ID JN663861; SV 1; circular; genomic DNA; STD; VRL; 2750 BP. XX AC JN663861; XX DT 02-JAN-2013 (Rel. 115, Created) DT 02-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Pepper leaf curl Varanasi virus isolate Jorehat segment DNA-A, complete DE sequence. XX KW . XX OS Pepper leaf curl Varanasi virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2750 RA Vinothkumar R., Singh A.K., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2750 RA Vinothkumar R., Singh A.K., Chakraborty S.; RT ; RL Submitted (09-SEP-2011) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Mehrauli Road, New Delhi, Delhi 110067, India XX DR MD5; 8640fb3de338861b091406112f75733b. XX FH Key Location/Qualifiers FH FT source 1..2750 FT /organism="Pepper leaf curl Varanasi virus" FT /segment="DNA-A" FT /host="chilli" FT /isolate="Jorehat" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="U K Phukan" FT /collection_date="16-Jul-2009" FT /clone="BamH I-3" FT /db_xref="taxon:1219878" FT gene 142..507 FT /gene="AV2" FT CDS 142..507 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:L0EJ50" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:L0EJ50" FT /protein_id="AGA60273.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDL FT ITVIRAKNYVEATSRYNHFHSRLEGTPPSQLRQPICQPCCCPHCPRHKGQSMGQQAHES FT EAQDVQDVQEPRCSKGM" FT gene 302..1072 FT /gene="AV1" FT CDS 302..1072 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:L0EL54" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:L0EL54" FT /protein_id="AGA60272.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPNDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYDNH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1069..1473) FT /gene="AC3" FT CDS complement(1069..1473) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /db_xref="GOA:L0EKF9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L0EKF9" FT /protein_id="AGA60276.1" FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFFRNRDI FT INVQIRFNQNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLRVLNNFAVISINN FT VIRAADHVLWNVLQHTVYVQQSYSIKFNLY" FT gene complement(1214..1618) FT /gene="AC2" FT CDS complement(1214..1618) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /db_xref="GOA:L0ELU8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L0ELU8" FT /protein_id="AGA60275.1" FT /translation="MRPSSPSRAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPQQAILPEPRHHQRADTVQSKP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1521..2606) FT /gene="AC1" FT CDS complement(1521..2606) FT /codon_start=1 FT /gene="AC1" FT /product="REP" FT /db_xref="GOA:L0EKP3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L0EKP3" FT /protein_id="AGA60274.1" FT /translation="MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIR FT VCRELHENREPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYV FT EKDGDFIDFGVFQIDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFH FT NLNANLDRIFTPPLEVYVSPFSSSSFDQVPEELEEWAAENVLGAAARPLRPMSIVIEGE FT SRTGKTIWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALRNWALKNATFITLEGPL FT YSGSNQSAAQASQEGDQASTR" FT gene complement(2156..2455) FT /gene="AC4" FT CDS complement(2156..2455) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L0EL60" FT /protein_id="AGA60277.1" FT /translation="MRIGNLIYTCSSNSRENTNAQTTDSSTLFPQPGQHISIRTFRELK FT ALQMSKPMWRKTETSLTLEFSKSMADQLEEVANLPTTHMPRQSIQGPSLRPSIF" XX SQ Sequence 2750 BP; 750 A; 576 C; 635 G; 789 T; 0 other; accggatggc cgcgattttt ttaaccgtgg gccccaccac gcacgtgctg acaaagacat 60 gtgcaccaat taaaatcgtc cctcatagct taattatttc atggtccccc tttaaacttg 120 gttagtgcac tttcctttcc aatgtgggat ccattattaa acgagttccc tgaaaccgtt 180 cacggtttta ggtgtatgtt agccgttaaa tatctgcagc tagtagaaaa tacgtattct 240 ccagatactc tggggtacga tttaatcagg gatttaatta cagttattag ggctaagaat 300 tatgtcgaag cgaccagcag atataatcat ttccactccc gcctcgaagg tacgccgccg 360 tctcaacttc gacagcccat atgccagccg tgctgctgcc cccattgtcc gcgtcacaaa 420 ggccagagca tgggccaaca ggcccatgaa tcggaagccc aggatgtaca ggatgtacag 480 gagcccagat gttccaaggg gatgtgaagg cccatgtaag gtccagtcgt ttgagtctag 540 acacgatgta gttcatatag ggaaggtcat gtgtattagt gatgtcaccc gtggtactgg 600 gttaacccat agagtaggta aacgtttctg tgttaagtcc gtgtatgtat tagggaagat 660 atggatggat gagaatatca agactaagaa tcacacgaat agtgtgatgt tcttccttgt 720 acgtgatcgt cgtccaaatg ataaaccaca agattttgga gaggtgttca acatgtttga 780 caacgagcct agtactgcaa ctgtgaagaa tatgcatagg gatcgttatc aggttttgag 840 gaaatggcac gcaacggtta ccggtggaca gtatgcttcg aaggaacagg cattagttaa 900 gaagttcgtt agggttaaca attatgttgt gtataaccag caggaagctg ggaaatatga 960 caatcacaca gagaatgctc tgatgttgta catggcatgt acccatgcct ctaaccctgt 1020 gtatgctact ttgaagatac ggatctattt ctacgattca gtatcgaatt aataaagatt 1080 gaattttatt gaatacgact gttgtacata tacagtgtgt tgtaatacat tccataatac 1140 atgatcagct gccctaatta cattatttat ggaaattaca gcaaaattat ttaaaacacg 1200 caacacttgg gtcctaaata cccttaagaa atgaccagtc cgaggctgta aggtcgtcca 1260 gattcggaag gttagaaaac atttgtgtat ccccaacgct ttcctcaggt tttgattgaa 1320 ccgtatctgc acgttgatga tgtctcggtt ccggaagaat ggcctgttgt ggtgctcggt 1380 tatcttgaaa tacaggggat ttgttatctc ccagataaac acgccattct ctgcttgagc 1440 tgcagtgatg ggttcccctg tgcgtgaatc catagccgtg gcagcgtaat gcgatgaaat 1500 aggagcagcc gcaatctagg tcaacgcgtc gacgcctggt ccccttcttg gctagcctgt 1560 gctgcacttt gattggaacc tgagtagagt gggccctcga gggtgatgaa ggtcgcattc 1620 tttaaagccc aatttctgag tgcgctattt ttctcttcat ccaagaactc tttatagctg 1680 gaattgggtc ctggattgca gaggaagata gcgggaattc cacctttaat ttgaactggc 1740 tttccgtatt tagtgtttga ttgccagtcc ctttgggccc ccatgaattc tttaaagtgc 1800 tttaggtagt ggggatcgac gtcatcaatg acgttgtacc aggcgtcatt actatagacc 1860 tttgggctaa ggtctagatg tccacacaaa tagttgtgtg gacccaatga cctggcccat 1920 atcgtcttcc ccgtcctact ctcaccctct atgacaatac tcatgggtct taaaggccgc 1980 gcagcggcac cgagaacatt ctcggcagcc cattcctcaa gttcctcggg aacttgatca 2040 aaagaagaag aagaaaaagg agaaacataa acctccaacg gaggtgtaaa aatcctatct 2100 aaattagcat ttaaattatg aaattgtaaa acataatctt tgggagcttt ctcccttaaa 2160 atattgaggg ccgaagactt ggaccctgaa ttgattgcct cggcatatgc gtcgttggca 2220 gattggcaac ctcctctagc tgatctgcca tcgatttgga aaactccaaa gtcaatgaag 2280 tctccgtctt tctccacata ggctttgaca tctgaagagc ttttagctct ctgaatgttc 2340 ggatggaaat gtgctgacct ggttggggaa ataaggtcga agaatcggtt gtttgtgcat 2400 tggtattttc cctcgaattg gacgagcacg tgtagatgag gttccctatt ctcatgcaat 2460 tctcggcaaa ccctaataaa taatttatta actggggttt ccaagttttg taattgggaa 2520 agtgcctctt ccttagtgag agagcagttg ggatatgtga ggaaataatt tttggcgttt 2580 atattgaatc tcccagccct aggcattttg gtggacactc aaacttacta tgtaatcggt 2640 ggaatggggg acaatatata tgtgtccacc aatggcaaat tggtaattag tgtcatctca 2700 aaaaattcaa aattcaaatt ccgacaaaag cggccatccg cattaatatt 2750 //