ID JN663846; SV 1; circular; genomic DNA; STD; VRL; 2762 BP. XX AC JN663846; XX DT 02-JAN-2013 (Rel. 115, Created) DT 02-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Chilli leaf curl virus-India isolate Ahmedabad segment DNA-A, complete DE sequence. XX KW . XX OS Chilli leaf curl virus-India OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2762 RA Vinothkumar R., Singh A.K., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2762 RA Vinothkumar R., Singh A.K., Chakraborty S.; RT ; RL Submitted (09-SEP-2011) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Mehrauli Road, New Delhi, Delhi 110067, India XX DR MD5; 508ba123f191cfca07fa8b0292495739. XX FH Key Location/Qualifiers FH FT source 1..2762 FT /organism="Chilli leaf curl virus-India" FT /segment="DNA-A" FT /host="chilli" FT /isolate="Ahmedabad" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="H Pandya" FT /collection_date="12-Aug-2009" FT /clone="Xba I-14" FT /db_xref="taxon:1219876" FT gene 146..502 FT /gene="AV2" FT CDS 146..502 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:L0EKM3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:L0EKM3" FT /protein_id="AGA60249.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLLENTYAPDTLGYDLIRDL FT ISVIRAKNYVQATSRYNHFHARLEGTPPSQLRQPLCQPCCCPHCPRHKGQSMGEQAHEQ FT EAQDVQDVQKPRCS" FT gene 306..1076 FT /gene="AV1" FT CDS 306..1076 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:L0EJ30" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:L0EJ30" FT /protein_id="AGA60248.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPTVRVTKARAWV FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1073..1477) FT /gene="AC3" FT CDS complement(1073..1477) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /db_xref="GOA:L0EL33" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L0EL33" FT /protein_id="AGA60252.1" FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRNQDI FT ITVQIRFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVYKYLNNFAVISINN FT VLRAVNHVLWNVLAQTIHVQSSNIIKFNLY" FT gene complement(1218..1622) FT /gene="AC2" FT CDS complement(1218..1622) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /db_xref="GOA:L0EKD3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L0EKD3" FT /protein_id="AGA60251.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKRGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSGREWRVYLGDNKSPVFQDNRAPQPAIPEEPRHHHRADTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1525..2610) FT /gene="AC1" FT CDS complement(1525..2610) FT /codon_start=1 FT /gene="AC1" FT /product="REP" FT /db_xref="GOA:L0ELS2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L0ELS2" FT /protein_id="AGA60250.1" FT /translation="MAPPKRFQIYAKNYFLTYPQCSLTKEEALSQLQNLSTPTNKLFIR FT VCRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRPAHFHPNIQGAKSSSDVKAYV FT EKNGDFIDFGVFQVDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDFVLQFH FT NLSANLDRIFTPPLEVYVCPFCSSSFDQVPEELEEWAAENVLGAAARPLRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL FT YSGSNQSAAQAGQEGDQASSS" FT gene complement(2160..2459) FT /gene="AC4" FT CDS complement(2160..2459) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L0EJ34" FT /protein_id="AGA60253.1" FT /translation="MKMGNLISTSSYNSKVNSNAKTTDSSTSFPQPGQHISIRTFRELK FT ARQMSRPMWKKTETSLILEFSKSMEDQLEEVSSLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2762 BP; 737 A; 570 C; 646 G; 809 T; 0 other; accggatggc cgcgattttt taaccgtggg ccccaccacg cacgtgctga caaagacatg 60 tgcaccaatt aaaatcgtcc ctcatagctt aattatttca tggtcccccc tataaacttg 120 ggctccaagt agtgcactct taccaatgtg ggatccatta gtaaacgagt ttcctgaaac 180 cgttcacggt tttaggtgta tgttagcagt taaatatctg cagctactag aaaatacata 240 tgctccagac acgctggggt acgatttaat cagggatttg atctccgtta ttagggctaa 300 gaattatgtc caagcgacca gcagatataa tcatttccac gcccgcctcg aaggtacgcc 360 gccgtctcaa cttcgacagc ccttatgcca gccgtgctgc tgcccccact gtccgcgtca 420 caaaggccag agcatgggtg aacaggccca tgaacaggaa gcccaggatg tacaggatgt 480 acagaagccc agatgttcct aggggttgtg aaggcccatg taaggtccag tcttttgagt 540 ctagacacga tgtagttcat atagggaagg ttatgtgtat tagtgatgtt acccgtggta 600 ctgggttaac ccatagagta ggtaagcgtt tttgtgttaa gtctgtgtac gtattaggga 660 agatatggat ggatgagaat atcaagacta agaatcacac gaatagtgtg atgtttttcc 720 ttgtccgtga tcgtcgtcct gttgataaac cacaagattt tggagaggtg ttcaacatgt 780 ttgacaacga gcctagcact gccactgtga agaatatgca tagagatcgt tatcaggttt 840 tgaggaaatg gcacgcaacg gttactggtg gacagtacgc gtcgaaggaa caggcattag 900 ttaagaagtt cgttagggtt aataattatg ttgtgtataa ccagcaggaa gctggtaaat 960 atgagaatca tactgagaat gcattgatgt tgtacatggc gtgtactcac gcctctaatc 1020 ctgtgtatgc taccttaaag atacggatct atttctatga ttcagtatcg aattaataaa 1080 gattgaattt tattatattt gaactttgta catgaattgt ttgtgctaat acattccata 1140 atacatggtt gacagctcta agtacattgt ttatactaat tacagcaaaa ttatttaaat 1200 acttatacac ttgtgtccta aataccctta agaaatgacc agtccgaggc tgtaaggtcg 1260 tccagattcg gaaggttaga aaacatttgt gtatccccaa cgctttcctc aggttgtgat 1320 tgaaccgtat ctgcacggtg atgatgtctt ggttcctcag gaatggccgg ttgtggtgct 1380 cggttatctt gaaatacagg ggatttgtta tctcccaaat aaacacgcca ttctctgcct 1440 gagctgcagt gatgggttcc cctgtgcgtg aatccatagc cgtggcagcg taatgcgatg 1500 aaatatgaac agccgcagtc taggtcaact cgacgacgcc tggtccccct cttggccagc 1560 ctgtgctgca ctttgattgg aacctgagta gagtgggcct tcgagggtga tgaaggtcgc 1620 attctttaaa gcccaatttt ttagtgcgct atttttctct tcatccaaga actctttata 1680 gctggaattg ggtcctggat tgcagaggaa gatagcggga attccacctt taatttgaac 1740 tggctttccg tattttgtgt tggattgcca gtccctttgg gcccccatga attccttaaa 1800 gtgctttagg tagtggggat cgacgtcatc aatgacgttg taccaggcgt cattactgta 1860 gacctttggg ctaaggtcga gatgtccaca caaatagttg tgtggaccta gtgacctggc 1920 ccacattgtc ttgcccgttc tactatcgcc ctctatcaca atacttatgg gtcttaatgg 1980 ccgcgcagcg gcaccgagaa cattctcggc agcccattct tcaagttcct ccggaacttg 2040 atcgaaagaa gaagaacaaa aaggacaaac ataaacctcc aacggaggcg taaaaatcct 2100 atctaaatta gcacttaaat tatgaaattg taatacaaaa tctttgggag ctttctccct 2160 taatatattg agggccgcag ctttggaccc tgaattgatt gcctcggcat atgcgtcgtt 2220 ggcagactgc tgacctcctc tagctgatct tccatcgact tggaaaactc caaaatcaat 2280 gaagtctccg tttttttcca cataggcctt gacatctgac gagcttttag ctccctgaat 2340 gttcggatgg aaatgtgctg gcctggttgg ggaaacgagg tcgaagaatc tgttgttttg 2400 gcatttgaat ttaccttcga attgtatgag gacgtggaga tgaggttccc cattttcatg 2460 taattcgcga caaaccctga tgaacaattt attagtgggg gtgcttaggt tttgaagttg 2520 ggaaagtgct tcttctttag tgagggaaca ctgtggatat gttaagaaat aatttttagc 2580 atatatttga aaacgttttg gaggagccat gttgacttgg tcaatcggta ctcaacaaac 2640 ttggctatgc aatcggtgaa tggtactcaa tatatagtgt gagtacgaaa tggcatgttc 2700 gtaattttga aggcaaattc aaaattcaac ttccgacaaa agcggccatc cgcactaata 2760 tt 2762 //