ID JN651149; SV 1; linear; genomic RNA; STD; VRL; 3935 BP. XX AC JN651149; XX DT 19-OCT-2011 (Rel. 110, Created) DT 24-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Blueberry necrotic ring blotch virus segment RNA2, complete sequence. XX KW . XX OS Blueberry necrotic ring blotch virus OC Viruses; Riboviria; Kitaviridae; Blunervirus. XX RN [1] RP 1-3935 RX DOI; 10.1099/vir.0.050393-0. RX PUBMED; 23486668. RA Quito-Avila D.F., Brannen P.M., Cline W.O., Harmon P.F., Martin R.R.; RT "Genetic characterization of Blueberry necrotic ring blotch virus, a novel RT RNA virus with unique genetic features"; RL J. Gen. Virol. 94(Pt 6):1426-1434(2013). XX RN [2] RP 1-3935 RA Martin R.R., Quito-Avila D.F., Cline W.O., Harmon P.F., Brannen P.M.; RT ; RL Submitted (06-SEP-2011) to the INSDC. RL Plant Pathology, USDA-ARS, Horticultural Crops Research Unit, Oregon State RL University, 3420NW Orchard, Corvallis, OR 97330, USA XX DR MD5; e8eb6e1eb618b805dca8037c7655a8fe. XX CC GenBank Accession Numbers JN651148-JN651151 represent sequences CC from the 4 segments of Blueberry necrotic ring blotch virus. XX FH Key Location/Qualifiers FH FT source 1..3935 FT /organism="Blueberry necrotic ring blotch virus" FT /segment="RNA2" FT /strain="Georgia" FT /mol_type="genomic RNA" FT /collection_date="2009" FT /db_xref="taxon:1094249" FT CDS 347..3781 FT /codon_start=1 FT /product="polymerase" FT /db_xref="GOA:G5DFC7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G5DFC7" FT /protein_id="AEQ55300.1" FT /translation="MSSSKPSTTGLMPPLANLTAWEKLFVPVFLSSAECMNDSYVKSLP FT DILRVERAYGIVSPIELEDHNHQQIRVAKRFEIYQALKNGKTLNSYGDIDVSKYMKITD FT FQVEDTEIMSPEDAFSWREDSKCNIIKRHEKLDKFKVLSDYLQECAMVVEQSLKDEVLF FT LVKDGVKIQGTGNELYESSIAYDFDQNKFVLPRTVDPLTAKNILVTAAMKNLIEERIIS FT HANLHIPKCELLISHGSAGSGKTNRLVQLATKLNPASVGIVTHSGYNRDHIKGLLRKRG FT VTTVRVETYDHFIRNPSHFDVLLLDECHLVHPGMLLTTMCLVKPQFAHGFADLSQCVYP FT LYPGSTRLPLYRIFRICEFINQSNTIPKCVMGKLGLHYNLHLRHHELVSTSQIVGSVVH FT HPVDSFNLVPLTPGTVVYCSDRDSDRKKILDIGSRKVKHLCLYLRNEIPLVELMYALTR FT FTESLTVYSAVNGDAHNFIKDVQCIDPDLSGGATIVYSEDEYLYDQPREFMPIVTVPRV FT QNMQLPEHWKGKNTLSIERADVRFPIVRAGKNAKLLLPHHLKINYAALVDVLSIAPVKD FT RGVFYKEDDFPQMMSFILNRAINKYYPIGIRQIAGIRNYATKEMAEVLIETPLEPVLEM FT ERVYGNGIVVDVPTSDITVEEPDELISPVQEFLNHYFTPNVNYTDKSTFAFDFHRGEFQ FT FPVDGVTYNNSVEPFRERNFDCLTPVLYSPCPLNQVSTPRHVLNSILKRNANVPRLTSL FT EDIAGQAEILVDRLFAICPGVDTSSLSVTVESIADWMKTQPDSVMGRLTDGNPLHCKPL FT DRYQFLLKSEPKPDLTVEALSKYPIPQSILCHSKDINAIFCPLIRTIRDRIMEKMDKKY FT QFFTKVDEEGFAEKMNRVFPADSAKFYYSYEFDMSKYDKSQGQLVLDFECALMRRLGVP FT EYIVGCWRVAHTRTRARDLTNKISFETVFQRKSGDASTYFGNTVILMIALLDVLPDEDV FT VFGAFSGDDSLIFSTRPPDKIDFKILSTRYNFEVKLFDFQYHYFCSKFVLNVNGRWVVT FT PDPLKRAVKLGRADLRNFDHVEEYRVSFIDNVKTYNNSAVVEKLSLAVMERYGSFHNPS FT LAIQCMYHLGKKKNFSSLFYHAAGDILCYDPSRPRLD" XX SQ Sequence 3935 BP; 1064 A; 823 C; 791 G; 1257 T; 0 other; cacaaattgt cactactact acgcaactca cattgcgtgc tcactaccta caacatcaag 60 ttgtgttcag cccctactgg ccattactac agaatttaag ttctttgaac ttaaattcat 120 tcactacgaa cttcggttca tccactactg aacttcggtt caatcactac gaaacttcgg 180 ttccatcact atcatcaaca ggttcattct tagtctgaac ctcggtttct cgctaccgtt 240 aacgtgctta actgacatta tatgggcggg aatcttacta tatttttcat aattctactt 300 actctatcac tcgtggtact gtttgtgtat acaacttgtt actacgatgt cttcttccaa 360 gccttccaca acgggtctta tgcctcctct ggcaaacttg actgcttggg agaaattatt 420 cgttcccgtg tttctaagct ccgcggaatg tatgaatgac tcttatgtta aatcattacc 480 agatattttg agagtcgaaa gagcttatgg gattgtatca ccaatcgaat tagaagacca 540 taatcaccaa cagattcgcg tggctaaaag gtttgaaatt tatcaggctc ttaaaaatgg 600 aaaaactctg aattcgtatg gtgatatcga cgtgtccaaa tatatgaaaa ttactgattt 660 tcaagtcgag gacaccgaaa taatgagtcc tgaagatgcg ttttcttggc gtgaagattc 720 taagtgtaat attattaaac gtcatgaaaa acttgacaaa ttcaaggtac tctcggatta 780 cttgcaggag tgtgccatgg tagttgaaca aagtctaaag gacgaggtat tgtttttggt 840 caaagacggt gtaaaaatcc agggaactgg taatgagctt tatgaaagca gtattgctta 900 cgactttgat caaaacaaat ttgtactccc acggactgtc gatccactca ctgcaaagaa 960 catccttgtt actgcagcta tgaaaaatct gatagaagag cgcataatct cccacgctaa 1020 tcttcacatt ccaaagtgtg aacttttgat ttcgcatggt agtgcaggtt cgggaaaaac 1080 aaatcgtcta gttcaattgg ctaccaaatt gaacccggct tcagttggta tagttactca 1140 ttcagggtac aatcgtgatc atatcaaggg actcttgcgc aaacgtggtg tgaccactgt 1200 ccgggtcgag acctatgacc atttcatccg caacccgtct cattttgatg ttttgttatt 1260 ggacgaatgt catttggttc accctggaat gttgttaacc accatgtgtt tggtgaaacc 1320 acaatttgca cacggttttg ctgatttgtc acagtgtgta tacccacttt atccgggatc 1380 tacgcggttg cctttgtacc gtattttccg aatctgcgag ttcatcaatc aaagtaacac 1440 aattccaaaa tgtgtcatgg gtaaactcgg cttgcactac aatttacacc ttcggcatca 1500 cgaattggtt agcacctctc aaattgttgg atccgttgtc caccatccgg tcgattcatt 1560 caacctggtt cctctgactc caggcactgt tgtttattgc tccgatcgcg attcggatcg 1620 gaagaagatt cttgatatcg gttcacggaa agttaaacac ctgtgcctgt atttgagaaa 1680 cgagatccca cttgtcgaat taatgtacgc attaacgaga ttcactgaat ccctaacagt 1740 ttactcagct gtcaatggtg atgcccacaa cttcataaaa gatgtgcaat gcatagatcc 1800 cgatttatcg ggtggtgcga ccattgttta ttccgaagat gagtatcttt atgatcaacc 1860 acgagagttt atgcctatag tgaccgtccc tcgagtgcaa aatatgcaac tccctgaaca 1920 ttggaaaggg aaaaatactt tgtctattga gcgtgctgat gtgcgattcc ctattgttcg 1980 tgccggtaag aatgccaaac tgctccttcc tcaccattta aaaatcaatt acgcagcttt 2040 ggtcgatgtg ttgtccattg ctcctgttaa agaccgaggt gtgttctata aggaagacga 2100 ctttcctcaa atgatgtctt ttatccttaa tcgcgctatc aacaagtatt atccgatcgg 2160 tataagacaa attgcaggaa ttcgtaatta tgcgaccaag gaaatggcag aagttttaat 2220 tgaaacccct ttggaacccg tcttggaaat ggagcgagtt tacggtaatg gtatagtcgt 2280 ggacgttccc acttcggaca ttactgttga agaaccggac gaattaatat ccccagtaca 2340 agaattctta aatcattatt tcactcctaa cgttaattac actgataaat ccacctttgc 2400 ctttgacttc catcgtggag agtttcaatt tcccgtcgat ggtgtcacat ataacaattc 2460 agtagaacct tttagggagc gaaattttga ttgtcttact ccggtgttgt attcaccgtg 2520 tcctttgaat caggtttcga cacctcggca tgtgcttaac tctatactaa aacgcaacgc 2580 caatgtgcct cgtctgactt cccttgagga tatagcaggt caggccgaaa ttttagtgga 2640 tagattgttt gccatatgtc ctggtgtaga cacgtcctct ttatccgtga cggtagagtc 2700 aattgccgat tggatgaaga ctcaaccgga ttctgttatg ggtcgattaa ccgacggtaa 2760 ccctttgcac tgcaaaccat tagaccgtta ccaattctta ctaaagagtg aaccaaaacc 2820 tgacctgaca gttgaagcgt tgtctaagta ccctatacct caatctatac tttgtcactc 2880 taaggatata aacgctattt tttgtccact aatccgcaca attcgtgata gaattatgga 2940 gaagatggat aaaaaatatc agtttttcac taaagtagat gaggaagggt ttgcagaaaa 3000 gatgaaccgt gtttttcctg ccgactctgc gaagttttat tactcctatg agtttgatat 3060 gtctaagtat gataagtctc aagggcagct ggttctcgac tttgaatgcg cattaatgcg 3120 ccgtctaggt gtcccggaat acattgtcgg atgttggcgt gttgcacaca ctcgtactcg 3180 tgcgagagat cttactaata agatatcttt cgaaactgtg tttcaaagaa aatcgggtga 3240 tgcatccact tactttggta ataccgttat actaatgatt gcattgcttg atgttttacc 3300 ggatgaagat gtagtcttcg gtgcattttc gggtgacgac tctttgattt tttcgactag 3360 accacctgat aaaatcgact ttaagattct atctactcgg tataatttcg aagtgaagtt 3420 gtttgacttc cagtatcact acttctgctc gaaatttgtc cttaatgtga atggtcgttg 3480 ggttgtcaca cccgatccgc tgaagcgtgc ggtcaaactc ggacgtgctg atctaagaaa 3540 ttttgatcat gtggaggaat atagggtgtc attcattgat aatgtgaaga catataataa 3600 ctcagcggtt gttgaaaaat tgtctttggc tgtcatggaa cgttacggtt cctttcataa 3660 tccttcgctt gccatccagt gtatgtatca tttgggaaag aagaaaaact tttcctcttt 3720 gttctatcat gctgcaggtg atatcttgtg ttacgatcca tccagaccta gactggatta 3780 gtctgttgct gattacaccg ggttttcagc tgaatttatc ctatttatgg gtttttcccg 3840 gttttcccaa ataaataaat cttcattatt cggtatgtcg taagtttagt ttagttatat 3900 ccttttgttt ccatctcctt gttttattat aatcg 3935 //