Dbfetch
ID JN634761; SV 1; linear; genomic RNA; STD; VRL; 7552 BP. XX AC JN634761; XX DT 30-JAN-2012 (Rel. 111, Created) DT 05-APR-2012 (Rel. 112, Last updated, Version 3) XX DE Apple chlorotic leaf spot virus isolate Z3, complete genome. XX KW . XX OS Apple chlorotic leaf spot virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Trichovirus. XX RN [1] RP 1-7552 RX DOI; 10.1007/s00705-011-1195-5. RX PUBMED; 22278708. RA Niu F., Pan S., Wu Z., Jiang D., Li S.; RT "Complete nucleotide sequences of the genomes of two isolates of apple RT chlorotic leaf spot virus from peach (Prunus persica) in China"; RL Arch. Virol. 157(4):783-786(2012). XX RN [2] RP 1-7552 RA Niu F.Q., Pan S., Li S.F.; RT ; RL Submitted (30-AUG-2011) to the INSDC. RL State Key Laboratory of Biology of Plant Diseases and Insect Pests, RL Institute of Plant Protection, Chinese Academy of Agricultural Sciences, RL Yuanmingyuan Road West 2, Haidian, Beijing 100193, China XX DR MD5; a4f25fad1b690d3474a26df949e0c5aa. DR EuropePMC; PMC3751145; 23938201. DR EuropePMC; PMC4982687; 27519059. XX FH Key Location/Qualifiers FH FT source 1..7552 FT /organism="Apple chlorotic leaf spot virus" FT /host="Prunus persica" FT /isolate="Z3" FT /mol_type="genomic RNA" FT /country="China" FT /collected_by="Shifang Li" FT /collection_date="10-Jun-2011" FT /db_xref="taxon:12175" FT 5'UTR 1..151 FT CDS 152..5803 FT /codon_start=1 FT /product="polymerase" FT /note="ORF1" FT /db_xref="GOA:H2DQ62" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008744" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:H2DQ62" FT /protein_id="AEY80040.1" FT /translation="MAFSYRTPQEELLSRLPQSQQEVISGFQYERIQKEEEKKVENFSF FT YLPEKTREWFTKSGVYLSPFAYVNHSHPGCKTLENHLLFNVVASYISKYPYVACLSIKS FT NKMSKMERLGSNSVKTYDILNRLVTAKDKARYGPLAKPERSPCPKKTNVFIHDEIHYWS FT RDQLETFLQIYKPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHGKDLVYMPDGVRSES FT YTQPLENGYLLSSSSILIKDRTTGVEVRYQVSLTYSLGSHHLFHIYPTENLMKEEVRRF FT GPYDLFDVGSLFVKPVRVPIQDFPLSVFKKIFIYMSSLKKPDVQSAVAKLRQLSDADIS FT IESVFMVQEFASRIEKDGIERWSCSFWGCMKDWFFDKLPYREVLEKIGLADDFTRRLMK FT IKPLAFDIYTTDRPLTVRMVIDQIWGERQSSHDDMPNIVFYGRREWIEHGVVPKVKKGL FT AKLIPGREFDTNDYPREIYSDLLSSTSLWRSYDDNLKHRNASPLIVLKSSKAYSEAAEF FT NSHCLSLCATPCGEKVAKTPFELEHEKRKKELSTECLNFHIKKMKVKNLLELEEKLGEH FT KKKIPRRGKKIKEQRRSRMIPVHLLTPIDDVEVKELKVKEKERTKPHIDKGADEAKRNA FT EPSDVGPKVENVMPDAQCVLKSPVGLKLSNLVGKTQLCSAGLIKTVGNDYLALAEQVES FT MPLVQLKGKKAAYFCLDFPMVYFHDKVSYPTFEATGEIKQVMIKAKEKWGINFNSALVQ FT VYNDGCRLPLHSDNEECYDDDGILTINIRGDAKFHTTCHDEITDLKQGNEILMPAGYQK FT KNRHAVEVNSEGRTSVTLRVHKRDFSFESKLRFIKGKFDCLFVSIAEIIHKKPEEVMMF FT IPHIMDRCISNRGCSLDDAKAICEKYEIKIECEGDCGLVECGTSGLSIGRMLLRGNHFS FT VASVRRSSMDSLANSSKEIKSSGVLDHVTFNFHKRLKLVEPDLTMVDVKVDSPRAGKLL FT KSLMDGMTGIVSHNSTHEGWRMIKGINSTSEMRSFMSMARGQGEETKGDLFDKVQELNF FT MKVKIYGIFGFAGSGKSHAIQNLIQSEFKGSQGVMVICPRRFLAKDWNEKGVDEKDIKT FT FESALKSDVKGKRLFILDEVSLLPKGFTDLLMLKMHMEGILKKSTIVCIGDPLQAGYFC FT PKDDNYLSREGEIKRLFKEGVNYKWYSYRINKFVAKKLAIETMNDFIGIDEQSSIYKDM FT PSAHHFMEKKGNHIEVILVASMVEKELYSNYGNVMTFGESQGLTFNCGVIVLSEEAKLC FT SDAHIMVAITRFRRGFCFALGSKGSKEDYMRSMKSGLLQRMCFGVGASKEFILGSSSVN FT LILSEKDITKGAGVDEMDREARLEGDVWLKSMIYLGKRYHIIEPLGQVIKLTDGAIKCH FT IPVCSSQTLGPELDHIQAREFREFKGKNGWSNQFREEAGPNWKFPYRVNQAMSHEAVYP FT RHKMDDDLTFLAAIRKRLRFDNVANNYAKFKAAESRGKYLAKVFLKHVPIKCGRDQRLL FT DQCRQEFEETKLSKSAATIGAHSQRSDSDWPLDKIFLFMKSQLCTKFEKRFTEAKAGQT FT LACFPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFCELEDFAKRFSNGSTCVESD FT YTAFDVSQDHTILAFEVELLKHFGWDDRILQSYIKMKCTLGCRLGGFAIMRFTGEFSTF FT LFNTLANMVFTFCRYEVPDGTPICFAGDDTCALRNLREIDTHEFILSKLSLKAKVNRTK FT VPMFCGWRLCCDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAYKLGERLYSHL FT EIEQLNYHQVLTRFFIRNKHLLRGDSRHSISELEWLSDEDGDDGKGSQVEDRRRGYSNC FT WGEKLQNLF" FT CDS 5715..7097 FT /codon_start=1 FT /product="movement protein" FT /note="ORF2" FT /db_xref="GOA:H2DQ63" FT /db_xref="InterPro:IPR001815" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:H2DQ63" FT /protein_id="AEY80041.1" FT /translation="MAMMVRGHKLKIAEGDIPIAGVKSSRIYSDISPFKRASDLMIHWN FT EFVFKVMPEDIAGDGFRLASIPVIPSSEVQAVLKERESTNYVHWGALSISIDALFRKNA FT GVSGWCYVYDNRWETFEQAILQKFRFNLDSGSATLVTSPNFPVSLDDPGLSNSISVAVM FT FENLNFKLESYPISVRVGNMCRFFDSFLSSVKNKVDSNFLLEAANADPLGAGAFGFEQD FT DQVSELFNYIQTVPTQAIRSREHEIPKGLFGMMGKKKVKSFEFASGSREFGKRKPQRGR FT AIERSLSQRVVPGFRSQGEESEYQGLSTDSDSGNFITRSGKSKAGAKSVASEGSSTDNI FT SAREFQFARQNKKKEDGSSFESAAKGGRRPESVPGRRRQTPSWKDRGNPGTDVGVHLRE FT HSNPRDVRADRVPGPDGGGEINGGPEGDRVIQSEGDRQYDQSLQDYLFGSEHQQHDLPA FT SM" FT CDS 6781..7362 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:D3XFI9" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:D3XFI9" FT /protein_id="AEY80042.1" FT /translation="MAAVLNLQLKVDADLKAFLVAEGRPLHGKTGVILEQMLESIFANI FT AIQGTSEQTEFLDLMVEVKSMEDQKVIGSYNLKEIVNMIKAFRTTSSDPNINNMTFRQV FT CEAFAPEARNGLVKLKYKGVFTNLFTTMPEVGSKYPELMFDFNKGLNMFIMNKAQQKVI FT TNMNRRLLQTEFAKSENEAKLSSVSTDLCI" XX SQ Sequence 7552 BP; 2338 A; 1340 C; 1858 G; 2016 T; 0 other; tgatactgat acagtgtaca ctcacgtcgt gagtaaacag attgacgtaa cgccacaatc 60 gtggtcaagg accagcatta taatgctatc acattaaata caatcacatt gcattttaga 120 actttccgtt taatcacgtg aaaggttaca gatggctttc tcctacagaa cgccacagga 180 agaactccta agtagactac ctcagtctca gcaggaggtg ataagtgggt ttcaatatga 240 acgcattcaa aaggaggagg agaagaaggt ggaaaacttc tctttttacc taccagagaa 300 aaccagggag tggttcacta agtcgggtgt ttatttatca cccttcgctt acgttaatca 360 ttctcatcct ggctgtaaaa ctctggagaa ccacctttta tttaatgttg tagctagtta 420 tattagtaag tacccttatg tagcatgcct cagtatcaaa tccaacaaga tgagcaaaat 480 ggaacgattg ggttccaatt ctgttaaaac ttatgatatc ttaaataggt tagtcacggc 540 taaagataag gctcgttatg ggcctttggc caaacctgag agatccccgt gtccgaagaa 600 gaccaatgta ttcattcatg atgagattca ttattggtca agggatcagc tagagacttt 660 tctccaaatt tataagccaa aaaatttatg ggcgacccta gtgtttcccc ctgaaatatt 720 agctggctac aagtcatccg ttcttccatt cctctatcaa tttgaaattc atgggaagga 780 tctggtttat atgcctgatg gagtgaggtc tgaaagttac acccaacctc ttgaaaatgg 840 ctacctgctt agttcgagta gcatactcat taaagacaga accactgggg ttgaggttag 900 gtatcaggtg agtctcacgt actcattagg ttctcatcat ttatttcaca tctatccaac 960 tgagaatctg atgaaagagg aagtgagaag attcgggcct tatgacctct ttgatgttgg 1020 ctctttgttt gttaaacctg tgcgtgttcc aattcaagat ttccctctca gtgtgttcaa 1080 gaaaatcttt atctacatga gttcactgaa gaaacctgat gtgcagtcag cagtggccaa 1140 attaagacag ctgtctgatg ctgacatctc aatcgaaagt gtcttcatgg tccaagagtt 1200 tgccagtcgg atagaaaaag atggtataga aagatggtct tgctcatttt ggggttgcat 1260 gaaggactgg tttttcgaca aattgccata tagggaggtt ctggagaaga ttggcctggc 1320 tgacgatttc acgagaaggt tgatgaaaat caaaccttta gccttcgaca tttataccac 1380 agacaggccg ttgaccgtca ggatggtaat agatcaaatc tggggggaaa gacaaagttc 1440 ccatgatgac atgcccaata tagtcttcta cggaaggaga gaatggattg aacatggggt 1500 ggttcctaag gttaagaagg ggttggctaa attgattccg ggtagggagt ttgacacaaa 1560 tgattaccca agagagatct actctgattt gttgtcgtca acatcccttt ggagatcata 1620 tgatgataat ctgaagcaca gaaacgccag tcccctcatc gtgcttaaat ccagcaaagc 1680 ctactcagaa gcagcagaat tcaattcaca ctgtcttagt ctatgtgcaa caccttgtgg 1740 ggaaaaagtt gcaaagactc cttttgagct ggagcatgaa aagaggaaaa aggagttatc 1800 aacagagtgt ctgaattttc acataaagaa aatgaaagtg aagaacttgc ttgagctgga 1860 ggaaaaactt ggtgagcaca aaaaaaaaat tccaaggaga ggcaaaaaga tcaaggaaca 1920 aagaaggtca aggatgattc cggtgcatct actcacacca attgatgatg tggaggttaa 1980 ggaacttaaa gtgaaggaga aagagaggac aaaacctcac attgacaagg gggctgatga 2040 agctaaaagg aatgctgaac cttctgacgt agggcccaag gtggaaaatg tgatgccgga 2100 tgctcaatgt gttttgaagt ctccagtggg tttaaagttg agtaatctgg ttggcaagac 2160 acaactctgc tcagctggtt tgattaaaac ggttgggaat gattaccttg cgttggctga 2220 gcaggtggag agcatgcctc ttgttcaact caaagggaag aaagcagcat atttttgcct 2280 tgactttcca atggtgtatt tccatgacaa agtctcctat ccaacatttg aggcgactgg 2340 ggaaattaag caagttatga taaaggcaaa agaaaaatgg ggaattaact ttaacagtgc 2400 actggttcaa gtttacaatg atgggtgccg gttacctttg catagtgaca atgaggaatg 2460 ctatgatgat gatggaatac tcacaatcaa catcagagga gatgcaaagt ttcacacaac 2520 ctgtcatgat gagattacag atttgaagca agggaatgag atattaatgc cagcaggtta 2580 ccagaagaag aacaggcatg cagtagaagt caactctgaa ggaaggacaa gtgtcactct 2640 aagagttcac aaaagggact tcagttttga gtccaaactc agatttatca aaggtaagtt 2700 cgactgcttg tttgttagca ttgctgagat aatacacaaa aaacctgagg aggtcatgat 2760 gttcatccca cacatcatgg acagatgcat aagtaacaga ggctgttcac ttgatgacgc 2820 gaaagcgatc tgtgagaagt acgaaattaa aatagaatgt gaaggcgatt gtggactagt 2880 agagtgtggc acatcggggc tttcaattgg gaggatgctt ctcaggggaa atcatttttc 2940 tgtggcttct gtcaggaggt catcaatgga ttcactagcc aactcatcca aagagatcaa 3000 gtcaagtggt gttctggacc atgtgacatt caattttcac aagaggctta agttggttga 3060 acctgatttg acaatggtgg atgtcaaggt ggattctcct agagcaggga aattgctcaa 3120 gagccttatg gatggcatga ctgggattgt ttctcacaac tcgacccacg agggatggag 3180 aatgatcaag ggaataaaca gcacctctga gatgaggtca ttcatgagca tggcgagagg 3240 ccaaggtgaa gagaccaaag gtgatctatt tgacaaggtt caggaattga atttcatgaa 3300 ggtcaaaatt tatggaatct ttgggtttgc cggatctggg aagagccatg caatacagaa 3360 tttgattcaa tctgaattca aaggctccca gggagtgatg gttatctgtc ccaggagatt 3420 tctggcgaag gattggaatg aaaaaggggt ggatgaaaag gacattaaaa cttttgaaag 3480 cgcattgaag tcagatgtta aagggaagag gttattcata ctcgatgaag tcagtttatt 3540 acccaagggc ttcacagacc tgcttatgct caagatgcac atggaaggaa ttctgaagaa 3600 gtcgactatt gtgtgcattg gtgatccact tcaggctggg tacttctgtc ctaaggatga 3660 caactatctg tctagggaag gagaaatcaa gcggcttttc aaagagggtg tgaattacaa 3720 gtggtacagc tacaggatca acaagtttgt agcgaaaaaa ctggccattg agacaatgaa 3780 tgactttatc ggcatagatg aacaaagttc aatttacaaa gacatgcctt ctgctcatca 3840 tttcatggag aaaaaaggga atcacataga agtgattctt gttgccagca tggttgaaaa 3900 agagctttac tcaaactatg gtaacgtgat gacttttggt gagtcacagg gtctgacttt 3960 caactgtggg gtgatcgttc tctctgagga agccaagctg tgctctgatg cacacataat 4020 ggtggcaata acaagattta gaagaggttt ttgctttgca ttgggaagca aaggttcaaa 4080 ggaggattac atgaggtcaa tgaaaagcgg gctgcttcag agaatgtgct ttggtgttgg 4140 ggcttcaaaa gaatttatcc tgggatcctc ctctgttaat ctcattctaa gtgaaaagga 4200 catcaccaaa ggagcaggtg ttgatgagat ggacagagaa gcaaggttag agggtgatgt 4260 ttggcttaaa agcatgatat accttggaaa gagataccac attatagagc cacttggtca 4320 ggtgatcaag ttaaccgatg gtgcaattaa atgtcacatt ccggtctgtt caagtcaaac 4380 cctgggccct gagttggacc acatccaggc gagagaattc agggaattca aaggaaagaa 4440 tggatggtca aatcaattca gagaagaggc cgggccaaat tggaagtttc cttatcgagt 4500 caatcaggca atgagtcacg aggctgtgta ccccaggcac aagatggatg atgatctcac 4560 ctttctggct gccataagaa agaggcttcg ttttgataat gtcgcaaaca attacgcaaa 4620 gttcaaggca gctgaaagca gggggaagta tcttgcaaag gtctttctca agcatgtccc 4680 aatcaaatgt ggaagggatc agagacttct ggatcaatgc agacaagaat ttgaagaaac 4740 aaaactttcg aaaagcgctg ccaccattgg cgcacactct caaaggtctg attcagattg 4800 gccattggac aaaatttttt tgttcatgaa atcgcagttg tgcacgaaat ttgaaaaaag 4860 attcaccgaa gccaaagctg gtcagactct ggcttgcttt ccgcacaaga ttcttgtgga 4920 attcagccca tggtgtaggt acacagagaa ggttctcact gcgaatctac cggacaatta 4980 ctacattcat caaaggaaaa atttttgtga attggaagat ttcgcaaaga gattctcaaa 5040 tggatcgaca tgtgtagaat cagactacac agcgtttgat gtttcacaag accacaccat 5100 cctggctttt gaagtggagt tactcaagca ttttggttgg gatgatagaa ttctccagag 5160 ttacatcaaa atgaagtgca cgttgggttg caggttgggg ggtttcgcaa ttatgagatt 5220 cacgggagag ttttcaactt tcctgttcaa tacccttgcc aacatggtgt ttacattctg 5280 cagatatgag gtgccggatg gaactccaat ttgttttgca ggggatgaca cgtgcgcttt 5340 gagaaacttg agagagattg acactcatga gtttatcctg agtaagttga gtttaaaagc 5400 gaaagttaac agaacaaaag taccaatgtt ttgcggatgg cgattgtgtt gtgatggtct 5460 aatcaaggaa ccttgcctga tttatgaaag gttgcaagtt gcaattgaaa acgggaggtt 5520 aatggatgtg atagattcat atttcttgga gttttcattc gcctacaaat taggtgagag 5580 gctctattca catcttgaaa ttgaacaact gaattatcat caggttttga caaggttctt 5640 cataagaaat aagcatctat tgagagggga ttcaagacac agcatttctg aactcgagtg 5700 gttatccgac gaagatggcg atgatggtaa ggggtcacaa gttgaagatc gcagaagggg 5760 atattccaat tgctggggtg aaaagctcca gaatttattc tgacatcagc ccgttcaaga 5820 gggcatctga tctaatgatt cactggaatg aatttgtctt caaggtcatg cccgaagata 5880 ttgcaggaga cggcttcaga ttagcttcaa tacctgtcat accttcttcc gaagtgcaag 5940 ctgtcctaaa ggaaagagaa agtacgaatt atgtgcattg gggggcactg tccatatcaa 6000 tcgatgcact gttcagaaag aacgcagggg tgtctggttg gtgttatgtg tacgataaca 6060 gatgggaaac atttgagcag gccatcttac agaaattccg tttcaatctg gatagtgggt 6120 ccgccacctt ggtgacttca cccaatttcc cagtctcatt ggatgatcca ggtttgtcca 6180 actcgatcag tgtggccgtg atgtttgaga atcttaactt taaacttgag agctacccaa 6240 ttagtgtgag ggtaggtaac atgtgcaggt tcttcgacag cttcttgagc agtgtcaaga 6300 acaaagttga ttcaaacttt ttacttgagg ctgcaaatgc agatccatta ggagcagggg 6360 cttttggctt tgagcaggat gatcaagtga gcgagctgtt caattacatt caaacagttc 6420 caactcaggc catcaggtca agggagcacg aaatcccaaa gggattattc gggatgatgg 6480 gaaagaagaa ggttaagtct tttgaatttg cttcaggttc gcgggagttt ggaaaaagaa 6540 aaccacaaag aggaagggca attgaaagat ccttgagtca aagagtggtt cctggattta 6600 ggtcccaggg tgaggaaagt gaatatcaag gtttgtcaac tgacagtgat tctggaaatt 6660 tcatcacaag aagtggaaaa agcaaagctg gggctaaatc cgttgcttca gaagggtcat 6720 ccactgataa catctctgca agagaatttc agtttgctag acaaaataag aagaaggagg 6780 atggcagcag ttttgaatct gcagctaaag gtggacgccg acctgaaagc gttcctggtc 6840 gcagaaggca gaccccttca tggaaagaca ggggtaatcc tggaacagat gttggagtcc 6900 atcttcgcga acatagcaat ccaagggacg tcagagcaga cagagttcct ggacctgatg 6960 gtggaggtga aatcaatgga ggaccagaag gtgatagggt catacaatct gaaggagatc 7020 gtcaatatga tcaaagcctt caggactacc tcttcggatc cgaacatcaa caacatgacc 7080 ttccggcaag tatgtgaggc gtttgcacct gaggcaagaa atgggttggt caaacttaag 7140 tataaagggg ttttcacgaa cctttttact acaatgccag aagttgggag caaatacccg 7200 gagctgatgt ttgattttaa taagggcctc aacatgttta tcatgaacaa ggctcagcag 7260 aaagtaatta ctaatatgaa ccgtcgcctt ttacagactg aatttgcaaa aagtgaaaat 7320 gaggcgaaac tctcgtctgt ctcaactgat ctttgcattt agtctattta ggaggttcgg 7380 tttgataaat aaaataaata aacagcgtgt ttgaattaaa tgcatatgtt aaatatgttt 7440 gatgaatgaa caaactcttg aacccatgaa agagtataaa gagtcatggt atttaaattg 7500 gagtgtttag acttataata aatagcctgt agacttttaa atattttact ac 7552 //