Dbfetch
ID JN674407; SV 1; linear; genomic RNA; STD; VRL; 5862 BP. XX AC JN674407; XX DT 15-OCT-2012 (Rel. 114, Created) DT 15-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Soybean dwarf virus MD6-Y soybean passage 1, complete genome. XX KW . XX OS Soybean dwarf virus OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5862 RA Gildow F.E., Stone A.L., Sherman D.J., Damsteegt V.D., Schneider W.L.; RT "Host Adaptation of Soybean Dwarf Virus Following Serial Passages on Pea RT (Pisum sativum) and Soybean (Glycine max)"; RL Unpublished. XX RN [2] RP 1-5862 RA Tian B.; RT ; RL Submitted (12-SEP-2011) to the INSDC. RL Plant Pathology, The Pennsylvania State University, 410 Buckhout Lab, Penn RL State University, State College, PA 16802, USA XX DR MD5; 2c780c4336ef479af57bc62147161d1b. XX FH Key Location/Qualifiers FH FT source 1..5862 FT /organism="Soybean dwarf virus" FT /host="white clover" FT /isolate="MD6-Y" FT /mol_type="genomic RNA" FT /country="USA:Maryland, Prince George's County, Beltsville" FT /isolation_source="symptomless leaves" FT /collection_date="01-Jun-2006" FT /PCR_primers="fwd_name: sbdv5utr, fwd_seq: FT ggttagcagcagtgtcrcaatacaacgacg, fwd_name: sbdv5utr, FT fwd_seq: ggttagcagcagtgtcrcaatacaacgacg, fwd_name: FT sbdv900myf, fwd_seq: gaaaatgatgagaagggtcag, fwd_name: FT sbdv1540f, fwd_seq: gacccactctcctgaggaactt, fwd_name: FT sbdv1235uf, fwd_seq: gtttgaatccccgttttct, fwd_name: FT sbdv2771uf, fwd_seq: ctttcaattgcgagtgtagc, fwd_name: FT sbdv3621f, fwd_seq: cgcagaatgctaaataggt, fwd_name: FT sbdv4571f, fwd_seq: ccacctaaagggttcctatc, fwd_name: FT sbdv3234yf, fwd_seq: tttcaaaggacggcatcaat, fwd_name: FT sbdv4336uf, fwd_seq: gttctcagtaygttaggaaaacg, fwd_name: FT sbdv5514yf, fwd_seq: gcttctggtgattacactgccg, rev_name: FT sbdv-md1090ur, rev_seq: gtactggtcatgtcaagctct, rev_name: FT sbdv1434ur, rev_seq: cctcatttcctttcccaacg, rev_name: FT sbdv2126r, rev_seq: gtgtggtatgatgcactactac, rev_name: FT sbdv2512r, rev_seq: cctgcgttccaaaagagac, rev_name: FT sbdv2959yr, rev_seq: agaagcaaaacctgatagg, rev_name: FT sbdv-nucp, rev_seq: cccggttctccgtctacc, rev_name: FT sbdv4595r, rev_seq: ccttgataggaaccctttag, rev_name: FT sbdv5534r, rev_seq: cggcagtgtagtcaccagaag, rev_name: FT sbdv5071yr, rev_seq: cgtcttgcggaggctacc, rev_name: FT sbdv5775ur, rev_seq: cgaggagagccctcgag, rev_name: FT sbdv412yr, rev_seq: aacaggcgctcaaattcgt" FT /note="soybean passage 1 yellowing strain" FT /db_xref="taxon:12049" FT 5'UTR 1..144 FT CDS join(145..1221,1221..2828) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:K4GQA2" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:K4GQA2" FT /protein_id="AFP55353.1" FT /translation="MFNFDSLVSATAKVVKDFIHFCYNRARHVYYALKRWLWELQGVFA FT AHDAFVDMCYDAMYGVEEFEWELQKQFSSAEHDVLIAKHEFERLLRDGAPLRTWPQPCA FT PIGSFRSSDDFQEAAREAENLSLMDPEPSLIKGSGDYSLDNPNRIEKFINLVQKKEVLS FT ATEQMIRHAYEEHIGEAPFGKWFNTLPSRMNYIKRAASKKAKAVKRSNSVRQMVNEVNV FT IPDFISICDVVQVDTGEKLPPKKDKDGEPLEPEPKLKMMRRVRSEHYGDARSYIRQHIR FT NNNMRLIDGSDVSHATINRYALKFCEDLELDMTSTAMLVDYAMTMVPIPLKNDIERAKI FT VHSPAARQIRQELGVLNAEGFLEGLCSDSGFESPFSILGLPEIVVRSGATPRKSRSVIS FT FLSQFTLGLDYQCPNPSLHNALVAVERRVFTVGKGNEVVLPYKNKPGIFSNLDYFRDSI FT VNKVGCPRTHSPEELAATYHSGKRSLYNAAVQSLKKKAVERSDANVTAFLKMEKHLMCK FT KIAPRLICPRNKRYNVELGRRLKFNEKKFMHAIDSTFESPTVLSGYDSFRVGKIIANKW FT SKFKRPVAIGVDASRFDQHVGVEALQWEHSIYNGAFKDPILKELLHWQTENRIMLFVED FT KILKFKVKGHRMSGDINTSSGNKLIMCGMMHYYFKTLGVKAELCNNGDDCVIICERKDE FT NKFRHMHSWFKDYGFDMQIETPVYKIGQIEFCQSKPVKINGYYRMVRKPESISKDAHSL FT ISMASAEDVKTFMSATAQCGMILNSGVPVLDAYHKCLFKASGYKKVSQEAIERIVSFGT FT QDKLGLRKERVEEPITMDNRLSYWESNGVDPQTQVLVERYFDNLTVHIEPRGVKRLTPL FT LDKTLLSIASVARKSVSLPILSK" FT CDS 3036..5207 FT /codon_start=1 FT /transl_except=(pos:3636..3638,aa:OTHER) FT /product="CP readthrough product" FT /db_xref="GOA:K4GUL7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:K4GUL7" FT /protein_id="AFP55354.1" FT /translation="MVAVSNVTIQRRRTRRAARRAPRVQLMAIPTATSRPQRRGRQRRR FT RRSNRGGSYISGGSGKAHTFVFSKDGINGSSKGSITFGPSLSECKPLSDGILKAYHEYK FT ITSILLQFITEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTRAINGLE FT WHDTSEDQFKIHYKGNGDSKIAGSFKISINVLTQNAKXVDGEPGPKPGPDPTPPPAPPP FT EPTPAKHERFIVYTGTMSTLISARQNSDSISLYSIRDQRIRYIEDENANWTNIKAQWYS FT QNSVEAVPMFIYPVPQGTWSIEISCEGYQATSSTTDPHRGKSDGMIAYDDDQNKVWNIG FT VQNNVTITNNKADADWKYGHPDLTINGERFDQKQVVEKDGTISFHLVTTGPNASFFLAG FT PAVKKTAKYNFCISYGAWTDRDMEFGLVSVVLDEHLEGVRGSQYVRKTLRPGHVSVNRS FT HRLQDCFTPVEYVSDEDSSSSSSSIVSNRPSTPDHDSDAQFAESLRGKLPSQTKLPPKG FT FLSRLSAKEKEEISSSKPSNVERQVGPLVAAYGYPSQTGVYDAAREILQAKEAAENLAE FT LERDLKEINRLEPPDIIVQEEIPDYIPPSEKVIQEDDPDYVPPIWRNADQAVTIAKSDH FT IDWSRPAYESGDPPKKAGTLKGTLSKLGGSLRSGESFLRGSLRKTQDQIDLDDKLSKLS FT VIQRSQYQRILNNLGKMRARAYIDGLDLN" FT CDS 3036..3638 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:F8TP69" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F8TP69" FT /protein_id="AFP55355.1" FT /translation="MVAVSNVTIQRRRTRRAARRAPRVQLMAIPTATSRPQRRGRQRRR FT RRSNRGGSYISGGSGKAHTFVFSKDGINGSSKGSITFGPSLSECKPLSDGILKAYHEYK FT ITSILLQFITEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTRAINGLE FT WHDTSEDQFKIHYKGNGDSKIAGSFKISINVLTQNAK" FT CDS 3052..3621 FT /codon_start=1 FT /product="movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:K4GPZ4" FT /protein_id="AFP55356.1" FT /translation="MSQYNDDALVGQHDALHEFSSWLFQRPPADHNAEDDNDDEGEVIE FT EEAIFPEDQARLTHSCFQRTASMVVPREVSLSGRLYQNASHSLMEYSRPTMNIRSRVSY FT YSSSPRPLPLRQAPSLMSLTHTASTPKFNRYLINSVSQRAVRRDSPQELSTASNGMIPV FT KINSRSTIRGTETPRSQAPSRSRSMS" XX SQ Sequence 5862 BP; 1744 A; 1242 C; 1367 G; 1509 T; 0 other; agtaaagttg acacctttac agaagtgatc ttgcttgtaa gagttaattc atcaagagtt 60 aatacaagat ccacctcccg gcaccttcgt atcgtgtttg aggtatctct agtgtttggt 120 tgtttcaata ctaggtaata cttaatgttt aattttgata gtttagtgtc ggccaccgcc 180 aaggtggtca aagattttat acatttttgt tataataggg cgaggcacgt atattatgcc 240 ctcaaacgct ggctctggga actccagggt gtgtttgctg cacatgacgc ttttgtcgac 300 atgtgctacg acgccatgta tggcgtcgag gagtttgaat gggagctgca aaagcagttc 360 tcaagtgctg aacatgacgt gctaatcgcc aagcacgaat ttgagcgcct gttaagggat 420 ggcgctccgt taaggacatg gccacaacca tgtgctccca tcggtagctt ccggtcgtct 480 gatgacttcc aagaggctgc cagggaagct gaaaacctgt ccttgatgga tccggaaccc 540 tccttgatta aagggtccgg tgattactca cttgacaatc ctaataggat tgaaaagttt 600 atcaacctcg ttcaaaagaa ggaggtactt tccgccaccg agcaaatgat tagacatgct 660 tatgaagagc atatcggtga ggcaccattc ggaaagtggt tcaacacact gccctctcgc 720 atgaattaca ttaagagggc tgcttcaaag aaggccaagg cggtaaagag atccaactca 780 gtccgtcaaa tggtaaatga ggtaaatgtc atccctgact ttatctcaat ttgtgatgtt 840 gtccaggtag acactggtga gaagctcccc cccaagaaag acaaagacgg ggagccatta 900 gagcctgaac ctaaattgaa aatgatgaga agggtcaggt ccgagcacta tggtgatgct 960 cgttcataca taaggcagca tattcgcaac aataacatgc gccttattga cggctctgat 1020 gttagccatg ctaccatcaa ccgatatgct cttaagttct gcgaagactt agagcttgac 1080 atgaccagta ctgcaatgct ggttgattat gctatgacaa tggtgcccat tcccctcaag 1140 aatgacattg aacgggcgaa gattgtccat tctcctgcag ccaggcagat aaggcaggag 1200 ttgggcgttc taaacgctga ggttttttag aggggctctg ctccgactct ggttttgaat 1260 ccccgttttc tattttgggg ttaccagaga tcgtggtgcg tagtggagct acacctagga 1320 agagtcgtag tgtaattagc tttctttcgc agtttacttt aggtctagat taccagtgtc 1380 caaatcccag cttacacaat gcactggtgg cggttgaacg tagagtattc accgttggga 1440 aaggaaatga ggtagtgcta ccttacaaga acaagccagg aatattttcc aatcttgatt 1500 actttcgcga ctccatagtc aacaaagttg gttgtccaag gacccactct cctgaggaac 1560 ttgccgcaac gtaccactct ggaaagagaa gtttgtacaa tgctgctgtt caaagcctta 1620 aaaagaaggc agtcgaaagg agtgatgcta acgtgacagc ctttctcaag atggagaaac 1680 atctgatgtg taagaagata gcacccaggt tgatatgtcc ccgaaacaaa aggtacaatg 1740 ttgaattggg acgtcggttg aagtttaatg agaagaaatt catgcatgca atcgactcaa 1800 cctttgaatc cccaactgtt cttagtggat atgacagttt cagagttggg aagataatag 1860 ccaataaatg gtccaaattt aagagaccag ttgcgatagg tgttgatgcg agcagatttg 1920 atcaacatgt gggggtagaa gcactccaat gggagcactc gatttacaac ggtgcattta 1980 aagatcccat tctcaaggag ttgctacact ggcaaacaga gaacagaatt atgctgtttg 2040 ttgaagacaa aatcctcaag tttaaggtca aaggacacag gatgtccggc gacattaaca 2100 cctcttctgg caacaaatta atcatgtgtg gtatgatgca ctactacttc aagacacttg 2160 gagtcaaagc cgaactctgc aataacggcg atgattgtgt gatcatatgt gagcggaaag 2220 atgaaaataa attccgacac atgcatagct ggtttaaaga ctatgggttt gacatgcaga 2280 ttgagactcc tgtctacaag attggacaga tagagttttg tcaaagtaaa ccggttaaga 2340 ttaatggcta ttatagaatg gtgcgtaaac cagagagcat atccaaagac gcccattccc 2400 tcatttccat ggcatcagct gaagatgtca aaactttcat gagtgcaacc gcccaatgcg 2460 gtatgatctt gaatagtggt gtacctgttc ttgatgctta tcacaaatgc ctatttaaag 2520 catcggggta caagaaggta tcgcaagaag caatagaaag aatagtctct tttggaacgc 2580 aggacaaact cgggctcagg aaagagcgag ttgaggaacc aataacaatg gataataggt 2640 tgagttattg ggagtccaat ggggttgacc ctcagacaca ggtccttgtc gaacgatatt 2700 ttgacaatct gacggtccat atcgaacccc gcggcgtaaa gagattgacg cctttactag 2760 ataaaacttt gctttcaatt gcgagtgtag cacgaaaatc tgtgtcgcta ccaatacttt 2820 caaaatagaa gcactcatag taaccatagt aataatagta ctagtagtag ttagtttgtt 2880 agattacgct agttcataca gataaattgc aacggattac aaattcctat caggttttgc 2940 ttctggattc atttccagca ttcctgtatc aatattggca atttattttg tctacctaaa 3000 aatttcaaag aatctgcgag agataatcaa cgagtatggt cgcggttagc aatgtcacaa 3060 tacaacgacg acgcactcgt agggcagcac gacgcgctcc acgagttcag ctcatggcta 3120 ttccaacggc caccagcaga ccacaacgca gaggacgaca acgacgacga aggagaagta 3180 atagaggagg aagctatatt tccggaggat caggcaaggc tcacacattc gtgttttcaa 3240 aggacggcat caatggtagt tccaagggaa gtatcacttt cgggccgtct ctatcagaat 3300 gcaagccact ctctgatgga atactcaagg cctaccatga atataagatc acgagtatct 3360 tattacagtt catcaccgag gcctcttcca cttcgtcagg ctccatcgct tatgagcttg 3420 acccacactg caagtactcc gaaattcaat cgctacttaa taaattcagt atcacaaaga 3480 gcggttcgaa gagattcccc acaagagcta tcaacggcct cgaatggcat gataccagtg 3540 aagatcaatt caagatccac tataagggga acggagactc caagatcgca ggctccttca 3600 agatctcgat caatgtccta acgcagaatg ctaaataggt agacggagaa ccggggccga 3660 aaccaggtcc ggaccccaca cccccaccag caccaccacc tgaaccgacg ccagccaaac 3720 acgagagatt cattgtttac accggtacta tgtcaacact catcagtgct agacagaact 3780 cagatagtat atcactctac tcaatcagag atcagaggat cagatacatt gaggatgaaa 3840 atgcgaactg gacgaacatt aaggcgcaat ggtattcaca gaactctgtg gaagccgtgc 3900 ctatgtttat ttacccagtt ccacaaggta catggtcaat tgaaatctct tgtgaaggtt 3960 accaggcaac atcaagcacc acagatcccc atcgggggaa atctgatgga atgattgctt 4020 atgatgatga tcaaaacaag gtgtggaata ttggtgtgca aaataatgta accataacca 4080 acaacaaagc cgatgccgat tggaaatacg gtcaccctga tctgacgatc aatggtgaac 4140 gttttgacca aaagcaagta gtcgagaaag atggaacaat ttcgtttcat ttagtaacta 4200 ctgggcctaa cgcgagtttc ttcttagctg gccctgccgt taagaagact gccaagtaca 4260 acttctgtat atcatatgga gcttggacag accgcgatat ggagtttggt ttggtatcag 4320 ttgttctcga tgaacattta gagggtgtta gaggttctca gtatgttagg aaaacgctaa 4380 gaccaggtca tgttagcgtc aatcgttctc accgattgca agactgtttc acaccagtgg 4440 aatatgtcag tgatgaggat agtagtagta gtagtagtag tatagttagt aatcgaccat 4500 caactccgga tcatgatagt gatgcccaat ttgctgaatc tctcagaggt aagcttccgt 4560 ctcagactaa gctaccacct aaagggttcc tatcaaggtt aagcgctaaa gaaaaagaag 4620 aaatctcctc ttcaaaaccc tcaaatgttg agcgccaggt tggtcctctt gttgcagctt 4680 atggataccc gtctcaaaca ggtgtttacg atgctgccag agagatcctg caagctaaag 4740 aagccgcaga aaacttggca gaattagaaa gggatttgaa agagatcaat aggctagaac 4800 caccggatat aatagttcag gaagaaatcc ctgactacat accgccatcg gagaaagtga 4860 tccaggaaga tgatcctgat tacgtacctc ctatatggcg taatgccgac caggctgtta 4920 cgattgctaa aagcgatcat atagactgga gtcggccagc ttatgagtca ggtgatccac 4980 ctaagaaggc aggtacactc aagggtactc tctctaaatt aggagggtct cttagaagtg 5040 gagaatcgtt tcttagaggt agcctccgca agacgcaaga tcaaattgat ttagacgaca 5100 aattgtctaa acttagtgtt atccaaagga gtcaatacca gcggatttta aataacctag 5160 ggaaaatgcg tgcgcgagca tacatcgatg gtttagattt aaattagtat agtagaagta 5220 agtgtgcgct ttccatcaca ttgaattgga gccaaccttg gtgagttgct gtcgtgggat 5280 cctgggaaac aggttcggtg aacaaaaagc cggtaatctc gggcgttcgt cagacgccgt 5340 cgtatcaaca cagtatgcat atccatcaat aacccaattt tcttagtgac taaaaattag 5400 tgttagtttt tccgcctctc ttgtaaacca catacaagat gcgagcttgt ggagagtacc 5460 atcccttgaa taaggatggt tgaaagtttc tggtcccaat ccattgatca aaattggcac 5520 tgcttctggt gactacactg ccgctggcga tacagcgtaa acaatttcta cttcttgttc 5580 gatgaaacga gaacaattag taaagtcttg ccgttcacat gtctatttga cggtactagg 5640 cttcgtccct ctgatgacgt taaatgaaag cggagtaaac cgacatcacc ttactaggtt 5700 gggttaacct agggaaaccg ggaaaatgcc cgggacactt ggtttagtgg attttaaact 5760 cgagggctct tcctcgttaa acagggggta gccaggttga aaactggcac tagggagcga 5820 tccctctttg ttgttaaggt ggctttgtgt ccacctgccc cc 5862 //