ID JN663864; SV 1; circular; genomic DNA; STD; VRL; 2755 BP. XX AC JN663864; XX DT 02-JAN-2013 (Rel. 115, Created) DT 02-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Pepper leaf curl Lahore virus isolate Nagpur segment DNA-A, complete DE sequence. XX KW . XX OS Pepper leaf curl Lahore virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2755 RA Vinothkumar R., Singh A.K., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2755 RA Vinothkumar R., Singh A.K., Chakraborty S.; RT ; RL Submitted (09-SEP-2011) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Mehrauli Road, New Delhi, Delhi 110067, India XX DR MD5; 353300a94184176a824357ab81c9287d. XX FH Key Location/Qualifiers FH FT source 1..2755 FT /organism="Pepper leaf curl Lahore virus" FT /segment="DNA-A" FT /host="chilli" FT /isolate="Nagpur" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="S Chakraborty" FT /collection_date="14-Dec-2009" FT /clone="BamH I-4" FT /db_xref="taxon:884610" FT gene 150..506 FT /gene="AV1" FT CDS 150..506 FT /codon_start=1 FT /gene="AV1" FT /product="pre-coat protein" FT /db_xref="GOA:L0EJ54" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:L0EJ54" FT /protein_id="AGA60278.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDL FT ITVIRARNYVEATSRYNHFHSRLEGTPPSQLRQPICQPCCCPHCPRHKVKSMGQQAHES FT EAQDVQDVQEPRCS" FT gene 310..1080 FT /gene="AV2" FT CDS 310..1080 FT /codon_start=1 FT /gene="AV2" FT /product="coat protein" FT /db_xref="GOA:L0EKP6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:L0EKP6" FT /protein_id="AGA60279.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKSRAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVLFFVVRDRRPTDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYXVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1077..1481) FT /gene="AC3" FT CDS complement(1077..1481) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /db_xref="GOA:L0EL66" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L0EL66" FT /protein_id="AGA60282.1" FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITDHHNRPFLRNHDI FT LTVQIQFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLRVLNNFAVISINN FT VIRAVDHVLWNILQHTVYVQQSYSIKFNLY" FT gene complement(1222..1626) FT /gene="AC2" FT CDS complement(1222..1626) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /db_xref="GOA:L0EKG5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L0EKG5" FT /protein_id="AGA60281.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREWRVYLGNNKSPVFQDNRPPQQAIPEEPRHPHRADTVQSQP FT KESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1529..2614) FT /gene="AC1" FT CDS complement(1529..2614) FT /codon_start=1 FT /gene="AC1" FT /product="REP" FT /db_xref="GOA:L0ELV3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L0ELV3" FT /protein_id="AGA60280.1" FT /translation="MTRTHQFQVKAKNIFLTYPKCPIPKEQMLEILKSINCPSDKLFIR FT VSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPSNTAQFHPNFQGAKSSSDVKSYI FT EKDGDYIDWGSFQIDGRSARGGQQTANHAAAEALNAGSAEAALAIIREKLPKDFIFQYH FT NLKSNLDRIFTPPLEVYVSPFCSSSFDQVPVELEVWAAENVVSAAARPLRPMSIVIEGD FT SRTGKSMWARSLGPHNYLCGHLDLSPKVYSNDACYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLQGPL FT YSGSNQSAAQAGQEGDQASSR" FT gene complement(2200..2457) FT /gene="AC4" FT CDS complement(2200..2457) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L0EJ58" FT /protein_id="AGA60283.1" FT /translation="MGACISTRSSNSKVNPSSETLDISMSLTLVTPPNSTQTSRELSPA FT QMSSPTSRRTVITSTGVAFRSMEDLLEEVNRQLITLQQRP" XX SQ Sequence 2755 BP; 742 A; 566 C; 650 G; 796 T; 1 other; accggatggc cgcgatttgt ttttaccatg gtccccacca cacgcactaa cggacaaata 60 cacgtggacc aatgaaattg gctcctcgtt gcttaattat tgaatggtcc cctatataaa 120 cttggtgccc aagtagtgca ctctttccaa tgtgggatcc attagtaaac gagtttcctg 180 aaaccgttca cggttttagg tgtatgttag ccgttaaata tctgcagcta gtagaaaata 240 cgtattctcc agatactctg gggtacgatt taatcaggga tttaattaca gttattaggg 300 ctagaaatta tgtcgaagcg accagcagat ataatcattt ccactcccgc ctcgaaggta 360 cgccgccgtc tcaacttcga cagcccatat gccagccgtg ctgctgcccc cattgtccgc 420 gtcacaaagt caagagcatg ggccaacagg cccatgaatc ggaagcccag gatgtacagg 480 atgtacagga gcccagatgt tcctagggga tgtgaaggcc catgtaaggt ccagtcgttt 540 gagtctagac acgatgtagt tcatataggg aaggtcatgt gtattagtga tgtcacccgt 600 ggtactgggt taacccatag agtaggtaag cgcttctgtg ttaagtccgt gtatgtatta 660 gggaagatat ggatggatga gaatatcaag actaagaatc acacgaatag tgtgttgttc 720 ttcgttgtac gtgatcgtcg tccaactgat aaaccacaag attttggaga ggtgttcaac 780 atgtttgaca acgagcctag cactgcaact gtgaagaata tgcataggga tcgttatcas 840 gttttgagga aatggcacgc aacggttacc ggtgggcagt atgcttcgaa ggaacaggca 900 ttagttaaga agttcgttag ggttaacaat tatgttgtgt ataaccagca ggaagctggg 960 aaatatgaaa atcacacaga gaatgctctg atgttgtaca tggcatgtac ccatgcctct 1020 aaccctgtgt atgcgacttt gaagatacgg atctacttct acgattcagt atcgaattaa 1080 taaagattga attttattga atacgactgt tgtacatata cagtgtgttg taatatattc 1140 cataatacgt gatcaactgc cctaattaca ttatttatgg aaattacagc aaaattattt 1200 aaaacacgca acacttgggt cctaaatacc cttaagaaat gaccagtccg aggctgtaag 1260 gtcgtccaga ttcggaaggt tagaaaacat ttgtgtatcc ccaacgcttt ccttaggttg 1320 tgattgaact gtatctgcac ggtgaggatg tcgtggttcc tcaggaatgg cctgttgtgg 1380 tggtcggtta tcttgaaata caggggattt gttatttccc agataaacac gccattctct 1440 gcttgagctg cagtgatggg ttcccctgtg cgtgaatcca tagccgtggc agcgtaatgc 1500 gatgaaatag gagcagccgc agtctaggtc aacgcgacga cgcctggtcc ccttcttggc 1560 cagcctgtgc tgcactttga ttggaacctg agtagagtgg gccttggagg gtgatgaagg 1620 tcgcattctt taaagcccaa ttctttagtg cggaattctt ctcttcatcc aagaactctt 1680 tatagcttga attgggtcct ggattgcaga ggaagatagc gggaattcca cctttaattt 1740 gaactggctt tccgtatttc gtatttgatt gccagtccct ttgggccccc atgaattctt 1800 taaagtgctt taggtaatgc ggatcaacgt catcaatgac gttataacat gcatcattgc 1860 tgtacacctt agggctaagg tctaggtgac cacataggta gttatgtgga cccaatgacc 1920 tagcccacat gctcttccct gtacgactat caccctcaat cacaatactc atgggtctca 1980 aaggccgcgc agcggcactc accacgttct cggcagccca gacttcaagt tctacaggaa 2040 cttgatcaaa agaagaagaa caaaaaggag aaacataaac ctccaacgga ggtgtaaaaa 2100 tcctatctaa attagacttc aaattatgat attgaaaaat aaaatctttg ggtagttttt 2160 cccttattat tgctaaagca gcttcagctg aaccggcatt taaggcctct gctgcagcgt 2220 gattagctgt ctgttgacct cctctagcag atcttccatc gatctgaaag ctaccccagt 2280 cgatgtaatc accgtccttc tcgatgtagg acttgacatc tgagctggac ttagctccct 2340 ggaagtttgg gtggaattgg gcggtgttac tagggtgagt gacatcgaaa tgtctagggt 2400 ttcggaactg ggatttacct ttgaattgga tgagcgcgtg gatatgcaag ctcccatctt 2460 ggtgtttttc ttgtgatact ctgataaata atttatcaga agggcaattt atagatttta 2520 gaatttctag catttgttct ttgggtattg ggcatttagg ataagtgagg aagatatttt 2580 ttgcttttac ttggaattgg tgtgtacgtg tcatattgaa ttgggagctc ttcaaaactc 2640 tacggaatgg ggtgctttgg gagcctattt ataccgagct cccaaatggc attcaggtaa 2700 tttcggggaa atttccaaaa aagatcccgc caaaagcggc catccgtata atatt 2755 //