ID JN663866; SV 1; circular; genomic DNA; STD; VRL; 2763 BP. XX AC JN663866; XX DT 02-JAN-2013 (Rel. 115, Created) DT 02-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Chilli leaf curl virus isolate New Delhi segment DNA-A, complete sequence. XX KW . XX OS Chilli leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2763 RA Vinothkumar R., Singh A.K., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2763 RA Vinothkumar R., Singh A.K., Chakraborty S.; RT ; RL Submitted (09-SEP-2011) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Mehrauli Road, New Delhi, Delhi 110067, India XX DR MD5; df4438f60e5b4fb82381b35712f45607. XX FH Key Location/Qualifiers FH FT source 1..2763 FT /organism="Chilli leaf curl virus" FT /segment="DNA-A" FT /host="chilli" FT /isolate="New Delhi" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="N Kushwaha" FT /collection_date="20-Dec-2010" FT /clone="BamH I-2" FT /db_xref="taxon:172278" FT gene 147..503 FT /gene="AV2" FT CDS 147..503 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:L0EKH4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:L0EKH4" FT /protein_id="AGA60291.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLLENTYSPDTVGYDLIRDL FT ISVIRAKNYVQATSRYNHFHARLEGTPPSQLRQPLCQPCCCPHCPRHKGQGMGEQAHEQ FT EAQDVQDVQKPRCS" FT gene 307..1077 FT /gene="AV1" FT CDS 307..1077 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:L0ELW2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:L0ELW2" FT /protein_id="AGA60290.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAVPTVRVTKARAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNLHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1074..1478) FT /gene="AC3" FT CDS complement(1074..1478) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /db_xref="GOA:L0EKQ8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L0EKQ8" FT /protein_id="AGA60294.1" FT /translation="MDSRTGEPITAAQAENSVLIWEITNPLYFKITEHHSRPFLRNQDI FT ITVQIRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVYEFLNNFAVISINN FT VIRAVDHVLWNVLAQTIHVQSSNIIKFNLY" FT gene complement(1219..1623) FT /gene="AC2" FT CDS complement(1219..1623) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /db_xref="GOA:L0EJ64" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L0EJ64" FT /protein_id="AGA60293.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRIDLDCDCSYFIALR FT CHGYGFTHRGTHHCSSSREFRAYLGDNKSPIFQDNRAPQQAIPEEPRHHHRADTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1526..2611) FT /gene="AC1" FT CDS complement(1526..2611) FT /codon_start=1 FT /gene="AC1" FT /product="REP" FT /db_xref="GOA:L0EL77" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L0EL77" FT /protein_id="AGA60292.1" FT /translation="MAPPKRFQIYAKNYFLTYPQCSLTKEEALSQLQKLSTPTNKLFIR FT VSRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRPAHFHPNIQGAKSSSDVKAYV FT EKDGDFIDFGVFQVDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDFVLQFH FT NLNANLDRIFTPPLEVYVSPFCSSSFDQVPEELEEWAAENVLGAAARPLRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL FT YSGSNQSAAQAGQEGDQASSD" FT gene complement(2161..2460) FT /gene="AC4" FT CDS complement(2161..2460) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L0ELW7" FT /protein_id="AGA60295.1" FT /translation="MKMGNLIYTSSYNSKVNSNAKTTDSSTSFPQPGQHISIRTFRELK FT ARQMSRPMWRKTETSLILEFSRSMEDQLEEVSSLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2763 BP; 746 A; 558 C; 638 G; 821 T; 0 other; accggatggc cgcgattttt tttaacgtgg tccccacaac gcacgtgctg acaaagacat 60 gtgcaccaat taaaatcgtc cctcatcgct taattatttc atggtcccct atttaaactt 120 ggtccccaag tagtgcactc tttccaatgt gggatccatt agtaaacgag tttcccgaaa 180 ccgttcacgg ttttaggtgt atgttagcag ttaaatatct gcagctacta gaaaatacat 240 attctccaga cactgttggg tacgatttaa tcagggattt aatctctgtt attagggcta 300 agaattatgt ccaagcgacc agcagatata atcatttcca cgcccgcctc gaaggtacgc 360 cgccgtctca acttcgacag cccttatgcc agccgtgctg ctgtccccac tgtccgcgtc 420 acaaaggcca gggcatgggc gaacaggccc atgaacagga agcccaggat gtacaggatg 480 tacagaagcc cagatgttcc tagggggtgt gaaggcccat gtaaggtcca gtcctttgag 540 tctagacacg atgtagtgca tatagggaag gttatgtgta ttagtgatgt tacccgtggt 600 actgggttaa cccatagagt aggtaagcgt ttctgtgtta agtctgtgta tgtattaggg 660 aagatatgga tggatgagaa tatcaagact aagaatcaca cgaatagtgt gatgtttttt 720 cttgtccgtg atcgtcgtcc tgttgataaa ccacaagatt ttggagaggt gtttaacatg 780 tttgacaacg agcctagcac tgccactgtg aagaatttgc atagagatcg ttatcaggtt 840 ttgaggaaat ggcacgcaac ggttactggt ggacagtacg cgtcgaagga acaggcatta 900 gttaagaagt tcgttagggt taataattat gttgtgtata accagcagga agctggtaaa 960 tatgagaatc atactgagaa tgcattgatg ttgtacatgg cgtgtactca cgcctctaat 1020 cctgtgtatg ctaccttaaa gatacggatc tatttctatg attcagtatc gaattaataa 1080 agattgaatt ttattatatt tgaactttgt acatgaattg tttgtgctaa tacattccat 1140 aatacatggt cgacagctct aattacattg tttatgctaa ttacagcaaa attatttaaa 1200 aactcataca cttgggtcct aaataccctt aagaaatgac cagtctgagg ctgtaaggtc 1260 gtccagattc ggaaggttag aaaacatttg tgtatcccca acgctttcct caggttgtga 1320 ttgaaccgta tctgcacggt gatgatgtct tggttcctca ggaatggcct gctgtggtgc 1380 tctgttatct tgaaatatag gggatttgtt atctcccaga taagcacgga attctctgct 1440 tgagctgcag tgatgggttc ccctgtgcgt gaatccatat ccgtggcagc gtaatgcgat 1500 gaaatatgaa cagtcgcagt ctaggtcaat ccgacgacgc ctggtcccct tcttggccag 1560 cctgtgctgc actttgattg gaacctgagt agagtgggcc ttcgagggtg atgaaggtcg 1620 cattctttaa agcccaattt ttgagtgcgc tatttttctc ttcatccaag aactctttat 1680 agctggaatt gggtcctgga ttgcagagga agatagcggg aattccacct ttaatttgaa 1740 ctggctttcc gtatttagtg tttgattgcc agtccctttg ggcccccatg aattctttaa 1800 agtgctttag gtagtgagga tctacgtcat caatgacgtt gtaccaggcg tcattactgt 1860 agacctttgg gctaaggtcg agatgtccac acaaatagtt gtgtggacct aatgacctgg 1920 cccacatagt cttccccgtc ctactatcac cctctatgac aatacttatg ggtcttaacg 1980 gccgcgcagc ggcaccgaga acattctcgg cagcccattc ctcaagttcc tcgggaactt 2040 gatcaaaaga agaagaacaa aaaggagaaa cataaacctc caagggaggt gtaaaaatcc 2100 tatctaaatt agcatttaaa ttatgaaatt gtaatacaaa atctttggga gctttctccc 2160 ttaatatatt gagggccgca gctttggacc ctgaattgat tgcctcggca tatgcgtcgt 2220 tggcagactg ctgacctcct ctagctgatc ttccatcgac ctggaaaact ccaaaatcaa 2280 tgaagtctcc gtctttctcc acataggcct tgacatctga cgagctttta gctccctgaa 2340 tgttcggatg gaaatgtgct ggcctggttg gggaaacgag gtcgaagaat ctgttgtttt 2400 ggcatttgaa tttaccttcg aattgtatga ggacgtgtaa atgaggttcc ccattttcat 2460 gtaattctcg agaaacccgg atgaataatt tattagtggg ggtgcttagt ttttgaagtt 2520 gggaaagtgc ttcttcttta gtgagggaac actgtggata agttaagaaa taatttttag 2580 catatatttg aaaacgtttt ggaggagcca ttttgacttg gtcaatcggt actcaacaaa 2640 cttggctatg caatcggtga atggtactca atatatagtg tgagtaccaa atggcatatt 2700 ggtaattttg gaataaaatt caaaattcaa aatccgacaa aagcggccat ccgcactaat 2760 att 2763 //