ID JN664253; SV 1; linear; genomic RNA; STD; VRL; 4767 BP. XX AC JN664253; XX DT 05-FEB-2012 (Rel. 111, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate CG-1 segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-4767 RA Liu Y.T., Sun W.T., Chen W., Chen X.J., Xu Y., Li Z.Y., Li Y.Z.; RT "Report for complete genomic sequence of Tomato spotted wilt virus from RT lettuce in southwest of China"; RL Unpublished. XX RN [2] RP 1-4767 RA Liu Y.T., Sun W.T., Chen W., Chen X.J., Xu Y., Li Z.Y., Li Y.Z.; RT ; RL Submitted (10-SEP-2011) to the INSDC. RL College of Agronomy and Biotechnology, and College of Plant Protection, RL Yunnan Agricultural University, Yunnan Agricultural University, Kunming, RL Yunnan 650201, China XX DR MD5; 6c6337c300465d2782df6c26f27b36b9. XX FH Key Location/Qualifiers FH FT source 1..4767 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="Lactuca sativa" FT /lab_host="Emilia sonchifolia (Linn.)DC." FT /isolate="CG-1" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="2009" FT /note="serogroup: 1" FT /db_xref="taxon:3052585" FT CDS 101..1009 FT /codon_start=1 FT /product="non-structural protein" FT /note="cell-to-cell movement; NSm" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:H6UMX0" FT /protein_id="AEZ06307.1" FT /translation="MLTLFGNKGSSKSARKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV FT ILKGQGTITDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIISKGNSEKQIKKQLKELSSNLER FT SVEEEEEGISDSVAQLSFDEI" FT CDS complement(1276..4683) FT /codon_start=1 FT /product="glycoprotein precursor" FT /note="Gn/Gc" FT /db_xref="GOA:H6UMX1" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:H6UMX1" FT /protein_id="AEZ06308.1" FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP FT EVYDDSAENEVPTAASIQRKAILETLTSLMLESQTPGTRQIREEESTIPIFAGSTTQKI FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENAEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLVILSQM FT PMSMAQTTQCLSGCFYVPGCPVLVTSKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG FT PNDCIENQNCVAHPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNRTDKISGMIAGDSLDKNETSIPENILPRQSLIFDSVVDGKYRYMVEQ FT SLLGGGGTVFMLNDKTSEKAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDSHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPISFKDFSSFFLEKSFSLGKLKIVVDLPSDLFKVAPKRPSITSTRL FT NCNGCLLCGQGLSCILEFFSDLTFSTAISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNPDIFVEVLVNNVIVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVILLIAFIFLVIYFCSILTTICKGYVKNESYKSRSKIEDD FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4767 BP; 1536 A; 853 C; 838 G; 1540 T; 0 other; agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat aaatcaatta 60 cattacacaa gctactctac cttaggctgt tgaactcaaa atgttgactc ttttcggtaa 120 taaggggtct tctaagtctg ccagaaagga tgaaggtcct ttagtttcac ttgctaaaca 180 taacggtaat gttgaagtct ctaagccgtg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagaaggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 gaagcaaaat gcaaataagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tccaggattg tgatatgggt ttgccccact ataccaaacc ctacagggaa 540 acttgtggtt gccttggtcg atcccaacat gccatctgaa aagcaagtca ttctgaaggg 600 tcaggggaca ataactgatc ctatatgttt tgtcttttat ctgaactggt ctattccgaa 660 aatgaataat actccagaaa actgctgcca gctgcatttg atgtgcagcc aagaatacaa 720 gaagggggtt tcttttggta gtgtcatgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagataaaa gttgcatggt catacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgaag cctgcaagct gataatttct aagggaaaca gtgagaagca 900 gattaaaaaa cagcttaaag aattgagctc aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgatagtg ttgctcagtt atcttttgat gaaatatagt actttaaatg 1020 tcacttattt aagcttaaat ttctgttaat tttgcatttt aaatcaaaaa ccaaaacaaa 1080 aacaaaaaga aaaaacaaaa aattaaaaac aaaaaacaaa aacaaaataa ggctgaaaag 1140 ccaaactttg gtccgaagac tctttttgtt gttttttgtt tatttgtatt ttttgtttgt 1200 tttttgttta ttttatatat acataatctg actaatgtag aagattgaat caaatttagc 1260 ctgtgacaag cagactcaga caaggtgaga gaaatccata ggtggccttc gccttgtcat 1320 tgtatctttc atcaacatag gggctttgat ctcagaatca tcatcatcct ctatcttgga 1380 tctagactta taagattcat tcttgacata tcctttacaa atggttgtta gaatagaaca 1440 gaaataaatc acaaggaaaa tgaatgcaat aagcaatatc actctgatag tatcaaaaaa 1500 tgagccaaaa taacttgcaa tgaaattgaa tggactttta atataatccc agaagcccca 1560 tgctgaagaa tcagaattat attgttgttc ttcatgggca tactcatcat tttgatctat 1620 tatgttctct ggttcttcta caataacatt attgaccaga acttccacaa aaatatccgg 1680 attgccttct gggtacaacg tcattttctt cttgtccgga ttagcagaac aaaacattgt 1740 tatgttgtat ttattagacc cttttttaac agccagctga taagtagata gagagcaagc 1800 atctatagaa attgcagtag aaaatgtcaa atctgagaaa aattccaaaa tgcaagataa 1860 accttgaccg catagaagac agccattgca attcaatctt gtcgaagtta tggaaggtct 1920 cttaggagca actttaaaaa gatcagatgg aagatcaacg acaatcttga gtttccctaa 1980 actaaaagat ttttccaaga aaaaactaga gaaatctttg aaactaatgg gaatatctga 2040 tatttgctct aaaccagatc taaatctgta tgtgtcatat ccgcatgttt taatagtgat 2100 tgattttttc cctattgctg cacaatccca agacatgtca tctccttcta gagttttctt 2160 agtaaaaata ggcactccat catgagtcaa ttgtggatga ccaaacattt tcacaggatc 2220 attcaagttt gcaatatttc cagagtaaat atgactgtcg ggtccatgag ctatcagttc 2280 acctatagtg ataccatcat tgtgcagatc tgcttgtata tcagcttgaa acaatgcatt 2340 ttcataagga acctcttcag taatccttga gcattgacct cctaaaatac cagaaatgca 2400 aacatctgcc actatagttg attttagcac tgaataaatt ctatatgatt tatccatgtc 2460 ataaatattt cgacagaacc cgcatgtagc accttcatta attgcaaaac accaagcttc 2520 ttcacatccc caataagaag ttggtgttat acaaaaatct tggaaacctg ttaaagcttg 2580 attttttctg caagtgtcac agtttcctgt acaagtggaa taaaaatctg tgtgagtgct 2640 ttggatagga gctgttgtgt atttttcaga cacttcataa tgaattccca cacttttgat 2700 ataaatcacg aatttttttg ctttttctga ggtcttatca tttaacatga atacagtccc 2760 tcctcctcct aaaagagatt gttctaccat atatctatat ttcccatcca caacagaatc 2820 aaagatcaat gattgtctag gcagaatgtt ctctggtatg cttgtttcat ttttgtctag 2880 agaatctcct gcaatcattc cggaaatctt gtctgtacgg ttataggaat ctattatacc 2940 attcctcaat ctcttagcct catacagacc aaccgatgtt aaccccaaag agcttcctgt 3000 ataatctgaa aacccattat acaaaggttt gttgcgaaat aaatctaagt attcgcaacc 3060 taatctacat tttataagat tatcaataga tgggtgtgca acacaattct ggttctctat 3120 gcaatcatta ggaccttcta taacaatgtt agtgccaaag atactttcta taatcttatc 3180 ttcttttaca ttacagtaac attgatcttt ttcagggcat ttttcaaatt tgcttgtaac 3240 caaaactgga cagcctggaa cataaaaaca tccactcaaa cattgagtag tttgagccat 3300 agacatgggc atttgagaca aaatgaccaa acctattaag atttcagtca caaatttcag 3360 caaactaaag cttagcttag tgttcactat tagatggaac cattccatgc tagtccactt 3420 atgtttgttg tagtcatgat ctgtttcttt ggacagtatg ggacactctg aagagtgttc 3480 ttttgaggct ttgcttttgt tgcagatgca aattttagta cactcatgtg tgattatgca 3540 caaattgcca cagttagaac atttgaatgg aaaatatttc cataagcaat ttatgagcaa 3600 caaaataggg tatgtgatca agcctataag atcataccag agaaagagag gtttagttgt 3660 cttgtttact aaccaccgga tagggaaata gatcaacaaa gctatcaata ttaatcttat 3720 ccaagagaaa ttgatgcagg ctgtttgctt ataaatgctc tttgaatatt tgattatgca 3780 atctctaact cttttgtttg tttttggtat tttagctgat ttgtcaccgc acaagagatt 3840 gtgctcacca tccaacattt cttcagtaaa agtgatgctt gctgatccag aaaaagatat 3900 gaccttgtgt tccgcatttt caccaggttt ttttatcaaa taacccatga tcttctcggg 3960 gctagtgatg ctaacagtat agggattggc aaagtttgat ttagttattt tgcagtctcc 4020 agataacttt acggtttgta atgatactgt tccattagtg gggtatgagt tataagttat 4080 aggataatta tcttgtgtca ggctttctga aatgaagaat tttgttccaa ctgaaaaatg 4140 ccttttgttg tcaagtttgg taatgggaat aaccgggact ttggagaatc tctttggcaa 4200 atttaaagaa ttgtcacatt tttctaaccc ttctgctgaa tcagaaacac aggaatatat 4260 gacaccatta ttttccactt gataataaac attataagtg gatatccctt ttatctcgca 4320 ttttaatgaa gaagcattca agcagttgtt aggaagatcc gagacagaga ttattttttg 4380 cgtagttgac ccagcaaaaa tagggatggt tgattcttct tctcgtatct gacgggttcc 4440 aggagtctga gattctagca ttagactagt taaagtctcc aagatagcct tgcgttgaat 4500 cgatgcagca gtgggtactt cattctcagc agaatcatca taaacctcag gatgatctcc 4560 acgaattatt tctactttgg catctgtggc tctgaagatc aagaatgcca acaagacaga 4620 actcagggca atcgtgaaaa gactcacttt taccactagt tctagtagtt ttaaaattct 4680 catcttatac gtctgctcag attataatgg ttatatgatt aatttcaaga tgtctggatt 4740 aagatttttg tttgcactga ttgctct 4767 //