ID JN676053; SV 1; linear; genomic DNA; STD; VRL; 2762 BP. XX AC JN676053; XX DT 21-FEB-2012 (Rel. 111, Created) DT 21-FEB-2012 (Rel. 111, Last updated, Version 1) XX DE Tomato leaf curl Ranchi virus isolate GUW-2, complete genome. XX KW . XX OS Tomato leaf curl Ranchi virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2762 RA Saha A., Saha B., Saha D.; RT "Complete nucleotide sequence of tomato leaf curl virus"; RL Unpublished. XX RN [2] RP 1-2762 RA Saha B., Saha A., Saha D.; RT ; RL Submitted (13-SEP-2011) to the INSDC. RL Dept. of Botany, University of North Bengal, Rajarammohanpur, Siliguri, RL West Bengal 734013, India XX DR MD5; 83eeb299a5d082a7f284d3886f9f66de. XX FH Key Location/Qualifiers FH FT source 1..2762 FT /organism="Tomato leaf curl Ranchi virus" FT /segment="DNA-A" FT /host="Lycopersicon esculentum L." FT /isolate="GUW-2" FT /mol_type="genomic DNA" FT /country="India:Guwahati" FT /collected_by="A. Saha" FT /collection_date="Dec-2011" FT /db_xref="taxon:938276" FT gene 152..509 FT /gene="AV2" FT CDS 152..508 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:H6UQ89" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H6UQ89" FT /protein_id="AFB17988.1" FT /translation="MWDPLVNEFPESVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCA" FT gene complement(303..977) FT /gene="AC5" FT CDS complement(303..977) FT /codon_start=1 FT /gene="AC5" FT /product="Ac5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:H6UQ90" FT /protein_id="AFB17989.1" FT /translation="MILILASFLLVIHNIIINPNKLLHESLFLRRILSTSNGCMPFPKH FT LIPVTMNILHSSRTGLIIKHVKHFSKILRFIHRPTIPNKKKNHTIGVILRLNIFVHPYL FT SENIHRLNTKPFTHSMGQPSPTSNITDTHDFTYMLNVMSRLKRLHLTWAFTASRHIWTS FT VHPVHPGLSVHGPVRPCSCFGDADNGGSSTARIWAVEVETAAYLRSGRGNDYICWSLRH FT NF" FT gene 312..1085 FT /gene="AV1" FT CDS 312..1082 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:H6UQ91" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H6UQ91" FT /protein_id="AFB17990.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVIFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1079..1483) FT /gene="AC3" FT CDS complement(1079..1483) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:H6UQ92" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H6UQ92" FT /protein_id="AFB17991.1" FT /translation="MDSRTGEVITAAQAENGVYIWEIQNPLYFKILEHQNRPFLMQEDI FT MTIRIQFNYNLRKALGVHKCFLVFRIWMTSQPPTGQFLRVFKTQVFKYLDNLGIISINN FT VIRAVDHVLWNRLEHIVYVDQSYSIKFNIY" FT gene complement(1224..1628) FT /gene="AC2" FT CDS complement(1224..1628) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:H6UQ93" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H6UQ93" FT /protein_id="AFB17992.1" FT /translation="MRSSSPSKAHSTQVPIKVKHRLAKKGNRRRRVDLPCGCSYFIALA FT CHDHGFTHRGSHHCSSSREWRVYLGDSKSPLFQDLGAPEPSISDARGHNDNPNTVQLQP FT AESSGSAQVFSSLPNLDDFTASDWSILKGL" FT gene complement(1531..2616) FT /gene="AC1" FT CDS complement(1531..2616) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:H6UQ94" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H6UQ94" FT /protein_id="AFB17993.1" FT /translation="MAAPNRFKINAKNYFLTYPKCSLAKEEALSQLLNIQTPTSKKFIR FT ICRELHEDGTPHLHVLIQFEGKFQCRNNRFFDLTSPTRSAHFHPNIQGAKSSTDVKTYM FT EKDGDVLDHGVFQVDGRSARGGCQSANDAYAEAINSGSKAEALNILKEKAPKDYVLQFH FT NLNSNLDRIFTPPMEVYVSPFSSSSFDQVPEELEEWAAENVVSAAARPLRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWALKNAIFVTLESPL FT YSGSNQSEAQASQEGEQTSSC" FT gene complement(2166..2459) FT /gene="AC4" FT CDS complement(2166..2459) FT /codon_start=1 FT /gene="AC4" FT /product="suppressor of RNAi and pathogenicity determinant FT protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H6UQ95" FT /protein_id="AFB17994.1" FT /translation="MGLLTCMCSSNSKVNSSAETIDSSTSHPQPGQHISIRTFRELRAL FT QMSKPTWRKTETCLIMEFSKSMEDQLEEVANLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2762 BP; 762 A; 547 C; 604 G; 849 T; 0 other; taatattacc ggatggccgc gattttttta aaggggtccc cgcagcacac taattgacaa 60 agacctgtgg atcattgaaa atcgtccctc aaagcttaat tgtttcctgg tcccctctat 120 aaacttggtc cccaagttcc cacattacaa aatgtgggat cctttagtga acgagtttcc 180 cgaatccgtt cacggtttta gatgtatgtt agcagttaaa tatctgcagt tagtagagaa 240 aacttattct cccgacacct tagggtacga tttaattagg gatttaattt cagttattag 300 ggctagaaat tatgtcgaag cgaccagcag atataatcat ttccacgccc gcttcgaagg 360 tacgccgccg tctcaacttc gacagcccat atgcgagccg tgctgctgcc cccattgtcc 420 gcgtcaccaa agcaagagca tgggcgaaca ggcccatgaa cagaaagccc aggatgtaca 480 ggatgtacag aagtccagat gtgcctagag gctgtgaagg cccatgtaag gtgcagtctt 540 ttgagtctag acatgacatt cagcatatag gtaaagtcat gtgtgtcagt gatgttactc 600 gtgggactgg gctgacccat cgagtgggta aaaggttttg tgttaagtct gtgtatgttc 660 tcggaaagat atggatggac gaaaatatta agacgaagaa tcacaccaat agtgtgattt 720 tttttcttgt tagggatcgt aggcctgtgg ataaacctca agattttgga gaagtgttta 780 acatgtttga taatgagccc agtacggcta ctgtgaagaa tgttcatcgt gacaggtatc 840 aagtgcttcg gaaatggcat gcaaccgtta ctggtggaca gtatgcgtct aaggaacaag 900 ctctcgtgaa gaagtttgtt agggttaata attatgttgt gtataaccag caagaagctg 960 gcaagtatga gaatcattct gagaatgcgt taatgttgta tatggcatgt actcatgcct 1020 ctaacccagt gtatgctact ttgaagatac ggatctattt ctatgattcc gtaacaaatt 1080 aataaatatt gaattttatt gaataagatt ggtctacata tacaatatgt tctaatctat 1140 tccataatac atgatcaact gcacgaatta cattattaat actgataatt cctaaattat 1200 ctaaatattt aaaaacttga gtcttaaaga cccttaagaa ttgaccagtc ggaggctgtg 1260 aagtcatcca gattcggaag actagaaaac acttgtgcac tcccagagct ttccgcaggt 1320 tgtaattgaa ctgtattcgg attgtcatta tgtcctcttg catcagaaat ggacggttct 1380 ggtgctccaa gatcttgaaa taaaggggat tttgaatctc ccagatatac acgccattct 1440 ctgcttgagc tgcagtgatg acttcccctg tgcgtgaatc catgatcgtg acaggctagt 1500 gctatgaaat atgaacatcc acaagggaga tcaacacgac gacgtctgtt ccccttcttg 1560 gctagcctgt gcttcacttt gattggaacc tgagtagagt gggctttcga gggtgacgaa 1620 gatcgcattc tttaaagccc aatttttaag tgctgtattt ttctcttcat ccaagaattc 1680 tttatagcta gagttgggtc ctggattgca gagaaagata gtgggtattc cgcctttaat 1740 ttgaactggc tttccgtact ttgtattgct ttgccagtct ctttgggccc ccatgaattc 1800 tttaaagtgc tttaggtagt gcggatctac gtcatcaatg acgttatacc aagcatcatt 1860 attgtacact ttagggctta gatctaaatg accacacaag taattatgtg gtcccaatga 1920 cctggcccac atcgtcttcc ctgttctact gtcaccttca attactatac ttatgggtct 1980 taacggccgc gcagcggcac tgacgacatt ctcggcagcc cactcctcaa gttcttctgg 2040 aacttgatca aaagaagaag aagaaaaagg agagacataa acctccatag gaggtgtaaa 2100 aattcgatct aaatttgaat ttaaattatg aaattgtaat acataatcct taggagcttt 2160 ttcctttaat atattgaggg cctcagcttt ggaccctgaa ttgattgcct cggcatatgc 2220 gtcgttggca gattggcaac ctcctctagc tgatcttcca tcgacttgga aaactccatg 2280 atcaagcacg tctccgtctt tctccatgta ggttttgaca tctgtagagc tcttagctcc 2340 ctgaatgttc ggatggaaat gtgctgacct ggttggggat gtgaggtcga agaatctatt 2400 gtttctgcac tggaatttac cttcgaattg gatgagcaca tgcaagtgag gagtcccatc 2460 ttcgtgaagc tctctgcaaa ttctaataaa ttttttggaa gtgggtgttt ggatatttaa 2520 taattgggaa agtgcctctt ctttagctag agagcacttg ggataagtga gaaaataatt 2580 ttttgcattt attttaaacc gattgggggc tgccatattg acttggtcaa tcggtgtctc 2640 tcaactctct ctatgtatcg gtgtattgga gtcctatata tatggagact ccaaatggca 2700 tatttgtaat tttgaaaagt tctttaattc aaaattcaaa attcccaaag cggccatccg 2760 ta 2762 //