ID JN663852; SV 1; circular; genomic DNA; STD; VRL; 2760 BP. XX AC JN663852; XX DT 02-JAN-2013 (Rel. 115, Created) DT 02-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Chilli leaf curl virus-India isolate Chhapra segment DNA-A, complete DE sequence. XX KW . XX OS Chilli leaf curl virus-India OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2760 RA Vinothkumar R., Singh A.K., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2760 RA Vinothkumar R., Singh A.K., Chakraborty S.; RT ; RL Submitted (09-SEP-2011) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Mehrauli Road, New Delhi, Delhi 110067, India XX DR MD5; f155d464060ea4b6a3d4033f207392af. XX FH Key Location/Qualifiers FH FT source 1..2760 FT /organism="Chilli leaf curl virus-India" FT /segment="DNA-A" FT /host="chilli" FT /isolate="Chhapra" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="A K Singh" FT /collection_date="13-Jan-2010" FT /clone="BamH I-2" FT /db_xref="taxon:1219876" FT gene 145..501 FT /gene="AV2" FT CDS 145..501 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:L0ELS7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:L0ELS7" FT /protein_id="AGA60255.1" FT /translation="MWDPLVNDFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIFQPCCCPHCPRHQSKSMGEQAHEQ FT EAQDVQDVQKPRCA" FT gene 305..1075 FT /gene="AV1" FT CDS 305..1075 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:L0EKM6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:L0EKM6" FT /protein_id="AGA60254.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1072..1476) FT /gene="AC3" FT CDS complement(1072..1476) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /db_xref="GOA:L0EJ39" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L0EJ39" FT /protein_id="AGA60258.1" FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRNQDI FT ITVQIRFNHNLRRALGIHQCFLTFRIWTTLQPRTGHFLRVFRTQVLRFLNNFAVISINN FT VIRAVDHVLWNVLAQTIHVQSSNIIKFNIY" FT gene complement(1217..1621) FT /gene="AC2" FT CDS complement(1217..1621) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /db_xref="GOA:L0EL38" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L0EL38" FT /protein_id="AGA60257.1" FT /translation="MRPSSPSRAHSTQVPIKVQHRLAKRGTRRRRVDLDCGCSYFIALR FT CHGHGFTHRGTHHCSSGREWRVYLGDNKSTVFQDNRAPQPAIPEEPRHHHRADTVQSQP FT EESVGDTPMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1524..2609) FT /gene="AC1" FT CDS complement(1524..2609) FT /codon_start=1 FT /gene="AC1" FT /product="REP" FT /db_xref="GOA:L0EKD7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L0EKD7" FT /protein_id="AGA60256.1" FT /translation="MPQPKRFQIYAKNYFLTYPQCSLTKEEALSQLQNLSTPTNKLFIR FT VSRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSPRRPAHFHPNIQGAKSSSDVKAYV FT EKDGDFIDFGVFQVDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKNYVLQFH FT NLNANLDRIFTPPLEVYVSPFCSSSFDQVPEELEEWAAENVVSAAARPLRPVSIVVEGE FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL FT YSGSNQSAAQAGEEGDQASSS" FT gene complement(2159..2458) FT /gene="AC4" FT CDS complement(2159..2458) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L0EKN0" FT /protein_id="AGA60259.1" FT /translation="MKMGNLICTSSYNSKVNSNARTTDSSTSFPQEGQHISIRTFRELK FT ARQMSRPMWRKTETSLILEFSRSMEDQLEEVSSLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2760 BP; 744 A; 600 C; 633 G; 783 T; 0 other; accggatggc cgcgattttt ttttgtgggc cccacaacac acgtgctgac aaggacaagt 60 gaaccaatta gaaactcccc tcaaagctta attattcact ggtcccctat ataaactttg 120 tccccaagta ttgcacacat accaatgtgg gatccgttag taaacgactt tcctgaaacc 180 gttcacggtt ttaggtgtat gctagccgtt aaatatcttc agctagtaga aaagacgtat 240 tctccagaca ctctcggtta cgatttaatc cgggatctaa tttcagtcat cagggctaga 300 aattatgtcg aagcgaccag cagatataat catttccacg cccgcctcga aggtacgccg 360 ccgtctcaac ttcgacagcc catattccag ccgtgctgct gcccccattg tccgcgtcac 420 caaagcaaaa gcatgggcga acaggcccat gaacaggaag cccaggatgt acaggatgta 480 cagaagccca gatgtgccta gaggatgtga aggcccatgt aaggtccagt cctttgagtc 540 cagacatgat gtccaacaca ttggtaaagt catgtgtgtt agtgatgtta cgcgtggaac 600 tgggctgacc catcgagtgg gtaaaaggtt ttgtgttaag tccgtctatg tactggggaa 660 gatttggatg gatgagaaca tcaagactaa gaatcacacg aatagtgtta tgtttttcct 720 tgttagagat cgtaggcccg tagataagcc ccaagacttt ggtgaggtgt ttaacatgtt 780 tgataatgag cccagtactg ccaccgtaaa gaacgtgcat cgtgacaggt atcaggtgct 840 gaggaagtgg catgcaactg tgactggtgg tcaatatgca tcgaaggagc aagctctcgt 900 gaagaagttt attagggtta ataattatgt tgtgtataac cagcaagagg ctggcaagta 960 tgaaaaccat actgagaatg cattgatgtt gtacatggca tgtactcatg cctctaaccc 1020 tgtgtatgct actttgaaga tacggatcta tttctatgat tccgtaacaa attaataaat 1080 attgaatttt attatgtttg aactttgtac atgaattgtt tgcgctaata cattccacaa 1140 tacatgatcg actgctctaa ttacattgtt tatactaatt acagcaaaat tatttaaaaa 1200 ccgcaacact tgggtcctaa atacccttaa gaaatgacca gtccgaggct gtaaggtcgt 1260 ccagattcgg aaggttagaa aacattggtg tatccccaac gctctcctca ggttgtgatt 1320 gaaccgtatc tgcacggtga tgatgtcttg gttcctcagg aatggccggt tgtggtgctc 1380 ggttatcttg aaatacagtg gatttgttat ctcccagata aacacgccat tctctgcctg 1440 agctgcagtg atgggttccc ctgtgcgtga atccatggcc gtggcagcgt aatgcgatga 1500 aatatgaaca gccgcagtct aggtcaactc gacgacgcct ggtccccctc ttcgccagcc 1560 tgtgctgcac tttgattgga acctgagtag agtgggccct cgagggtgat gaaggtcgca 1620 ttctttaaag cccaattttt aagtgcggaa ttcttctctt catccaagaa ctctttatag 1680 ctggaattgg gtcctggatt gcagaggaag atagcgggaa ttccgccttt aatttgaact 1740 ggctttccgt attttgtatt ggattgccag tccctttggg cccccatgaa ttccttaaag 1800 tgctttaggt agtgcgggtc gacgtcatca atgacgttgt accaggcgtc attactatag 1860 acctttgggc taaggtctag atgtccacac aaatagttat gtggacccaa cgaccgagcc 1920 cacatcgtct tgcccgttct actttcgccc tctaccacta tactcacggg tctcaatggc 1980 cgcgcagcgg cactgacgac gttctcggca gcccattcct caagttcttc cggaacttga 2040 tcaaaagaag aagaacaaaa aggagaaaca taaacctcca acggaggtgt aaaaatccta 2100 tctaaatttg catttaaatt atgaaattgt aatacataat ttttgggagc tttctccctc 2160 aatatattga gggccgcagc tttggaccct gaattgattg cctcggcata tgcgtcgttg 2220 gcagactgct gacctcctct agctgatctt ccatcgacct ggaaaactcc aaaatcaatg 2280 aagtctccgt ctttctccac ataggccttg acatctgacg agcttttagc tccctgaatg 2340 ttcggatgga aatgtgctgg ccttcttggg gaaacgaggt cgaagaatct gttgttctgg 2400 catttgaatt taccttcgaa ttgtatgagg acgtgcagat gaggttcccc attttcatgt 2460 aattcacgag aaaccctgat gaataattta ttagtgggtg tgcttaggtt ttgaagttgg 2520 gaaagtgcct cttctttagt gagggaacac tgtggatatg ttaagaaata atttttagca 2580 tatatttgaa aacgtttcgg ttgaggcatg ttgacttggt caatcggtac tcaacaaact 2640 tggctatgca atcggtgaat ggtactcaat atatagttga gtaccgaatg gcacaactgt 2700 aattacggaa agtaattcaa aattcaaatt ccgacaaaag cggccatccg cactaatatt 2760 //