ID JN648103; SV 1; linear; genomic DNA; STD; VRL; 5413 BP. XX AC JN648103; XX DT 24-NOV-2011 (Rel. 110, Created) DT 23-JUN-2014 (Rel. 121, Last updated, Version 3) XX DE Canine bocavirus 1 isolate Con-161, complete genome. XX KW . XX OS Canine bocavirus 1 OC Viruses; Parvoviridae; Parvovirinae; Bocaparvovirus. XX RN [1] RP 1-5413 RX PUBMED; 22031527. RA Kapoor A., Mehta N., Dubovi E.J., Simmonds P., Govindasamy L., Medina J.L., RA Street C., Shields S., Lipkin W.I.; RT "Characterization of novel canine bocaviruses and their association with RT respiratory disease"; RL J. Gen. Virol. 93(Pt 2):341-346(2012). XX RN [2] RP 1-5413 RA Kapoor A.; RT ; RL Submitted (02-SEP-2011) to the INSDC. RL CII, Columbia University, 722 West 168 Street, New York, NY 10032, USA XX DR MD5; 26bc96c429e39228df309fe61dac64d1. DR EuropePMC; PMC3352345; 22031527. DR EuropePMC; PMC3838256; 24109231. XX FH Key Location/Qualifiers FH FT source 1..5413 FT /organism="Canine bocavirus 1" FT /host="canine" FT /isolate="Con-161" FT /mol_type="genomic DNA" FT /country="USA" FT /isolation_source="nasal swab" FT /collection_date="2010" FT /db_xref="taxon:1511885" FT CDS 306..2252 FT /codon_start=1 FT /product="NS1" FT /note="replication protein; nickase; helicase" FT /db_xref="GOA:G9ID10" FT /db_xref="InterPro:IPR001257" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G9ID10" FT /protein_id="AES86015.1" FT /translation="MALALAGVDDIIHFARPAYTYVLKFPYAEWRRDEARLQSALGYPH FT HDLLKDSTPFLTMPGQDSPAEQASFLESKGPQYGYALLLARTAHAAAYSIFSQKQGKYP FT PAASIYVQCELGLKYLHVHVVMGGDGLNRYNAKATCSNLAYKWLDNIQSQLEINVKTGH FT NTDLDMCNSLIGCVYQAKRECFDMRTEICTILQYKCRNGEMYACRVDPIEFICNYLLCK FT NLKFFTMVDPDRATPFVSHFACSGKTYAATFVNGKWVLPQVRKQWLNYLRDSVCQKADP FT VFSGDMFENLPKVPRATWSVEVSSNKSKITKKETLMIDCIDRCEKNHLLTYEDLVNECS FT DLVIMLGSQPGGTKLIETLLQMVHIKICQKYTALSYVLSRYSAIELLPENKAIQLLIFQ FT GYNPWQVGHWLCCVLHKTAGKQNTVCFFGPASTGKTNFAKAIVNAVKLYGCVNHQNKNF FT VFNDCASKLVNWWEECLMHNDWVEQAKCLLGGTEFRIDRKHKDSQLLPQTPVVISTNHD FT VYTVVGGNTTTMVHAKPLRERIVQFNFMKQLSSTFGEIDPMDVVALLQACSSRFDASLD FT SFYAQWQLQCTPNDFPLASFCDGHSQDFVLHEVGFCDTCGGYAPLETTDRSQPLPARPA FT SSGESLIFACTLP" FT CDS 2454..3041 FT /codon_start=1 FT /product="NP1" FT /db_xref="InterPro:IPR021075" FT /db_xref="UniProtKB/TrEMBL:G9ID11" FT /protein_id="AES86016.1" FT /translation="MKSSSRASSARQTSHHRSRSRSPRDSRLQSGERCSESSASRWRRN FT RSSYTASKTSPLSRKPKTTPMEVFNQHRAKTKTDISMCGFYWHSTRLARSGTDWIFNSG FT KPLFQSKCSNNLVSWDVVREILFEFKKTIDQKYRNMLWHFGRGGYCNKCEYWDNVYLEH FT LANVDSSNDVVMQEISDAEMLEAAMEIDGASE" FT CDS 3025..5163 FT /codon_start=1 FT /product="VP1" FT /note="minor capsid protein" FT /db_xref="GOA:G9ID12" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR013607" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/TrEMBL:G9ID12" FT /protein_id="AES86017.1" FT /translation="MAPANRKPGGWVVPGYRYLGPFNPADNGEPVNSADEAARSHDLAY FT QSYLDAGVNPYFSYNKADSDFIESLAHDSSFGGWLGRSAFGLKKLLAPHLADTKGNPDA FT PSTSRGGSSVSKSERAQKRKLYFARSNKQAKQQKMSAPEAPTEDVAEPGPSGSDPRAGG FT NGGGGGMGGGGGHGVGVSTGGWKAGTVFGNDFVITTNTRQWFAPIFNGHEYKRMAPNEN FT SEPATNRHWVGISTPWGYFNFNEYSSHFSPQDWQRLTNEYKRWRPKAMRVKVYNLQIKQ FT VVTLGSDTLYNNDLTAGVHIFCDGSHQFPYSQHPWDTGTMPELPHRIWRISQYGYFQLQ FT ADLTNGGVSSETPDVGNQEKQLLKSAPLYMLETASHQVLRTGEESSFSFSFDSGWVIND FT KAYAIPQADFNPLIHTRRYFPTRNNNTTSTGGLMFYHRYNPYNKPSNWMPGPSLGYLGA FT TQTSTNPQYARGPVTVVTQPPGTTADSANIDEQSTTHVPSKATMQNSGYDVNPVNCGSS FT RLDAHSLAYDSGPESRGQNIITVRGIDLDMALGLHQMVQDGTETEVGTQTPRTNFTELK FT NVWMYPNQAWDTTPVSRDTPIWVKIPKTDRHTMQDTSDGTLPMAHPPGTIFVRVAKVPI FT PGESDSYLNLYVTGQITCEILWETERFQTKNWRPEIKNDPSVFSDPLLYTFDRQGVYNT FT PETFIEGMPTKRGINRVL" FT CDS 3439..5163 FT /codon_start=1 FT /product="VP2" FT /note="major capsid protein" FT /db_xref="GOA:G9ID13" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/TrEMBL:G9ID13" FT /protein_id="AES86018.1" FT /translation="MSAPEAPTEDVAEPGPSGSDPRAGGNGGGGGMGGGGGHGVGVSTG FT GWKAGTVFGNDFVITTNTRQWFAPIFNGHEYKRMAPNENSEPATNRHWVGISTPWGYFN FT FNEYSSHFSPQDWQRLTNEYKRWRPKAMRVKVYNLQIKQVVTLGSDTLYNNDLTAGVHI FT FCDGSHQFPYSQHPWDTGTMPELPHRIWRISQYGYFQLQADLTNGGVSSETPDVGNQEK FT QLLKSAPLYMLETASHQVLRTGEESSFSFSFDSGWVINDKAYAIPQADFNPLIHTRRYF FT PTRNNNTTSTGGLMFYHRYNPYNKPSNWMPGPSLGYLGATQTSTNPQYARGPVTVVTQP FT PGTTADSANIDEQSTTHVPSKATMQNSGYDVNPVNCGSSRLDAHSLAYDSGPESRGQNI FT ITVRGIDLDMALGLHQMVQDGTETEVGTQTPRTNFTELKNVWMYPNQAWDTTPVSRDTP FT IWVKIPKTDRHTMQDTSDGTLPMAHPPGTIFVRVAKVPIPGESDSYLNLYVTGQITCEI FT LWETERFQTKNWRPEIKNDPSVFSDPLLYTFDRQGVYNTPETFIEGMPTKRGINRVL" XX SQ Sequence 5413 BP; 1335 A; 1340 C; 1401 G; 1337 T; 0 other; tacaccgagc ggcttcgccg ctgcgccctg cgggcgcgct gtatatgttc ctcggcgaac 60 gtgacgtaat gtagtagtgg tgtctataaa gattatatca attgcgctgt cttgtggttg 120 gttaatgagt gactcgctgt gtcagctgtt tgcgattggc tgttgtttta tggccttgtt 180 atgttattgg ttactgattg atgaattttg ggcgggccga gtgactatat atataagtgt 240 gcttcctgct tcgtgtcatt ctgcttccgg ctttcgtcgc gttgagatct ctctgagggt 300 gagtgatggc tcttgctctg gccggggtcg acgatattat tcactttgct cgtcctgcct 360 atacctatgt tctcaagttt ccttacgctg agtggcggcg ggatgaggct cgtcttcaga 420 gcgctctggg gtacccgcat catgatttac tcaaggactc gactccgttc cttactatgc 480 cggggcaaga ttctccggcc gagcaggctt cctttctgga gtctaagggt cctcagtacg 540 gatatgcctt attactggca cgcacggctc acgctgctgc atattctata ttctcgcaga 600 agcagggcaa atatcctcct gctgctagca tatatgttca gtgcgagctt ggccttaagt 660 atcttcacgt acacgtcgtg atgggcggtg acggcttgaa ccggtacaac gccaaggcca 720 cttgctctaa cctggcctat aagtggctgg acaacattca gtctcagctc gagattaacg 780 tcaagaccgg tcacaacacc gaccttgaca tgtgcaattc tctcatcggc tgcgtctacc 840 aggccaagag agagtgcttt gacatgagga ccgagatttg taccatcctg cagtacaagt 900 gccggaacgg cgagatgtac gcctgccggg tcgatcctat agagtttatc tgtaactacc 960 tgttgtgcaa aaacttgaaa ttctttacta tggtcgaccc tgacagagca actccgtttg 1020 tctctcactt tgcctgttct ggtaaaacgt acgcggctac atttgtcaat gggaagtggg 1080 tcttgcctca ggttaggaag cagtggctaa attatcttcg agactctgtc tgtcagaagg 1140 ccgatccagt cttttccggc gacatgtttg aaaacttacc caaggtacct cgcgcgacct 1200 ggtcggtcga agtttcctcc aataaatcta aaatcactaa aaaggaaact ctgatgattg 1260 actgtatcga tcgctgcgaa aagaatcact tgcttaccta tgaagatttg gtcaatgagt 1320 gttctgatct tgtaatcatg ctcggctcac agccgggcgg aactaaattg attgagacct 1380 tgcttcagat ggttcacatt aagatttgtc agaaatatac ggccttgtct tatgtcttgt 1440 cgcggtactc ggcgattgag ctgctgcctg agaacaaggc tatacagctc ttgatctttc 1500 agggatacaa tccctggcag gtcggccact ggctgtgctg cgtgctgcac aagacggccg 1560 gtaaacagaa taccgtgtgc tttttcggtc cggccagcac cggcaagacc aactttgcca 1620 aggctatagt gaatgccgtt aagctgtacg gatgtgtgaa ccatcagaat aagaattttg 1680 tgtttaacga ctgcgcgtcc aagctggtca attggtggga agagtgcctc atgcacaatg 1740 attgggtaga gcaggccaag tgcctgctgg gaggaacgga gtttagaatc gaccgtaagc 1800 ataaagactc tcagctgctg ccgcagactc ctgttgtgat cagtaccaat cacgacgtgt 1860 acaccgtggt cggtggaaac accactacta tggttcacgc taagccgctt cgggaaagga 1920 tcgttcagtt taatttcatg aaacagctgt cttccacctt tggggagatt gatcctatgg 1980 atgtggtggc tctgttgcaa gcctgctctt ctcgattcga tgcgtcgctc gactcgtttt 2040 atgctcagtg gcagcttcag tgcactccta acgattttcc tctcgcttcg ttctgtgacg 2100 ggcattcgca ggactttgtc cttcacgagg tcggcttctg cgacacgtgc ggtggctacg 2160 ctcctctgga gactacggac cgcagtcagc cgctgccggc tcgacctgct tcgtccggtg 2220 agtctttgat ttttgcctgt acgctgcctt gactgtttta ttttctgtat gctatactca 2280 gctttgtgct cttttttcag cgtcgggtgt gaagcgtcgc ctggactttg acccggatcc 2340 tgctccttcc acgtcgacgg ctcctccggc gaagcgccac tccaaggtga ggcgtcccgt 2400 gttccacgac gactggtgta gtcagccggt agatcgccta gaccgcatcc gctatgaaaa 2460 gttcgtcgag agcgtcgtcg gcgcgtcaga cgagtcacca tcggagccgg agtcggagtc 2520 cacgggactc acgccttcag agtggggaga gatgctcgga gtcgtctgca agtcgctgga 2580 ggaggaaccg atcgtcttac actgcttcga agacatcacc tctctctcgg aaaccgaaga 2640 cgactccgat ggaggtcttc aatcaacacc gcgccaagac aaagactgac atttcaatgt 2700 gtggctttta ctggcacagt actcgcctcg cgcggtcggg taccgactgg atctttaaca 2760 gtggaaagcc tctgtttcaa tctaaatgtt ctaataatct tgtatcttgg gatgtggttc 2820 gtgagattct gtttgaattt aaaaaaacta tagatcagaa atatagaaat atgctgtggc 2880 actttggtcg gggtgggtac tgcaataaat gtgaatactg ggataatgtg taccttgaac 2940 acctagctaa tgtagattcc tctaatgatg ttgttatgca ggagataagt gacgctgaga 3000 tgttggaggc tgccatggag attgatggcg ccagcgaata gaaagcccgg tggttgggtc 3060 gtgcctggct atagatattt gggtcccttt aaccctgctg acaacgggga acctgtaaat 3120 tctgctgacg aggccgctcg gtctcatgat ctcgcctatc agtcctatct cgatgctggt 3180 gtaaacccgt actttagcta caataaagct gattctgatt tcattgagtc attggctcac 3240 gactcttcat tcggcggctg gctggggcgc tcggcctttg gcctcaagaa attgcttgcg 3300 ccgcatctcg cggatacaaa gggcaatcct gacgctccgt ccacctcgcg gggaggttcc 3360 tctgtatcca agtcagagag agcacaaaag agaaaactct attttgccag atcaaacaaa 3420 caggccaaac aacaaaagat gtcagctcca gaagctccga ccgaagatgt ggcagaaccg 3480 ggtccatctg gctccgatcc gcgggcggga ggaaatggag gtggtggagg catgggagga 3540 ggtggaggac atggagtggg agtgagcacc ggcggatgga aggccgggac cgtgtttggg 3600 aatgactttg tcatcaccac aaacaccaga cagtggttcg ctcccatctt taacggccac 3660 gagtacaaac gcatggcgcc gaacgagaac agcgaaccgg ccaccaacag acactgggtg 3720 ggaatcagta ctccgtgggg atactttaac tttaacgagt acagttcaca tttctcacca 3780 caagactggc agcgcctcac caacgaatat aaaagatgga gacccaaggc catgagggtc 3840 aaagtataca acctgcaaat aaaacaggtg gtcactctgg ggtcagacac tttatacaac 3900 aatgacctga cggccggcgt tcacatcttt tgtgacggga gccatcagtt tccgtactct 3960 cagcatccgt gggacaccgg gaccatgccc gagctgcctc atcgcatctg gaggatctcg 4020 cagtacgggt actttcagct acaggctgac ctgacgaacg ggggcgtatc atccgagacg 4080 cccgacgtcg ggaaccaaga aaagcagctg ctaaagagtg cgccgctata catgctcgag 4140 acggcgtcgc accaagtgtt gaggacgggg gaggaatcca gcttctcttt ctcgtttgac 4200 agcgggtggg ttatcaacga caaggcatac gccattccac aggcagattt taaccctctg 4260 attcacacca gacgatactt tcctacacga aacaataaca ccacatcaac aggggggctc 4320 atgttttacc atagatataa tccatacaac aaaccgagca actggatgcc ggggccgagc 4380 ttgggctacc tgggggcgac acagacatca accaatccac agtacgcgcg tggtccggtt 4440 actgttgtca cgcagccgcc gggaacgacg gcagatagcg ccaatataga cgagcaatca 4500 accacacacg tcccgtcaaa ggcgaccatg caaaattcag ggtacgacgt gaaccctgtc 4560 aactgcggta gcagcagatt agacgcgcac tcgcttgcat atgattcagg gccagagagt 4620 cgaggacaga acatcattac cgtaaggggg atagacttag acatggcctt gggtctccat 4680 caaatggtgc aggacggaac agaaacagaa gttggtaccc aaactcccag aactaatttt 4740 actgaactca aaaacgtatg gatgtaccca aatcaggcgt gggacaccac tccggtatcc 4800 agggacactc ctatttgggt caagattcca aaaacagaca ggcacaccat gcaagacacc 4860 tcggacggaa cgctgccgat ggcgcatccg ccgggaacca tctttgtcag ggtcgcaaag 4920 gtgcccattc cgggggagtc agactcttac ctaaacctat acgtgacagg acagataacg 4980 tgtgaaatac tctgggaaac agagaggttc cagaccaaaa attggagacc ggaaatcaaa 5040 aacgatccat ccgtattcag cgacccttta ctatacactt tcgacagaca gggggtctac 5100 aatacaccgg aaacattcat agagggcatg cccacaaaac ggggaataaa cagggtcctg 5160 taactttaag aacaaataaa gccataaaac gaaaagtttt gcgcatttgt tatttcttta 5220 aaaggaccat cagtactgta cgtcactata gatcatctga tacggtcagg tattgcttaa 5280 ttatatggcg cagcttagtt atatatcagg tatatgctcg tcacataact aagctaccat 5340 ataattaagc aatacctgac gtatcagatg atctatagtg acgtacagta ctgatggtcc 5400 ttttaaagaa tac 5413 //