ID JN651148; SV 1; linear; genomic RNA; STD; VRL; 5906 BP. XX AC JN651148; XX DT 19-OCT-2011 (Rel. 110, Created) DT 24-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Blueberry necrotic ring blotch virus segment RNA1, complete sequence. XX KW . XX OS Blueberry necrotic ring blotch virus OC Viruses; Riboviria; Kitaviridae; Blunervirus. XX RN [1] RP 1-5906 RX DOI; 10.1099/vir.0.050393-0. RX PUBMED; 23486668. RA Quito-Avila D.F., Brannen P.M., Cline W.O., Harmon P.F., Martin R.R.; RT "Genetic characterization of Blueberry necrotic ring blotch virus, a novel RT RNA virus with unique genetic features"; RL J. Gen. Virol. 94(Pt 6):1426-1434(2013). XX RN [2] RP 1-5906 RA Martin R.R., Quito-Avila D.F., Cline W.O., Harmon P.F., Brannen P.M.; RT ; RL Submitted (06-SEP-2011) to the INSDC. RL Plant Pathology, USDA-ARS, Horticultural Crops Research Unit, Oregon State RL University, 3420NW Orchard, Corvallis, OR 97330, USA XX DR MD5; f47763328c5c00fbd6eb28c082ac36a4. XX CC GenBank Accession Numbers JN651148-JN651151 represent sequences CC from the 4 segments of Blueberry necrotic ring blotch virus. XX FH Key Location/Qualifiers FH FT source 1..5906 FT /organism="Blueberry necrotic ring blotch virus" FT /segment="RNA1" FT /strain="Georgia" FT /mol_type="genomic RNA" FT /collection_date="2009" FT /db_xref="taxon:1094249" FT CDS 85..5748 FT /codon_start=1 FT /product="methyltransferase helicase" FT /db_xref="GOA:G5DFC6" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR003323" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G5DFC6" FT /protein_id="AEQ55299.1" FT /translation="MTTATIRSRFVEEKSSLQCETDRDGGILQSSNPSYPVCNEVDEHL FT ATLSGVTDDIKEHFLRDALLRNAMVSDHLKSSIQQNLLAQASQRRARTPRYVKYCNEDD FT AKFLQVSFPVYRIERREAADFTPHGYARDSRALDTWYAYDHILKYKPGYTLDSHYDVYC FT KEVGANLAFFASAGEYFSNVHLCMPVLNHKDQFRHVGFRQLANEKAAIAALNPRHNPHI FT HSFNNNGLLTCFKKSEYCTVKAMKVNISHVYDLSVNMIAGIIDSSHAKEVCLTMLFDSR FT MWIENSGLLPRFNMTWEKFKVLGRTRIRFFFLNDTNPAFDHDFDVYTHVLRTRVIRTPE FT GRVFLVNQDRLVNYTVVVQMIQAVGNYIPPETIVQRFPLLSDIGFKVLKTFRYDTLTNE FT TYIHIRTIPNNFYERIYSILSSCKQETFTIQHTNRVIQSLNSSVVTGGLTTAGPNMDPD FT ELLDISTSIYHCLWRRFFEQGKTVSSMSSEEQKLRALNSSSAGVTGFFYYLWKVFWVMH FT KDKLPISEVITPEALDAHLSSSAAINHDSWGVQFLKHIGLKPSRRFNLQVLNLTVIELY FT NYIEEIQLEKDNPLSFSGPIDYNSALLHSASQSPIDGPTLQIVRDMHNETIDFCDNCAA FT ELNPITVPGDGNCFYNAFLKCIGSTASPNTVRQRLMDSRFLPFLCMTKIGDNYVVSAEK FT VTALRDRLRPDNKLGPEKWVNNDVVVLTAYEYEVTICIHKVGSHCRINRKSVIGSKDTE FT LDHIVHLELVDKHYSALLPVEYSPAADQVDLSNYSNESSQMELMSLDGWSMFSIHEAFA FT AIPIFERKYGPTGSSLLTKDYRFESKYVEASILSSSFSNIPNSYRSFYGPMLAQCMDHF FT REKFGSLNSNVYDVHQANGCPTRVLADYYLASGIVRVNFSGSKEMVLDAVTNTAAVART FT LSVPRRNLNPHIKGTIDFLLINPMVFLDALMYVDLQRYHEYLIDCYPLFSSLSVKGNVV FT MCVPKFIELPTLKMMYLLSKFFEEVTVYFPSCVPDHIPYCFWVFQTKLEEKEQKDKLPE FT RITEAIDNSPDECSGAFAYFIDSVVATIGESCDAAVQRIINYASDPTTKCRLDAKTLKA FT CEIFYMTKFVIDDDTPLNSNERAISSVDVEPRIVSGEVRESVIDTISISPLGLNKSVSI FT SFESESSGTSSSDPSSRIWASSKDNIFTRSLSKVQRTTRLTAQVTRNVVGNAKVVRDSF FT FGKFKFCEKWVETHVGEQYQFRRHDMYMHIFSRDVYDQYLKYLKIFDFEQTIQLEYLVS FT RYRTLSIKDNVFEVKYLLVLLRNLYNFLQSTQNVQPYVVFNIPRSQFGQHLCTSFFFKL FT CDLRFFMYDVLPILDSTPVVKNDPQLLAPLVTPIVDTVVKNVRVVIPCVNEEPTALVVE FT SKEVQEHFEDDTDMTGGFLKDAYEDCMKNSYRPVLRDYSTHLSQVVKTTLAKAKDLSTK FT VVNVYNSVHKSEIKNNLMVVWGEDYDSAYINIKGKQDLFGGFAAIGKDNSNRYFVPIYQ FT SAGTYSIGSVRRAPNTSAVDGPYCTFECLSVFTELDIYRNLNTFEFHEVEKQLSTTVFS FT IVQAGPGCGKTYDIVRRLVDAFLSGTVSLMAVLKSRNDYPSVKQKFEKQIKDKKLSFNK FT KKIDEFLTSHVTSIDSILMAKLHTYRHETLLFDEAMISHPGKILYACFLTGCKYAECYG FT DVMQIPFIDRTNSAVPCQYPETAKCFPISRVMDVSFRCPGDIVRFLAPKYKRLYIQLGM FT SIPADETQLFRTHSAVGNSVEVKKISGISDVKFLPSDYIILTFTQVEKTTIAQQKTHAV FT HTIHEYQGLEARNIAIVRLNTLNAYENTFNIYESEHHIVTGISRHTVSLKYLTVIDTDH FT LSKLLKEIEKYTF" XX SQ Sequence 5906 BP; 1623 A; 1146 C; 1266 G; 1871 T; 0 other; cacaaatcac tctgtcaaac tactattgat cttttctaga tcgacaattg ctactgctac 60 tatatcgtag cgcatcacta caaaatgact acagccacta tacggtctag gtttgttgag 120 gagaagagct ctctccaatg cgaaaccgat cgtgatggtg ggatactaca gtcgtcaaac 180 cccagttatc cggtctgtaa cgaggttgac gagcatctag caactctctc tggtgtcaca 240 gatgacatca aggaacactt ccttcgcgac gccctgttga ggaacgcgat ggtttcagac 300 catttgaaga gctcaatcca acaaaatttg cttgcacaag cctcacaacg tcgagcgcgt 360 accccacggt acgtcaaata ttgtaatgaa gatgacgcaa agtttctaca agtatccttc 420 cccgtgtatc gtatagagag gcgagaagcc gccgacttca ctccccacgg ttatgcacga 480 gattcacgag ctttggacac ttggtatgca tacgatcaca ttctgaagta taaacccggc 540 tatactttag attctcatta tgatgtgtat tgcaaagaag ttggagcgaa tctggcattt 600 tttgccagcg ccggagaata tttctcaaac gtccaccttt gtatgcctgt tcttaatcat 660 aaagatcagt ttcgccatgt tggattcaga caactggcca atgaaaaggc tgcaattgct 720 gctttaaacc ctcgtcataa tcctcatatt cactccttta ataacaatgg tttgcttaca 780 tgtttcaaaa aatcggagta ttgtactgtc aaagcaatga aagttaacat ttcccatgtt 840 tatgatctca gcgtcaatat gatagctggt atcattgatt ccagccatgc taaggaggtt 900 tgcttgacaa tgctctttga ttctaggatg tggattgaaa attcagggtt attaccacgt 960 tttaatatga cttgggaaaa atttaaggtg ttaggacgta cgagaatcag attctttttc 1020 ttgaacgaca caaatcctgc ttttgaccat gattttgatg tttatactca tgtgttacgc 1080 actagagtta ttcgcacgcc cgaaggtcgt gtgttcttgg ttaatcagga tagattggtt 1140 aattatacag ttgtcgttca aatgatccaa gctgtgggaa attacatccc accggagacc 1200 atcgttcaga ggtttccgct tttgtcagat attggtttca aagtcttaaa aacatttcgt 1260 tatgacactc tgacaaatga gacatatata catattcgta ctattcctaa taatttctat 1320 gagcgtattt actctatact ttcgagctgt aagcaagaga cattcaccat ccaacacaca 1380 aatagggtaa ttcaatccct taattcttct gttgtgacgg ggggactgac cactgcggga 1440 cctaatatgg atcctgatga gttattggat atatccacat ctatctatca ttgcttgtgg 1500 cgaagatttt ttgaacaggg aaaaaccgtc agttctatga gtagtgagga gcagaagtta 1560 cgtgccttga attcttcgag tgccggtgtt acgggtttct tctactactt gtggaaggtt 1620 ttttgggtta tgcataagga taagctacca atctctgaag ttataactcc agaagcgctt 1680 gacgcacacc tgagttcgag tgccgcgatc aatcatgatt cgtggggagt gcagtttttg 1740 aagcatattg gtctaaaacc ttctcggcgc tttaatcttc aggtattgaa cctcacggta 1800 attgaactct ataattatat tgaggagatt caattagaga aagacaatcc tttgagtttc 1860 tctggaccta ttgattataa ttctgcactt ctccattctg cttcacaaag tcccatagat 1920 ggtcccacct tacaaattgt cagagatatg cacaatgaga cgattgattt ttgtgataat 1980 tgtgcggctg aactcaatcc catcacggtc ccaggcgacg gaaattgttt ttacaacgcc 2040 tttttgaagt gcattggttc cactgcttca ccaaatacgg ttcgccagcg attgatggat 2100 tctcgtttct taccgttttt gtgtatgact aaaatcggtg acaactatgt tgtttcagca 2160 gaaaaggtga ccgctctgag ggacagatta cgaccagata ataagttggg tcccgagaag 2220 tgggtaaaca atgacgttgt tgtgctgact gcgtatgagt acgaagtcac catttgcata 2280 cacaaagttg ggagccattg taggatcaac agaaaatcgg ttatcggaag caaagacact 2340 gagcttgatc acattgttca tctggaacta gtggataagc actattctgc gttgttacct 2400 gtggagtaca gtccggcggc cgatcaagtg gatttatcta attactcaaa tgaaagttca 2460 caaatggaac taatgtctct tgatgggtgg tcaatgttct ctatccatga agccttcgcc 2520 gcaatcccaa tttttgagag aaagtatggt cccacgggtt cttcattgtt gaccaaagat 2580 tataggtttg agtctaaata tgtcgaggcg tccattttgt catcaagctt ctcaaacata 2640 ccaaactcct accgttcctt ctacggtcca atgttagccc agtgcatgga tcactttagg 2700 gaaaaatttg gttcattaaa ttcaaatgtt tatgatgttc atcaggcgaa tggttgtcca 2760 acacgagtgt tagcggacta ttatttggcc tctggaatcg tcagagtgaa tttctctggt 2820 tcgaaggaga tggttctgga cgcagttaca aatactgccg ctgtcgctcg tacacttagt 2880 gttccaagga gaaacctgaa tccacatatc aaggggacaa tcgatttctt gcttataaac 2940 cccatggtct ttcttgatgc tctaatgtac gtcgatcttc agaggtacca cgaatacttg 3000 atcgattgtt atcctctctt cagttctttg agtgtgaagg gtaacgttgt catgtgcgtg 3060 cctaaattta ttgagttacc tacgttgaag atgatgtacc tgttgagcaa atttttcgaa 3120 gaggtcactg tttattttcc atcctgcgtg cctgaccata ttccttattg cttttgggtt 3180 tttcagacga agttggagga gaaagaacaa aaggataagc tcccagagag aatcactgaa 3240 gcgattgata attctccaga tgagtgttcg ggggcatttg catattttat tgattcggtt 3300 gttgccacca taggtgaaag ttgcgatgcg gctgtgcaga ggattattaa ttatgcaagt 3360 gacccgacca ccaaatgtag gttggatgca aaaactttga aagcatgtga gatattttat 3420 atgactaagt tcgttattga cgatgatacg cccttgaact caaatgagcg agcaataagc 3480 tccgttgatg ttgaaccgag gattgtgagt ggtgaagttc gtgagtctgt gattgatact 3540 atatctattt cccctttggg tttgaataag agtgtttcaa tttcgtttga atccgagtca 3600 tctggtacca gttcttcaga tccgtcatcg cgaatttggg catcttctaa agataacatt 3660 tttactagat ctctttcgaa agttcagcgg acaactcgct taactgctca agtcactcgc 3720 aatgttgtgg gaaatgcaaa ggtggttcgt gattccttct ttgggaaatt caaattttgt 3780 gagaagtggg tcgagactca tgttggtgaa cagtatcaat tcaggagaca cgacatgtat 3840 atgcatatat tcagtcgtga tgtttatgat cagtatttga aatatcttaa aatatttgat 3900 ttcgaacaga cgattcagtt ggagtacctg gtttctaggt atcgcacttt atctattaag 3960 gacaacgtgt tcgaagttaa atatctcctg gtattgttac ggaatcttta taacttcctg 4020 caatcgaccc agaacgtcca accttatgtc gtttttaata ttccgaggtc gcaatttggt 4080 caacacttgt gtaccagctt tttcttcaaa ctgtgtgact tacggttctt tatgtatgat 4140 gtgctaccta tacttgactc tacgccggta gttaagaatg accctcaact gctggctcct 4200 ttggtcactc ctatagtaga cactgtcgtg aagaacgtta gggtagttat tccatgcgtt 4260 aatgaagaac ctactgcact cgtggttgag tcgaaagaag tgcaagaaca ctttgaagac 4320 gacacagata tgacgggtgg gtttttgaag gatgcatatg aagattgtat gaaaaactcc 4380 tatagacctg ttttgcgaga ttattctacc catctttctc aagttgtgaa aaccacttta 4440 gcaaaagcaa aggatttgtc caccaaggtt gttaatgttt acaattcggt tcataagtct 4500 gagatcaaga acaacttgat ggtggtttgg ggtgaggatt atgactctgc atacataaat 4560 attaagggta aacaggactt gttcggtgga tttgcagcaa ttggaaagga taattctaat 4620 cgttactttg taccaattta tcagtctgcg ggaacttaca gcattggttc agtccgcaga 4680 gccccgaaca catccgcagt ggatggaccg tattgtacat tcgagtgtct gagtgttttc 4740 acagaacttg atatctacag gaacctcaat acgttcgaat ttcatgaagt tgagaagcaa 4800 ctgtcaacca ctgtgttttc gattgtgcaa gctggtcccg gttgtggaaa aacttatgat 4860 attgttagaa gacttgtgga tgcattcttg tctggtactg tgtctttgat ggctgtgctt 4920 aaaagtcgca atgattaccc gagcgtaaaa cagaagtttg agaaacagat taaagataag 4980 aaactctcat ttaataagaa gaaaatcgat gagtttttaa cttcccacgt tacgtcaatt 5040 gactcaattc tcatggcgaa acttcacact tatagacatg agactttgtt gtttgacgaa 5100 gctatgattt ctcatccggg aaagatactt tatgcctgtt ttctcactgg ttgtaagtat 5160 gccgaatgtt atggtgatgt tatgcaaata ccatttatcg atcgcaccaa ttcggctgtt 5220 ccatgtcagt acccggagac ggccaagtgt tttccaatta gccgggtaat ggacgtttct 5280 ttcagatgtc cgggtgatat agttaggttc ctcgccccaa agtataaaag gttatatata 5340 cagttgggga tgagtattcc tgccgatgag actcagttgt ttaggaccca tagtgcagtt 5400 ggtaactctg ttgaagttaa gaagatatcc gggatttcag atgtcaaatt cttgccctct 5460 gattatataa ttcttacatt tactcaggtt gaaaagacca ccattgctca acaaaagact 5520 catgctgttc atacaataca tgaatatcag ggtttggaag cgcgtaatat tgcaattgtt 5580 cgtctgaaca cccttaatgc gtatgagaat actttcaata tttatgagtc tgaacatcat 5640 attgttacag gaatttcgcg tcatactgtg agtttgaagt acttgacagt catagacacg 5700 gaccatcttt ccaaattgct caaggaaatt gaaaaatata ctttttaaat atcactgatt 5760 acaccgggtt ttcagttatc cctaaaaaag ttgggttttt cccggttttc ccgaccattc 5820 ctatattgtt gttcctcagc actcgatctg ttgtaagttt agtttaattg ttattatttt 5880 ggggttttct tgttatatta ttatcg 5906 //