ID JN663865; SV 1; circular; genomic DNA; STD; VRL; 2749 BP. XX AC JN663865; XX DT 02-JAN-2013 (Rel. 115, Created) DT 02-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Chilli leaf curl Multan virus isolate Nagpur segment DNA-A, complete DE sequence. XX KW . XX OS Chilli leaf curl Multan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2749 RA Vinothkumar R., Singh A.K., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2749 RA Vinothkumar R., Singh A.K., Chakraborty S.; RT ; RL Submitted (09-SEP-2011) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Mehrauli Road, New Delhi, Delhi 110067, India XX DR MD5; b95abecc13c99de45cc5e38e8baa56a7. XX FH Key Location/Qualifiers FH FT source 1..2749 FT /organism="Chilli leaf curl Multan virus" FT /segment="DNA-A" FT /host="chilli" FT /isolate="Nagpur" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="S Chakraborty" FT /collection_date="14-Dec-2009" FT /clone="BamH I-5" FT /db_xref="taxon:546025" FT gene 149..514 FT /gene="AV2" FT CDS 149..514 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:L0ELV8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:L0ELV8" FT /protein_id="AGA60285.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHSRLEGTPPSQLRQPICQPCCCPHCPRHKVKSMGQQAHES FT EAQDVQDVQEPRCSKRM" FT gene 309..1079 FT /gene="AV1" FT CDS 309..1079 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:L0EKP9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:L0EKP9" FT /protein_id="AGA60284.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKSRAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPNDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1076..1480) FT /gene="AC3" FT CDS complement(1076..1480) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /db_xref="GOA:L0EJ61" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L0EJ61" FT /protein_id="AGA60288.1" FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFFRNRDI FT INVQIRFNQNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLRVLNNFAVISINN FT VIRAADHVLWNVLQHTVYVQQSYSIKFNLY" FT gene complement(1221..1625) FT /gene="AC2" FT CDS complement(1221..1625) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /db_xref="GOA:L0EL69" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L0EL69" FT /protein_id="AGA60287.1" FT /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPQQAILPEPRHHQRADTVQSKP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1528..2613) FT /gene="AC1" FT CDS complement(1528..2613) FT /codon_start=1 FT /gene="AC1" FT /product="REP" FT /db_xref="GOA:L0EKG8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L0EKG8" FT /protein_id="AGA60286.1" FT /translation="MPRAGRFNINAKNYFLTYPNCSLSKEEALSQLQNLETPVNKLYIR FT VCRELHENGEPHLHVLLQFEGKYQCTNNRFFDLISSSRSAHFHPNIQRAKSSSDVKAYV FT EKDGDFIDFGVFQIDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFH FT NLNANLDRIFTPPLEVYVSPFCSSSFDQVPGELEVWAAENVVGAAARPLRPMSIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFFTLAGPL FT YSGSNQSAAQAGQEGDQASSR" FT gene complement(2163..2456) FT /gene="AC4" FT CDS complement(2163..2456) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L0EKQ4" FT /protein_id="AGA60289.1" FT /translation="MGNLIYTCSSNSRENINAQTTDSSTSFPHPGQHISIRTFRELRAL FT QMSKPTWKKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPSPRPSIF" XX SQ Sequence 2749 BP; 753 A; 578 C; 631 G; 787 T; 0 other; accggatggc cgcgattttt tttaccatgg tccccaccac acgcactaac ggacaaatac 60 acgtggacca atgaaattgg ctcctcgttg cttaattatt gaatggtcct ctatataaac 120 ttggtcccca agtagtgcac tctttccaat gtgggatcca ttagtaaacg agtttcctga 180 aaccgttcac ggttttaggt gtatgttagc cgttaaatat ctgcagttag tagaaaatac 240 gtattctcca gatactctgg ggtacgattt aatcagggat ttaatttcag ttattagggc 300 tagaaattat gtcgaagcga ccagcagata taatcatttc cactcccgcc tcgaaggtac 360 gccgccgtct caacttcgac agcccatatg ccagccgtgc tgctgccccc attgtccgcg 420 tcacaaagtc aagagcatgg gccaacaggc ccatgaatcg gaagcccagg atgtacagga 480 tgtacaggag cccagatgtt ccaagaggat gtgaaggccc atgtaaggtc cagtcgtttg 540 agtctagaca cgatgtagtt catataggca aggtcatgtg tattagtgat gttacccgtg 600 gtactgggtt aacccataga gtaggtaagc gcttctgtgt taagtctgtg tatgtattag 660 ggaagatatg gatggatgag aatatcaaga ctaagaatca cacgaatagt gtgatgttct 720 tccttgtacg tgatcgtcgt ccaaatgata aaccacaaga ttttggagag gtgttcaaca 780 tgtttgacaa cgagcctagt actgcaactg tgaagaatat gcatagggat cgttatcagg 840 ttttgaggaa atggcacgca acggttaccg gtggacagta tgcttcgaag gaacaggcat 900 tagttaagaa gttcgttagg gttaacaatt atgttgtgta taaccagcag gaagctggga 960 aatatgaaaa tcacacagag aatgctctga tgttgtacat ggcatgtacc catgcctcta 1020 accctgtgta tgctactttg aagatacgga tctatttcta cgattcagta tcgaattaat 1080 aaagattgaa ttttattgaa tacgactgtt gtacatatac agtgtgttgt aatacattcc 1140 ataatacatg atcagctgcc ctaattacat tatttatgga aattacagca aaattattta 1200 aaacacgcaa cacttgggtc ctaaataccc ttaagaaatg accagtccga ggctgtaagg 1260 tcgtccagat tcggaaggtt agaaaacatt tgtgtatccc caacgctttc ctcaggtttt 1320 gattgaaccg tatctgcacg ttgatgatgt ctcggttccg gaagaatggc ctgttgtggt 1380 gctcggttat cttgaaatac aggggatttg ttatctccca gataaacacg ccattctctg 1440 cttgagctgc agtgatgggt tcccctgtgc gtgaatccat agccgtggca gcgtaatgcg 1500 atgaaatagg agcagccgca atctaggtca acgcgacgac gcctggtccc cttcttggcc 1560 agcctgtgct gcactttgat tggaacctga gtagagtggg cctgcgaggg tgaagaaggt 1620 cgcatttttt aaagcccaat gtttgagtgc ggaattcttc tcctcatcca agaactcttt 1680 atagctggaa ttgggtcctg gattgcagag gaagatagcg ggaattccac ctttaatttg 1740 aactggcttt ccgtatttcg tatttgattg ccagtccctt tgggccccca tgaattcttt 1800 aaagtgtttt agataatgcg gatcaacgtc atcaatgacg ttataccacg catcattgct 1860 gtacacctta gggctaaggt ctaggtgacc acataggtag ttatgtggac ccaatgacct 1920 agcccacatg gtcttccctg tacgactatc accctctagc acaatactca tgggtctcaa 1980 aggccgcgca gcggcaccca ccacattctc ggcagcccag acttcaagtt ctccaggaac 2040 ttgatcaaaa gaagaagaac aaaaaggaga aacataaacc tccaacggag gtgtaaaaat 2100 cctatctaaa ttagcattta aattgtgaaa ttgtaaaaca taatctttgg gagccttttc 2160 ccttaaaata ttgagggccg aggacttgga ccctgaattg attgcctcgg catatgcgtc 2220 gttggcagat tggcaacctc ctctagctga tctgccatcg atctggaaaa ctccaaagtc 2280 aatgaagtct ccgtcttttt ccacgtaggc tttgacatct gaagagctct tagctctctg 2340 aatgttcgga tggaaatgtg ctgaccggga tgaggaaatg aggtcgaaga atctgttgtt 2400 tgtgcattga tattttccct cgaattggag gagcacgtgt agatgaggtt ccccattctc 2460 gtgcaattct ctgcaaaccc taatatataa tttattaact ggagtttcta agttttgtaa 2520 ttgggaaagg gcctcttctt tactaagaga gcaattggga taagttagga aataattttt 2580 tgcatttata ttgaatctgc cagcacgagg cattttggtg gacactctaa ttctctgtaa 2640 tcggtggaat gggggacctt atatatggtg tccaccatat ggcatacttg taattaccat 2700 gtaagttcca atcaatttcc cgccaatcgc ggccatccgc attaatatt 2749 //