ID JN635328; SV 1; linear; genomic RNA; STD; VRL; 3644 BP. XX AC JN635328; XX DT 07-NOV-2011 (Rel. 110, Created) DT 22-NOV-2012 (Rel. 114, Last updated, Version 2) XX DE Beet black scorch virus isolate Xinjiang variant m163, complete genome. XX KW . XX OS Beet black scorch virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Betanecrovirus. XX RN [1] RP 1-3644 RX PUBMED; 22971822. RA Xu J., Wang X., Shi L., Zhou Y., Li D., Han C., Zhang Z., Yu J.; RT "Two distinct sites are essential for virulent infection and support of RT variant satellite RNA replication in spontaneous beet black scorch virus RT variants"; RL J. Gen. Virol. 93(Pt 12):2718-2728(2012). XX RN [2] RP 1-3644 RA Xu J., Wang X., Han C., Li D., Yu J.; RT ; RL Submitted (01-SEP-2011) to the INSDC. RL State Key Lab. for Agrobiotech., China Agricultural University, 2 RL YuanMingyuan Western Road, Beijing 100193, China XX DR MD5; 1afb20f9cd5cae6e3df9a02e457b166d. XX FH Key Location/Qualifiers FH FT source 1..3644 FT /organism="Beet black scorch virus" FT /host="sugar beet" FT /lab_host="Nicotiana benthamiana" FT /isolate="Xinjiang variant m163" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="16-Apr-2009" FT /PCR_primers="fwd_name: bb-421, fwd_seq: FT tgtaatacgactcactatagaagaaacctaaccagtttct, rev_name: bb-412, FT rev_seq: cccgggcacctggaagaccagg" FT /note="variant obtained after passage propagation on N. FT benthamiana in greenhouse" FT /db_xref="taxon:196375" FT CDS 36..2210 FT /codon_start=1 FT /transl_except=(pos:645..647,aa:OTHER) FT /product="82K protein" FT /note="RNA polymerase; ORF2; translational readthrough of FT ORF1" FT /db_xref="GOA:G8HU20" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:G8HU20" FT /protein_id="AER58227.1" FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIINHNTTILWACACAYGFY FT RAFRLIFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCDEMEERRAVLGPSYGKXGGLLCTSGFTTPTWRGNP FT EGLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDGLAPT FT PQPTPGVYAKLSRFHDLVSANLTSTTRLTYEQFLGFYSGRKLERYQQAVESLAIRPIGV FT QDAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDAINRVYGG FT RTVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHKIWLSMYRGA FT DRKTLSKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCASVHNYCSQ FT LGVKRFRLANNGDDCMLVVEAKDEARVRQGLIEYYRELGFTMKVEPTVYELEHLEFCQT FT RPVLVDGAYRMVRNLHQGMSKDLHSLHDLGSRKAAEAWVSAVGSGGRVMNDGVPVLKSF FT FMQFPLSSGPKTKSDMSVALQEDWKYKFNRTGCFKNLTPTPQSRYSFWRAFGVLPDEQI FT ALENGFSRLSFDKLDQDTQEEVSLLQFSGA" FT CDS 36..647 FT /codon_start=1 FT /product="23K protein" FT /note="RNA polymerase; ORF1" FT /db_xref="GOA:Q8B5R9" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q8B5R9" FT /protein_id="AER58228.1" FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIINHNTTILWACACAYGFY FT RAFRLIFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCDEMEERRAVLGPSYGK" FT CDS 2228..2419 FT /codon_start=1 FT /product="7K protein A" FT /note="ORF3" FT /db_xref="InterPro:IPR035284" FT /db_xref="UniProtKB/TrEMBL:Q8B5R7" FT /protein_id="AER58229.1" FT /translation="MEQQRSEQRRERRVRSRSEDRKSMSDVGQSAVNREADVKKDMGPS FT VSMTVVGENVEFTQHFHF" FT CDS 2421..2618 FT /codon_start=1 FT /product="7K protein B" FT /note="ORF4" FT /db_xref="GOA:G8HU17" FT /db_xref="UniProtKB/TrEMBL:G8HU17" FT /protein_id="AER58230.1" FT /translation="MSIIYVVQEKPSGFLVWALVVAIVCIIGLLSYTPPERLNHSYHEN FT NQKTQYITIGGTSTSKVSTN" FT CDS 2434..2577 FT /codon_start=1 FT /product="5'K protein" FT /note="ORF5" FT /db_xref="UniProtKB/TrEMBL:G8HU24" FT /protein_id="AER58231.1" FT /translation="MSYRRSPLGFSCGHWLLQLCALLDSYRTLHLKDLTTLITKTIRRR FT NT" FT CDS 2647..3345 FT /codon_start=1 FT /product="coat protein" FT /note="virus shell; ORF6" FT /db_xref="GOA:G8HU19" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:G8HU19" FT /protein_id="AER58232.1" FT /translation="MAPKRNKGGKKSRMSDETVRAPTAGGVIQRTPGIPPRIRSTTIGT FT RVTNTELLAGVNVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLAIKLIYIPIVPT FT TTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFDGATVQLLGERPTTGAVCI FT DVDVNRFGFTWYRYATLAAITALTANDRNLYIPSVCNVATSGGTAATNVGNLMIKYSIE FT LIEPIPAAIN" XX SQ Sequence 3644 BP; 899 A; 867 C; 943 G; 935 T; 0 other; aagaaaccta accagtttct cgttgatcag cgatcatgga ttcaatcccg tatgtgatcc 60 tgcgcatact cgattttatc ttccactcca tcttctttcc atctttactc tttatcatca 120 accacaacac caccatcctg tgggcatgtg cctgtgccta tgggttctac cgtgcattcc 180 gcctcatctt caagataaag gtggaagtac acccagccac ccgagccgtc ttcaaggata 240 tggtcactcg cttccagcgg gagagtatgt tctcacctga cgacgaagtg ccggagggca 300 tccctatcca cgaggatgtt gaccttgtta gcgaccccac acacaaagat attaagcggg 360 tccgtgctag caggcgagtc tcttatgccg tgagggttgc ccatgtagcc aagtctaagg 420 tgggattgct cgccaatacc aaggcgaatg agctggtgta ctcccgtctt tgccgagacg 480 agatggttac ccacggtgtg cgcccatcgc acattgcaca cgcagtgccg cttgctgtcg 540 cggcctgctt cataccgttg gacagtgatt tccttgcagc ttctattaga aactgcgatg 600 agatggagga gcggagggcc gtactagggc cctcatatgg aaaataggga ggcctactct 660 gcaccagcgg gtttaccacg cctacttggc gtggtaatcc agagggtttg ctggtgaaga 720 gaggaccacc tctggctaaa cctaggaaac tgtaccgttt ttctgggttt gggactcata 780 tacggtacgg agtgcacgat cactcattgg gcaatgttcg gaggggactt gttgagcggc 840 tattcatggt tgaaaccaag gatggcttag ctccaacacc acagcccacc cctggcgtgt 900 acgccaagtt atcccggttc catgaccttg ttagtgccaa cctaacctcg accaccagat 960 taacatacga gcaattcctc ggattttatt ctggtcgcaa attagagagg taccaacagg 1020 ccgtggagtc gttagcaatc cgcccaatag gggtacagga tgcttggctt agcacgtttg 1080 ttaaggctga aaaattaaac atctcagcca aacccgaccc ggcacctagg gttattcagc 1140 ctaggtcgcc gaggtacaat gtggaagttg gacggttcct cagacacgct gaggaacatc 1200 tgttcgacgc catcaaccgt gtgtatggtg ggcgaacggt attcaagggg ttgaatgccg 1260 atcaggctgg catggagatg caagctatgt ggcaagaatt cgacaatcct gtgggtattg 1320 gtatggatgc ctctcgtttc gaccaacacg tctctaagga ggcgttggag tttgaacaca 1380 aaatctggct atccatgtac cgtggggctg acaggaaaac attgtcgaag ctgttgggga 1440 tgcaaatcca caaccgcggt cttgccagat gccctgatgg agaaatcagg tacacggttg 1500 aggggtgtcg tatgtctggg gacatcaaca catcttctgg aaactgctat atcatgtgtg 1560 cttcggtgca caattattgc agccagttgg gtgtcaagag attcaggctt gccaacaatg 1620 gtgatgattg catgcttgtc gtcgaagcca aggatgaagc acgtgtcagg cagggactca 1680 tcgagtatta tagggaattg ggtttcacca tgaaagtgga acctacagtc tatgaactcg 1740 agcacttgga gttttgccag acacgtccag tccttgtcga tggggcatat cgaatggtgc 1800 gcaatcttca ccagggcatg tctaaggatc ttcactcctt gcacgatctt ggtagtagga 1860 aagctgctga agcttgggtt tcagcggttg gtagtggagg ccgtgtgatg aatgatggag 1920 taccagtgct caaatcattc ttcatgcagt ttcctctatc ctctggacct aaaaccaagt 1980 ccgacatgag tgtagcgttg caggaagatt ggaaatacaa attcaatcgg actgggtgtt 2040 tcaagaactt gacacccact ccacaatccc gctactcatt ttggcgtgca tttggagtgc 2100 taccagatga acagattgcc ctggagaatg ggttttctcg tctcagcttt gacaagctgg 2160 accaggatac ccaggaggag gttagcctcc tccagttctc tggggcatga aaacctaacc 2220 acttttcatg gaacaacagc gtagtgaaca acgtcgtgag cgtagagtga gaagtagatc 2280 ggaggacagg aagtctatgt ctgatgtagg gcaatctgct gtcaataggg aagcagatgt 2340 caagaaagat atgggtccat cggtttctat gacggtggtg ggggagaacg tagagtttac 2400 acaacatttc cacttctgaa atgagcatca tttatgtcgt acaggagaag ccctctgggt 2460 ttctcgtgtg ggcattggtt gttgcaattg tgtgcattat tggactctta tcgtacactc 2520 cacctgaaag acttaaccac tcttatcacg aaaacaatca gaagacgcaa tacataacta 2580 ttggaggaac atccactagt aaagtttcca cgaactgaat tttctgcttt ctagtatagt 2640 caataaatgg cacctaagcg caataaagga ggcaagaagt cccgcatgtc cgatgagaca 2700 gtgcgggctc ctactgcagg gggcgttata caacgcacac ctggcattcc tccccgcatt 2760 aggtccacca ctattggtac gcgtgtcact aacactgagt tgctcgccgg agtgaatgtc 2820 gctgcggcgg gagctttctc agttgttggt gctggtcttt tccccagcaa ccttggttgg 2880 ctcaatggga ttgcttccaa ttatagcaaa tttaggtggc ttgctatcaa gctcatctac 2940 atccccattg ttcctaccac gaccgctggg gcaatgacca tggctttatc gtatgatcct 3000 gctgatgcta caccaactag tttccaacag gtacaacaga tgtataatag catcacagca 3060 cctgtctggg ctggatttga tggagctact gttcagctgc taggggagag accaacaact 3120 ggggctgtgt gcattgatgt agatgtgaat cggtttggat tcacatggta tagatatgct 3180 acgcttgctg ccattaccgc actcactgca aatgatagga atctctatat tcctagtgtc 3240 tgcaatgtgg ctacgtctgg tggcactgca gccaccaatg ttggcaatct gatgataaag 3300 tacagcattg agctcatcga gccaatacct gctgccatta attagatccc acatcctggt 3360 gtggctaatc cagtgaaaaa tattaggaaa tccttgggat tcacacccca gggaggattg 3420 cttgcatagt gcaggtatgt cgagtcacac tatgaggtat tggtgctgaa tcctgggaaa 3480 caggcttgac aggtttgggt ggttccagac cgatgtatta cccaagatac tcatggtact 3540 ctactagaaa acactatgcg tgcgcacacg gctggctatg tcctatcata gctgggggcc 3600 ccggagtgcg aaaccctctt atatacctgg tcttccaggt gccc 3644 //