ID JN663870; SV 1; circular; genomic DNA; STD; VRL; 2750 BP. XX AC JN663870; XX DT 02-JAN-2013 (Rel. 115, Created) DT 02-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Pepper leaf curl virus isolate Palampur segment DNA-A, complete sequence. XX KW . XX OS Pepper leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2750 RA Vinothkumar R., Singh A.K., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2750 RA Vinothkumar R., Singh A.K., Chakraborty S.; RT ; RL Submitted (09-SEP-2011) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Mehrauli Road, New Delhi, Delhi 110067, India XX DR MD5; 0fc62a6ab85aaae8dea03de45bd36b7b. XX FH Key Location/Qualifiers FH FT source 1..2750 FT /organism="Pepper leaf curl virus" FT /segment="DNA-A" FT /host="chilli" FT /isolate="Palampur" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="S Takur" FT /collection_date="17-Aug-2009" FT /clone="BamH I-2" FT /db_xref="taxon:83839" FT gene 142..498 FT /gene="AV2" FT CDS 142..498 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:L0EL81" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:L0EL81" FT /protein_id="AGA60297.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDL FT ISVIRAKNYVEATSRYNHFHSRLEGTPPSQLRQPICQPCCCPHCPRHKGKSMGQQAHEQ FT EAQDVQDVQEPRCS" FT gene 302..1072 FT /gene="AV1" FT CDS 302..1072 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:L0EKH8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:L0EKH8" FT /protein_id="AGA60296.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWA FT NRPMNRKPRMYRMYRSPDVPRGCESPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVFNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1069..1473) FT /gene="AC3" FT CDS complement(1069..1473) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /db_xref="GOA:L0ELX1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L0ELX1" FT /protein_id="AGA60300.1" FT /translation="MDSRTGEPITAAQAENSVFIWEITNPLYFKIIEHHHRPFLRNHDI FT ITVQVRFNRNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLQFLNNFAVISINN FT VLRAVDHVLWNVLAQTIHVQSSNIIKFNLY" FT gene complement(1214..1618) FT /gene="AC2" FT CDS complement(1214..1618) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /db_xref="GOA:L0EKR4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L0EKR4" FT /protein_id="AGA60299.1" FT /translation="MRPSSPSRAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREFRVYLGDNKSPVFQDNRAPPPAIPEEPRHHNSPSAVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1521..2606) FT /gene="AC1" FT CDS complement(1521..2606) FT /codon_start=1 FT /gene="AC1" FT /product="REP" FT /db_xref="GOA:L0EJ67" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L0EJ67" FT /protein_id="AGA60298.1" FT /translation="MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIR FT VCRELHENREPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYV FT EKDGDFIDFEVFQIDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFH FT NLNANLDRIFTPPLEVYVSPFSSSSFDQVPEELEEWAAENVLGAAARPLRPMSIVIEGE FT SRTGKTIWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALRNWALRNATFITLEGPL FT YSGSNQSAAQASQEGDQASTR" FT gene complement(2156..2455) FT /gene="AC4" FT CDS complement(2156..2455) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L0EKI3" FT /protein_id="AGA60301.1" FT /translation="MRIGNLIYTCSSNSRENTNAQTTDSSTLFPQPGQHISIRTFRELK FT ALQMSKPMWRKTETSLTLRFSKSMADQLEEVANLPTTHMPRQSIQGPSLRPSIF" XX SQ Sequence 2750 BP; 750 A; 567 C; 636 G; 797 T; 0 other; accggatggc cgcgattttt ttaaccgtgg gccccaccac gcacgtgctg acaaagacat 60 gtgcaccaat taaaatcgtc cctcatagct taattatttc atggtcccta tataaacttg 120 gtagagtgcc acaccttacc aatgtgggat ccattattaa acgagttccc tgaaaccgtt 180 cacggtttta ggtgtatgtt agccgttaaa tatctgcagt tagtagaaaa tacgtattct 240 ccagatactc tggggtacga tttaatcagg gatttaattt cagttattag ggctaagaat 300 tatgtcgaag cgaccagcag atataatcat ttccactccc gcctcgaagg tacgccgccg 360 tctcaacttc gacagcccat atgccagccg tgctgctgcc cccattgtcc gcgtcacaaa 420 ggcaagagca tgggccaaca ggcccatgaa caggaagccc aggatgtaca ggatgtacag 480 gagcccagat gttcctaggg ggtgtgaaag cccatgtaag gtccagtcgt ttgagtctag 540 acacgatgta gttcatatag gcaaggtcat gtgtattagt gatgttaccc gtggtactgg 600 gttaacccat agagtaggta agcgcttctg tgttaagtct gtgtatgtat tagggaagat 660 atggatggat gagaatatca agactaagaa tcacacgaat agtgtgatgt ttttccttgt 720 ccgtgaccgt cgtcctgttg ataaaccaca agattttgga gaggtgttca acatgtttga 780 caacgagcct agcactgcta ctgtgaagaa tatgcataga gatcgttatc aggttttgag 840 gaaatggcac gcaacggtta caggtggaca gtacgcgtcg aaggaacagg cattagttaa 900 gaagttcgtt agggttaata attatgttgt gtttaaccag caggaagctg gtaaatatga 960 gaatcatact gagaatgcat tgatgttgta catggcgtgt actcacgcct ctaatcctgt 1020 gtatgctacc ttaaagatac ggatctattt ctatgattca gtatcgaatt aataaagatt 1080 gaattttatt atatttgaac tttgtacatg aattgtttgt gctaatacat tccataatac 1140 atgatcgaca gctctaagta cattgtttat actaattaca gcaaaattat ttaaaaactg 1200 caacacttgg gtcctaaata cccttaagaa atgaccagtc tgaggctgta aggtcgtcca 1260 gattcggaag gttagaaaac atttgtgtat ccccaacgct ttcctcaggt tgcgattgaa 1320 ccgcacttgg actgttatga tgtcgtggtt cctcaggaat ggccggtggt ggtgctcgat 1380 tatcttgaaa tacaggggat ttgttatctc ccagataaac acggaattct ctgcttgagc 1440 tgcagtgatg ggttcccctg tgcgtgaatc catatccgtg gcagcgtaat gcgatgaaat 1500 atgaacagcc gcagtctagg tcaacgcgtc gacgcctggt ccccttcttg gctagcctgt 1560 gctgcacttt gattggaacc tgagtagagt gggccctcga gggtgatgaa ggtcgcattc 1620 cttaaagccc aatttctgag tgcgctattt ttctcttcat ccaagaactc tttatagctg 1680 gaattgggtc ctggattgca gaggaagata gcgggaattc cacctttaat ttgaactggc 1740 tttccgtatt tagtgtttga ttgccagtcc ctttgggccc ccatgaattc tttaaagtgc 1800 tttaggtagt ggggatcgac gtcatcaatg acgttgtacc aggcgtcatt actatagacc 1860 tttgggctaa ggtctagatg tccacacaaa tagttgtgtg gacccaatga cctggcccat 1920 atcgtcttcc ccgtcctact ctcaccctct atgacaatac tcatgggtct taaaggccgc 1980 gcagcggcac cgagaacatt ctcggcagcc cattcctcaa gttcctcggg aacttgatca 2040 aaagaagaag aagaaaaagg agaaacataa acctccaacg gaggtgtaaa aatcctatct 2100 aaattagcat ttaaattatg aaattgtaaa acataatctt tgggagcttt ctcccttaaa 2160 atattgaggg ccgaagactt ggaccctgaa ttgattgcct cggcatatgc gtcgttggca 2220 gattggcaac ctcctctagc tgatctgcca tcgatttgga aaacctcaaa gtcaatgaag 2280 tctccgtctt tctccacata ggctttgaca tctgaagagc ttttagctct ctgaatgttc 2340 ggatggaaat gtgctgacct ggttggggaa ataaggtcga agaatcggtt gtttgtgcat 2400 tggtattttc cctcgaattg gacgagcacg tgtagatgag gttccctatt ctcatgcaat 2460 tctcggcaaa ccctaataaa taatttatta actggggttt ccaagttttg taattgggaa 2520 agtgcctctt ccttagtgag agagcagttg ggatatgtga ggaaataatt tttggcgttt 2580 atattgaatc tcccagccct aggcattttg gtggacactc aaacttacta tgtaatcggt 2640 ggaatggggg acaatatata tgtgtccacc aatggcaaat tggtaattag tgtcatctca 2700 aaaaattcaa aattcaaatt ccgacaaaag cggccatccg cattaatatt 2750 //