Dbfetch
ID JN664252; SV 1; linear; genomic RNA; STD; VRL; 2920 BP. XX AC JN664252; XX DT 05-FEB-2012 (Rel. 111, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate CG-1 segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-2920 RA Liu Y.T., Sun W.T., Chen W., Chen X.J., Xu Y., Li Z.Y., Li Y.Z.; RT "Report for complete genomic sequence of Tomato spotted wilt virus from RT lettuce in southwest of China"; RL Unpublished. XX RN [2] RP 1-2920 RA Liu Y.T., Sun W.T., Chen W., Chen X.J., Xu Y., Li Z.Y., Li Y.Z.; RT ; RL Submitted (10-SEP-2011) to the INSDC. RL College of Agronomy and Biotechnology, and College of Plant Protection, RL Yunnan Agricultural University, Yunnan Agricultural University, Kunming, RL Yunnan 650201, China XX DR MD5; 5b0e9dc38ac6a1015d8718cece95fe06. XX FH Key Location/Qualifiers FH FT source 1..2920 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="Lactuca sativa" FT /lab_host="Emilia sonchifolia (Linn.)DC." FT /isolate="CG-1" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="2009" FT /note="serogroup: 1" FT /db_xref="taxon:3052585" FT CDS 87..1487 FT /codon_start=1 FT /product="nonstructural protein" FT /note="gene-silencing suppressor; NSs" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:H6UMW8" FT /protein_id="AEZ06305.1" FT /translation="MSSSVYESIIQTKASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ FT LYSDSRSKSSFGYTAKVGNLPCEEEEILSQHVYIPIFDDIDFSININDSVLALSVCSNT FT VNTNGVKLRVINVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLSC FT VKEHTYKVEMCYNQALGKVNVLSPNRNVHEWLYCFKPNFNQVESNNRTVNSLAVKSLLM FT SAENNIMPNSQAFVKASTDSHFKLNLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSIA FT CIPNHNSVETALNISVICKHQLPIRKCQAPFELSMMFSDLKEPYNIVHDPSYPQRIVHA FT LLETHTSFAQVLCNNLQEDVIIYTLNNYELTPGKLDLVERTLNYSEDICKRKYFLSKTL FT ECLPSNTQTMSYLDSIQIPTWKIDFARGEIKISPQSISVAKSLLKLDLSGIKKKESKVK FT EAYASGSK" FT CDS complement(1991..2767) FT /codon_start=1 FT /product="nucleocapsid protein" FT /note="Np" FT /db_xref="GOA:H6UMW9" FT /db_xref="InterPro:IPR002517" FT /db_xref="PDB:5Y6J" FT /db_xref="UniProtKB/TrEMBL:H6UMW9" FT /protein_id="AEZ06306.1" FT /translation="MSKVKLTKENIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDQKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA" XX SQ Sequence 2920 BP; 925 A; 549 C; 464 G; 982 T; 0 other; agagcaattg tgtcagaatt ttgttcataa tcaaacctca cttagaatca caatactgta 60 ataagaacac agtaccaata accataatgt cttcaagtgt ttatgagtcg atcattcaga 120 caaaagcttc agtctgggga tcaactgcat ctggtaaagc tgttgtagat tcttactgga 180 ttcatgaact tggtactggt tctccactag ttcaaaccca gttgtattct gattcaagaa 240 gcaaaagtag ctttggctat actgcaaagg tggggaatct tccctgtgaa gaagaagaga 300 ttctttctca gcatgtgtat atccctattt ttgatgatat tgattttagc atcaatatta 360 atgactctgt tctggcacta tctgtttgct caaatacagt taatactaac ggagtgaaac 420 taagggtcat taatgttttg tctcctgctc agctccattc tattggatct accatgaaca 480 gatctgatat tacagaccga ttccagctcc aagaaaaaga cataattccc aatgacagat 540 acattgaagc tgcaaacaag ggctctttgt cttgtgttaa agagcatacc tataaggtcg 600 agatgtgcta caatcaagct ttgggcaaag tgaatgttct atcccctaac agaaatgtcc 660 atgaatggct gtactgtttc aagccaaatt tcaatcaagt tgaaagcaac aacagaactg 720 taaattctct tgcagtgaaa tctcttctca tgtcagcaga aaacaacatc atgcctaact 780 ctcaggcttt tgtaaaagct tccactgatt ctcatttcaa gctgaacctc tggctaagag 840 ttccaaaggt tttgaagcag atttccattc agaaattgtt caaagttgca ggagatgaaa 900 caaacaaaac attttattta tctattgctt gcattccaaa ccataacagt gttgagacag 960 ctttaaacat ttctgttatt tgcaagcatc agctcccaat ccgtaaatgt caagctcctt 1020 ttgaattatc aatgatgttt tccgatttaa aggagcctta caacattgtt catgatcctt 1080 cataccctca gaggattgtt catgctctgc ttgaaactca cacatctttt gcacaagttc 1140 tttgcaacaa cttgcaagaa gatgtgatca tctacacttt gaacaactat gagctaactc 1200 ctggaaagtt agatctagtt gaaagaacct tgaattacag tgaagatatc tgcaaaagga 1260 aatatttcct ttcaaaaaca cttgaatgtc ttccatctaa cacacaaact atgtcttact 1320 tagacagcat ccaaatcccc acatggaaga tagactttgc cagaggagaa attaaaattt 1380 ctccacaatc tatttcagtt gcaaaatctt tgttaaagct tgatttaagc gggatcaaaa 1440 agaaagaatc taaggttaag gaagcgtatg cttcaggatc aaaataatct tgctttgtcc 1500 agctttttct aattatgtta tgtttatttt ctttctttac ttataattat ttctctgttt 1560 gtcatctctt tcaaattcct cctgtctagt agaaaccata aaaacaaaaa ataaaaatga 1620 aaataaaatt aaaataaaat aaaatcaaaa aatgaaataa aaacaacaaa aaattaaaaa 1680 acgaaaaacc aaaaagaccc gaaagggacc aatttggcca aatttgggtt ttgtttttgt 1740 tttttgtttt ttgtttttta ttttttattt tatttttatt ttattttatt tttattttat 1800 ttttatttta tttatttttt gttttcgttg tttttgttat tttattattt attaagcaca 1860 acacacagaa agcaaacttt aattaaacac acttatttaa aatttaacac actaagcaag 1920 cacaagcaat aaagataaag aaagctttat atatttatag gcttttttat aatttaactt 1980 acagctgctt tcaagcaagt tctgcgagtt ttgcctgctt tttaaccccg aacatttcat 2040 agaacttgtt aagagtttca ctgtaatgtt ccatagcaat acttccttta gcattaggat 2100 tgctggagct aagtatagca gcatactctt tccctttctt cacctgatct tcattcattt 2160 caaatgcttt gctttttagc acagtgcaaa cttttcctaa ggcttccctg gtgtcatact 2220 tcttttgatc gatcccgagg tctttgtatt ttgcatcctg atatatagcc aagacaacac 2280 tgatcatctc aaagctatca actgaagcaa taagaggtaa gctacctccc agcattatgg 2340 caagcctcac agactttgca tcatcaagag gtaatccata ggcttgaatc agagggtgag 2400 aagcaatctt agatttgata gtattgagat tctcagaatt cccagtttcc tcgacaagcc 2460 tgaccctgat caagctatca agccttctga aggtcatgtc agtggctcca atcctgtctg 2520 aagttttctt tatagtgatt ttgccaaaag taaaatcact ttgcttaata accttcatta 2580 tactctgacg attcttcagg aatgtcagac atgaaataat gctcatcttc ttgatctggt 2640 caaggttttc cagacaaaaa gtcttgaagt taaatgctac cagattctga tcttcttcaa 2700 attcaagatc tttgccttgt gtcaacaaag caacaatgtt ttccttagtg agcttaacct 2760 tagacatgat gatcgtagaa gttgttatat gctttgaccg tatgtaattc aaggtgcgaa 2820 agtacaactc tgtatcccga ggtcgtttct ttagttctta atgtgatgat ttgtaagact 2880 gagtgttaag gtatgaacac aaaattgaca cgattgctct 2920 //