEFLDEEKNTALKNWSLKNAIFVTLESPLYSGSNQSEAQASQKGEQTS
FT                   SC"
XX
SQ   Sequence 1186 BP; 343 A; 206 C; 256 G; 381 T; 0 other;
     aagatctgga tggatgaaaa tattaagacc aagaatcaca ctaacagtgt tatgtttttt        60
     ttagttaggg atcgtaggcc tgtggataaa cctcaagatt ttggagaggt ttttaacatg       120
     tttgataatg agcccagtac ggctactgtg aagaatgttc atcgtgatag gtatcaagtg       180
     cttcgcaaat ggcatgcaac tgttacgggt ggacaatatg cgtcgaagga acaagccctt       240
     gtgaagaaat ttgttagggt taataattat gttgtgtata accagcaaga agctggcaag       300
     tatgaaaatc attctgagaa tgcgttaatg ttgtatatgg catgtactca tgcatctaac       360
     ccagtgtatg ctactttgaa gatacggatc tatttctatg attccgtaac aaattaataa       420
     atattaaatt ttattgaata agattggtct acatatacaa tgtgttctaa tacatcccat       480
     aatacacgat caactgcacg aattacatta ttaatactga taattcctaa attatttaaa       540
     tatttaaaaa cttgagtctt aaagaccctt aagaaacgac cagtctgagg ctgtgaagtc       600
     atccagattc ggtagactag aaaacacttg tgcactccca gagctttccg caggttgtag       660
     ttgaactgta tttggattgt gattatgtct tctttcatga gaaatggacg gttctggtgc       720
     tctgttatct tgaaataaag gggattttga atctcccaga tatacacgcc attctctgct       780
     tgagctgcag tgatgagttc ccctgtgcgt gaatccatga tcgtgacagg ctagtgctat       840
     gaaatatgaa catccacaag ggagatcaac acgacgacgt ctgttcccct ttttggctag       900
     cctgtgcttc actttgattg gaaccagagt agagtgggct ttcgagggtg acgaagatcg       960
     cattctttaa agaccaattt ttaagtgcgg tatttttctc ttcatccaag aattctttat      1020
     agctagagtt gggtcctgga ttgcagagaa agatagtggg aattccgcct ttaatttgaa      1080
     ctggctttcc gtactttgta tttgattgcc ggtctttttg ggcccccacg aattctttaa      1140
     agagctttag gtagtgcgga tttacgtcat caatgacgtt taacca                     1186
//